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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027447 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072118 | Ga0207622 |
| Sample Name | Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K4-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7163836 |
| Sequencing Scaffolds | 12 |
| Novel Protein Genes | 12 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 4 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 42.4 | Long. (o) | -85.37 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012929 | Metagenome / Metatranscriptome | 276 | Y |
| F017538 | Metagenome / Metatranscriptome | 240 | Y |
| F020731 | Metagenome / Metatranscriptome | 222 | Y |
| F022740 | Metagenome / Metatranscriptome | 213 | Y |
| F030160 | Metagenome / Metatranscriptome | 186 | Y |
| F037759 | Metagenome / Metatranscriptome | 167 | N |
| F044475 | Metagenome / Metatranscriptome | 154 | Y |
| F051439 | Metagenome / Metatranscriptome | 144 | N |
| F063749 | Metagenome / Metatranscriptome | 129 | Y |
| F083399 | Metagenome | 113 | N |
| F097285 | Metagenome / Metatranscriptome | 104 | Y |
| F099400 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207622_100144 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1297 | Open in IMG/M |
| Ga0207622_100145 | All Organisms → cellular organisms → Bacteria | 1297 | Open in IMG/M |
| Ga0207622_100160 | Not Available | 1264 | Open in IMG/M |
| Ga0207622_100431 | Not Available | 978 | Open in IMG/M |
| Ga0207622_100459 | All Organisms → cellular organisms → Bacteria | 954 | Open in IMG/M |
| Ga0207622_100612 | Not Available | 882 | Open in IMG/M |
| Ga0207622_101047 | Not Available | 734 | Open in IMG/M |
| Ga0207622_101449 | Not Available | 642 | Open in IMG/M |
| Ga0207622_101718 | Not Available | 599 | Open in IMG/M |
| Ga0207622_101997 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium | 565 | Open in IMG/M |
| Ga0207622_102090 | All Organisms → cellular organisms → Bacteria | 554 | Open in IMG/M |
| Ga0207622_102537 | All Organisms → cellular organisms → Bacteria | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207622_100144 | Ga0207622_1001443 | F083399 | MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYGFDLRNVPVLSQHGGAIIVFIFVSAPVQVAVLALAAAYKGNIADYLGYRLPRRGEVVLCLAILAAMIA |
| Ga0207622_100145 | Ga0207622_1001451 | F099400 | PMRILIWIVGLLALGTSLVSSLRGGAYTRAFVTMIQDMHRAFGLHLFG |
| Ga0207622_100160 | Ga0207622_1001601 | F022740 | AGAGSRNVAFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIKKLGWKIVQLKPER |
| Ga0207622_100431 | Ga0207622_1004311 | F017538 | MARTPMPASLTLVRASRNRDGEWSSDDYDVFEGKQLVGRITLTPQAPEGRPWFWTITARPESSQNQGYAVSREQAMLEFNARWLNPARL |
| Ga0207622_100459 | Ga0207622_1004591 | F097285 | AETEKEAANEEAQGPVSHSKEWLKSEEGQASLRQSARR |
| Ga0207622_100612 | Ga0207622_1006122 | F030160 | MAGTMSEKVEQRLPVSVDALRVESYSATDDSIVILLRPKYSTAERAYSIPVECLQDLIIDLRRLSFSAPTAPYEKADSQTEPLLPLELP |
| Ga0207622_101047 | Ga0207622_1010471 | F012929 | MIRFAAVLVGAAVLFGLEQQFGVQLYLAIPAAIAVYFATLIVLTLAFG |
| Ga0207622_101449 | Ga0207622_1014491 | F044475 | MRMPLLAYFLVMGILLFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE |
| Ga0207622_101718 | Ga0207622_1017181 | F037759 | MKGTGLLHPGKLAAVIVAGGLLSGAARAQSPELGAPSIGILPPSDILASVSYLGLDPSGEPVRRGAYYMLHAFDRAGIELLVVVDAQFGDVLFMAPALNTSLTPPYTRAARIIQ |
| Ga0207622_101997 | Ga0207622_1019972 | F020731 | IALLFVADAALEKDGSPVIVTSQRSGLPESSHRPDKIPVLTMAPAPDPDMTSKIVRDAQPKPVAQDPMKIHPAARAARAEAMPQTPSVTQPMNDRPPMNYHYRRSEEFDRFSIKGL |
| Ga0207622_102090 | Ga0207622_1020902 | F051439 | DGLINDAKPYPTLAAAMQVAGLSLKTGSATTAWIEDDHGNVCANTDDVKKHCGLT |
| Ga0207622_102537 | Ga0207622_1025371 | F063749 | VLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |