Metagenome / Metatranscriptome Family F098660

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098660
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	50 residues
Representative Sequence	MDLTMAEKRDLIERITELVKNDILNKEDRDDIYRVCMVACDRELAKLKEE
Number of Associated Samples	54
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.87 %
% of genes near scaffold ends (potentially truncated)	33.98 %
% of genes from short scaffolds (< 2000 bps)	84.47 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.874 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (33.981 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut (32.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.28% β-sheet: 0.00% Coil/Unstructured: 48.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF03354	TerL_ATPase	33.98
PF04860	Phage_portal	33.98
PF00574	CLP_protease	5.83
PF02604	PhdYeFM_antitox	2.91
PF15919	HicB_lk_antitox	1.94
PF00436	SSB	0.97
PF00497	SBP_bac_3	0.97
PF05119	Terminase_4	0.97
PF00847	AP2	0.97
PF13635	DUF4143	0.97
PF13392	HNH_3	0.97
PF00990	GGDEF	0.97
PF00476	DNA_pol_A	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	33.98
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	11.65
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	11.65
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	5.83
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	2.91
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	2.91
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.97
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.97
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.97
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.87 %
Unclassified	root	N/A	23.30 %
Viruses	superkingdom	All Organisms → Viruses	5.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.87 %
Unclassified	root	N/A	23.30 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	4.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	67.96 %
Unclassified	root	N/A	23.30 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	4.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	67.96 %
Unclassified	root	N/A	23.30 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	4.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	66.99 %
Unclassified	root	N/A	23.30 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	52.43 %
Unclassified	root	N/A	23.30 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	3.88 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.97 %
Desulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	24.27 %
Unclassified	root	N/A	23.30 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	5.83 %
Myoviridae sp. ct7Q419	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	3.88 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.97 %
Desulfovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae	0.97 %
Eubacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae	0.97 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	24.27 %
Unclassified	root	N/A	23.30 %
Myoviridae sp. ct7Q419	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	3.88 %
Desulfovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	0.97 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.97 %
Eubacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium	0.97 %
Enterocloster	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Enterocloster	0.97 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.30 %
Ruminococcus flavefaciens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	16.50 %
unclassified Ruminococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus	7.77 %
Myoviridae sp. ct7Q419	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	3.88 %
unclassified Clostridium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium	0.97 %
Enterocloster clostridioformis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Enterocloster → Enterocloster clostridioformis	0.97 %
unclassified Desulfovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio	0.97 %
Eubacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium	0.97 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.30 %
Ruminococcus flavefaciens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	16.50 %
Ruminococcus sp. 1001175B_160314_E1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	7.77 %
Myoviridae sp. ct7Q419	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	3.88 %
Desulfovibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp.	0.97 %
Clostridium sp. C105KSO14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO14	0.97 %
Enterocloster clostridioformis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Enterocloster → Enterocloster clostridioformis	0.97 %
Eubacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium	0.97 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2075704000\|RmDRAFT_ConsensusfromContig1116670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	3814	Open in IMG/M
2075704000\|RmDRAFT_ConsensusfromContig232092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	967	Open in IMG/M
2075704000\|RmDRAFT_ConsensusfromContig236396_1967628	Not Available	648	Open in IMG/M
3300007961\|Ga0079305_1035929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1326	Open in IMG/M
3300009666\|Ga0116182_1000051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	118593	Open in IMG/M
3300009670\|Ga0116183_1281332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	731	Open in IMG/M
3300009682\|Ga0116172_10294911	Not Available	794	Open in IMG/M
3300009693\|Ga0116141_10491638	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300009713\|Ga0116163_1103138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1090	Open in IMG/M
3300009720\|Ga0116159_1399256	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	513	Open in IMG/M
3300009772\|Ga0116162_10238162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	767	Open in IMG/M
3300009772\|Ga0116162_10271902	Not Available	706	Open in IMG/M
3300009772\|Ga0116162_10296492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	668	Open in IMG/M
3300009775\|Ga0116164_10136380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1138	Open in IMG/M
3300009775\|Ga0116164_10255667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	757	Open in IMG/M
3300009778\|Ga0116151_10044617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	2933	Open in IMG/M
3300009778\|Ga0116151_10322035	Not Available	723	Open in IMG/M
3300010270\|Ga0129306_1021867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1804	Open in IMG/M
3300010282\|Ga0129307_1030167	Not Available	1358	Open in IMG/M
3300010282\|Ga0129307_1050991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	885	Open in IMG/M
3300010282\|Ga0129307_1056764	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	812	Open in IMG/M
3300010282\|Ga0129307_1064557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	736	Open in IMG/M
3300010344\|Ga0116243_10201385	Not Available	1332	Open in IMG/M
3300010344\|Ga0116243_10877454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	519	Open in IMG/M
3300010346\|Ga0116239_10841736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	573	Open in IMG/M
3300010350\|Ga0116244_10445185	Not Available	860	Open in IMG/M
3300010350\|Ga0116244_10634592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	695	Open in IMG/M
3300010350\|Ga0116244_11053827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	516	Open in IMG/M
3300010351\|Ga0116248_10296349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1258	Open in IMG/M
3300010353\|Ga0116236_10456018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1077	Open in IMG/M
3300010353\|Ga0116236_10819738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	745	Open in IMG/M
3300010365\|Ga0116251_10649654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Enterocloster → Enterocloster clostridioformis	549	Open in IMG/M
3300012983\|Ga0123349_10501236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	846	Open in IMG/M
3300012983\|Ga0123349_10878091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	636	Open in IMG/M
3300018427\|Ga0187903_10289885	Not Available	1397	Open in IMG/M
3300018427\|Ga0187903_10539762	Not Available	920	Open in IMG/M
3300018427\|Ga0187903_10900906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	653	Open in IMG/M
3300018427\|Ga0187903_11244120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	530	Open in IMG/M
3300018427\|Ga0187903_11331365	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	505	Open in IMG/M
3300018430\|Ga0187902_10073284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3467	Open in IMG/M
3300018430\|Ga0187902_10158276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	2164	Open in IMG/M
3300018430\|Ga0187902_10598703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	919	Open in IMG/M
3300018430\|Ga0187902_11509729	Not Available	508	Open in IMG/M
3300018430\|Ga0187902_11533669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	502	Open in IMG/M
3300018493\|Ga0187909_11232980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	703	Open in IMG/M
3300018494\|Ga0187911_11440241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	688	Open in IMG/M
3300018494\|Ga0187911_12316857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	504	Open in IMG/M
3300018495\|Ga0187908_12071732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	522	Open in IMG/M
3300018878\|Ga0187910_11221557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	833	Open in IMG/M
3300019378\|Ga0187901_10463785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1006	Open in IMG/M
3300019378\|Ga0187901_10980448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	621	Open in IMG/M
3300019378\|Ga0187901_11197716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	547	Open in IMG/M
3300021254\|Ga0223824_10113596	Not Available	2467	Open in IMG/M
3300021255\|Ga0223825_12987850	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	166445	Open in IMG/M
3300021387\|Ga0223845_11004162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	529	Open in IMG/M
3300021431\|Ga0224423_10016437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7848	Open in IMG/M
3300022601\|Ga0216345_10759059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	505	Open in IMG/M
3300024270\|Ga0257091_11236716	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300025702\|Ga0209203_1025072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	2508	Open in IMG/M
3300025702\|Ga0209203_1104350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	940	Open in IMG/M
3300025702\|Ga0209203_1132271	Not Available	798	Open in IMG/M
3300025804\|Ga0256871_1145981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	729	Open in IMG/M
3300028591\|Ga0247611_11514411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium	653	Open in IMG/M
3300028797\|Ga0265301_11028180	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	593	Open in IMG/M
3300028805\|Ga0247608_11523416	Not Available	580	Open in IMG/M
3300028833\|Ga0247610_10631944	Not Available	1113	Open in IMG/M
3300028833\|Ga0247610_11072560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	808	Open in IMG/M
3300028833\|Ga0247610_11077062	Not Available	806	Open in IMG/M
3300028886\|Ga0256407_10159674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	1978	Open in IMG/M
3300028888\|Ga0247609_10000525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	52771	Open in IMG/M
3300028888\|Ga0247609_10107035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2719	Open in IMG/M
3300028888\|Ga0247609_11818959	Not Available	581	Open in IMG/M
3300028914\|Ga0265300_10436459	Not Available	896	Open in IMG/M
3300029305\|Ga0307249_10659686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	2131	Open in IMG/M
3300029305\|Ga0307249_12842420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	654	Open in IMG/M
3300029305\|Ga0307249_13067635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	614	Open in IMG/M
3300029305\|Ga0307249_13398511	Not Available	564	Open in IMG/M
3300029305\|Ga0307249_13556206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	543	Open in IMG/M
3300031555\|Ga0318466_11368848	Not Available	1103	Open in IMG/M
3300031760\|Ga0326513_10154360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1950	Open in IMG/M
3300031760\|Ga0326513_11225181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	654	Open in IMG/M
3300031760\|Ga0326513_11751735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	520	Open in IMG/M
3300031853\|Ga0326514_10020683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4562	Open in IMG/M
3300031853\|Ga0326514_10086162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2478	Open in IMG/M
3300031853\|Ga0326514_10378337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1247	Open in IMG/M
3300031853\|Ga0326514_10572982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1000	Open in IMG/M
3300031853\|Ga0326514_10789595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	834	Open in IMG/M
3300031853\|Ga0326514_11552313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp.	547	Open in IMG/M
3300031867\|Ga0326511_10068479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3118	Open in IMG/M
3300031867\|Ga0326511_10223640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO14	1811	Open in IMG/M
3300031867\|Ga0326511_10490479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1222	Open in IMG/M
3300031992\|Ga0310694_11646157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. 1001175B_160314_E1	578	Open in IMG/M
3300031993\|Ga0310696_10971452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	892	Open in IMG/M
3300031994\|Ga0310691_10498167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	1345	Open in IMG/M
3300032030\|Ga0310697_10989142	Not Available	839	Open in IMG/M
3300032038\|Ga0326512_10404661	All Organisms → Viruses → Predicted Viral	1090	Open in IMG/M
3300032038\|Ga0326512_10693847	Not Available	786	Open in IMG/M
3300032038\|Ga0326512_10718436	Not Available	769	Open in IMG/M
3300033463\|Ga0310690_10929550	Not Available	971	Open in IMG/M
3300033463\|Ga0310690_11086382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	887	Open in IMG/M
3300033463\|Ga0310690_11226464	Not Available	826	Open in IMG/M
3300033463\|Ga0310690_12376826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	553	Open in IMG/M
3300033757\|Ga0373404_0029097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	2418	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	72.82%
Engineered	Engineered	26.21%
Environmental	Environmental	0.97%

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	72.82%
Wastewater	Engineered → Wastewater	25.24%
Terrestrial	Environmental → Terrestrial	0.97%
Bioreactor	Engineered → Bioreactor	0.97%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	72.82%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	25.24%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.97%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.97%

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	40.78%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	32.04%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	25.24%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.97%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	40.78%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	32.04%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	25.24%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.97%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	33.98%
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	25.24%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	25.24%
Capybara Group Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal	4.85%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	3.88%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	2.91%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	1.94%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.97%
Anaerobic Digester Leachate	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Leachate	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2075704000	Bovine rumen microbial communities from Vernon, TX, USA, Sample 511	Host-Associated	Open in IMG/M
3300007961	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - LMS_cellobiose_enrichment	Environmental	Open in IMG/M
3300009666	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG	Engineered	Open in IMG/M
3300009670	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG	Engineered	Open in IMG/M
3300009682	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG	Engineered	Open in IMG/M
3300009693	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG	Engineered	Open in IMG/M
3300009713	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC107_MetaG	Engineered	Open in IMG/M
3300009720	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG	Engineered	Open in IMG/M
3300009772	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC105_MetaG	Engineered	Open in IMG/M
3300009775	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC109_MetaG	Engineered	Open in IMG/M
3300009778	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC117_MetaG	Engineered	Open in IMG/M
3300010270	Capybara group fecal microbial communities from Wisconsin, USA - P827 metagenome	Host-Associated	Open in IMG/M
3300010282	Capybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome	Host-Associated	Open in IMG/M
3300010344	AD_JPASca	Engineered	Open in IMG/M
3300010346	AD_USMOca	Engineered	Open in IMG/M
3300010350	AD_HKSTca	Engineered	Open in IMG/M
3300010351	AD_USPNca	Engineered	Open in IMG/M
3300010353	AD_USCAca	Engineered	Open in IMG/M
3300010365	AD_USDIca	Engineered	Open in IMG/M
3300012983	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome	Host-Associated	Open in IMG/M
3300018427	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol	Host-Associated	Open in IMG/M
3300018430	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol	Host-Associated	Open in IMG/M
3300018493	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3	Host-Associated	Open in IMG/M
3300018494	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2	Host-Associated	Open in IMG/M
3300018495	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2	Host-Associated	Open in IMG/M
3300018878	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1	Host-Associated	Open in IMG/M
3300019378	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol	Host-Associated	Open in IMG/M
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300022601	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol (v2)	Host-Associated	Open in IMG/M
3300024270	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1 Spades (v3)	Host-Associated	Open in IMG/M
3300025702	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC109_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025804	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_07 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028797	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04	Host-Associated	Open in IMG/M
3300028805	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated	Open in IMG/M
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300028914	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03	Host-Associated	Open in IMG/M
3300029305	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.	Host-Associated	Open in IMG/M
3300031555	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.(v2)	Host-Associated	Open in IMG/M
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated	Open in IMG/M
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated	Open in IMG/M
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated	Open in IMG/M
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated	Open in IMG/M
3300031993	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)	Host-Associated	Open in IMG/M
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated	Open in IMG/M
3300033463	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)	Host-Associated	Open in IMG/M
3300033757	Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S62W2 SP	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
RmDRAFT_14917760	2075704000	Bovine Rumen	MEMTMAEKRDLIERITDLVKNDILNKEDRDDIYRVCLVACDRELAKLKEERDV
RmDRAFT_07324010	2075704000	Bovine Rumen	MAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK
RmDRAFT_12712920	2075704000	Bovine Rumen	MDMTMAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK
Ga0079305_10359292	3300007961	Deep Subsurface	MGTEMETEMELTMAEKRDLLERIRELVMNGILNKADRDDIYRICLVACDRELAKLKEAT*
Ga0116182_100005151	3300009666	Anaerobic Digestor Sludge	LLKRVIGDMDLTMAEKRDLIERITELVKNDILNKEDRDNIFRVCLAACSRELAKLKEE*
Ga0116183_12813321	3300009670	Anaerobic Digestor Sludge	MLEVKIPLEMTMAEKRDLIERITELVKNNILNKEDRDDIFRVCLAACSRELAKLKEE*
Ga0116172_102949111	3300009682	Anaerobic Digestor Sludge	IERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0116141_104916382	3300009693	Anaerobic Digestor Sludge	MELTMVERRDLIERVTELAKIGVLKKEDRDDIYRVCLVACDREMARMRKEK*
Ga0116163_11031381	3300009713	Anaerobic Digestor Sludge	MKWMEERMDLTMAEKRELIERITELAKIDVLKKEDRDDIYRVCL
Ga0116159_13992562	3300009720	Anaerobic Digestor Sludge	MPMAEKRDLLERIRELALHDILSKEDRDDIFRVCMVACDRELAKLKKEE*
Ga0116162_102381622	3300009772	Anaerobic Digestor Sludge	MGCGSFEEALMDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0116162_102719021	3300009772	Anaerobic Digestor Sludge	MKLTMAEKRDLIERVTELVKADVLNRADRDDIFRVCLVACDRELSQIKKQKED*
Ga0116162_102964922	3300009772	Anaerobic Digestor Sludge	MKWMEERMDLTMAEKRELIERITELAKIDVLKKEDRDDIYRVCLVACDREMARMRKEK*
Ga0116164_101363801	3300009775	Anaerobic Digestor Sludge	EKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0116164_102556671	3300009775	Anaerobic Digestor Sludge	MDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDRE
Ga0116151_100446174	3300009778	Anaerobic Digestor Sludge	MDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0116151_103220351	3300009778	Anaerobic Digestor Sludge	MSSGSFEEELMDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0129306_10218672	3300010270	Capybara Group Fecal	MLENGGGQLLELTMAEKRDLLERIRELVLIDVIRKEDRDAIFRVCMAACGRELAKLKDEKEE*
Ga0129307_10301671	3300010282	Capybara Group Fecal	MELTMVERRDLIERVTELAKIGVLKKEDRDDIFRVCMVACDREMARMRKEK*
Ga0129307_10509912	3300010282	Capybara Group Fecal	MELTIAEKRDLIERITELAKHDVLNREDRDDIFRICLVACDREMAKLNKKKEG*
Ga0129307_10567642	3300010282	Capybara Group Fecal	MAEKRDLLERIRELVLIDVIRKEDRDAIFRVCMAACGRELAKLKDEKEE*
Ga0129307_10645572	3300010282	Capybara Group Fecal	MVEKRDLIERITELVKNDILNREDRDNIFRVCLAACGRELAKLKEE*
Ga0116243_102013852	3300010344	Anaerobic Digestor Sludge	MTMAEKRDLLERIRELALHDILSKEDRDDIFRVCMVACDRELAKLKKEE*
Ga0116243_108774542	3300010344	Anaerobic Digestor Sludge	MDLTMAEKRDLIELITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0116239_108417362	3300010346	Anaerobic Digestor Sludge	MELTMAEKRDLLERVRELVINGVLNKADRDDIFRVCLAACDRELAKMKEDGTDGT*
Ga0116244_104451851	3300010350	Anaerobic Digestor Sludge	ASGSFRLEALMDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ*
Ga0116244_106345922	3300010350	Anaerobic Digestor Sludge	MDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCL
Ga0116244_110538272	3300010350	Anaerobic Digestor Sludge	MELTMAEKRELIERITELAKINVLKKEDRDDIYRVCLVACDREMARMRKEQ*
Ga0116248_102963492	3300010351	Anaerobic Digestor Sludge	MELTMVERRDLIERVTELAKIGVLKKEDRDDIFRVCLVACDREMAKMRKEQ*
Ga0116236_104560182	3300010353	Anaerobic Digestor Sludge	MDLTMAEKRDLIERITELAKIDGLKKEDRDDIYRVCLVACDREM
Ga0116236_108197382	3300010353	Anaerobic Digestor Sludge	MGCGSFEEALMDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKIGKEQ*
Ga0116251_106496542	3300010365	Anaerobic Digestor Sludge	MELTMVERRDLIERVTELAKIGVLKKEDRDDIYRVCLVACDREM
Ga0123349_105012362	3300012983	Fecal	MELTMAEKRDLIERITELVKNDVLNREDRDSIYRVCLAACGRELAKMKEE*
Ga0123349_108780912	3300012983	Fecal	MGTEMELTMAEKRDFLERITDLVKNDVLNREDRDSIYRICMAACGRELAKMREE*
Ga0187903_102898852	3300018427	Goat Feces	MLENGGGQLLELTMAEKRDLLERIRELVLIDVIRKEDRDAIFRVCMAACGRELAKLKNEKEE
Ga0187903_105397622	3300018427	Goat Feces	MELTMAEKRDLIERVTELVKHDVLKREDRDDIFRVCLVACDREMAKLKEE
Ga0187903_109009062	3300018427	Goat Feces	MDLTTAEKRDLIERITELTEFDVLKKEDRDDIYRVCLVACDREMAKMRREK
Ga0187903_112441202	3300018427	Goat Feces	METEMELTMAEKRDLLERIRELVMNGILNKADRDDIYRICLVACDRELAKLKEAT
Ga0187903_113313652	3300018427	Goat Feces	MQMTMAEKRDLLERIRELTLHDVLTREDRDDIFRVCMVACDRELAKLKKEE
Ga0187902_100732848	3300018430	Goat Feces	MAEKRDLIERITELVKNDILNKEDRDDIYRVCMVACDRELAKLKEE
Ga0187902_101582763	3300018430	Goat Feces	MKMTMAEGRDLIERITDLVKNDILNKEDRDDIYRVCLVACDRELAKLKEERDV
Ga0187902_105987033	3300018430	Goat Feces	MLENGGGQLLELTMAEKRDLLERIRELVLIDVIRKEDRDAILRVCMAACGRELAKLKDEKEE
Ga0187902_115097291	3300018430	Goat Feces	RIRELTLHDVLTREDRDDIFRVCMVACDRELAKLKKEE
Ga0187902_115336691	3300018430	Goat Feces	LQRNEGRELTMAEKRELIGRIAELVKNDILNRDDRRDIYRVCMA
Ga0187909_112329802	3300018493	Goat Feces	MKMTMAEKRDLIERITDLVKNDILNKEDRDDIYRVCLVACDRELAKLKEERDV
Ga0187911_114402412	3300018494	Goat Feces	MDLTMAEKRDLIERITELVKNDILNKEDRDNIFRVCLAACSRELAKLKEE
Ga0187911_123168572	3300018494	Goat Feces	LEMTMAEKRDLIERITELVKHDVLKKEDRDDIFRVCLAACS
Ga0187908_120717322	3300018495	Goat Feces	MELTMAEKRDLIERITELVKNNVLNREDRDNIYRVCLVACGRELAKMKEE
Ga0187910_112215572	3300018878	Goat Feces	MAEKRDLIERITELAKNDILNKEDRDNIFRVCLAACSRELAKLKEE
Ga0187901_104637852	3300019378	Goat Feces	MQMTMAEKRDLLERIRELTQHDVLTREDRDDIFRVCMVACDRELAKLKKEE
Ga0187901_109804482	3300019378	Goat Feces	LEMTMAEKRDLIERITELVKNNILNKEDRDDIFRVCLAACSRELAKLKEE
Ga0187901_111977162	3300019378	Goat Feces	MDLTTAEKRDLIERITELTKFDVLKKEDRDDIYRVCLVACDREFLKLHQKKED
Ga0223824_101135962	3300021254	Cattle And Sheep Rumen	VGLLEEEIPLELTMAEKRDLIERITELVKNDILNKQDRNDIFRVCLAACSRELAKLKG
Ga0223825_12987850168	3300021255	Cattle And Sheep Rumen	MDLTAFEKRDLIGRVTELAKINVIKKQDRDDIYRICMIACDRAIAEMKERQK
Ga0223845_110041622	3300021387	Cattle And Sheep Rumen	MDLTMAEKRDLIERITELVKNDILNKEDRDDIYRVCMVACDRELAKLKEE
Ga0224423_100164371	3300021431	Cattle And Sheep Rumen	IPLELTMAEKRDLNERITELVKNDILNKQDRNDIFRVCLAACSRELAKLKG
Ga0216345_107590591	3300022601	Goat Feces	VSGSFKLEAIMDLTTAEKRDLIERITELTEFDVLKKEDRDDIYRVCLVACDREMAKMRRE
Ga0257091_112367162	3300024270	Goat Feces	MAEKRDLIVRITELVKNEILNKEDRDNIFRVCLAACSRELAKLKEE
Ga0209203_10250723	3300025702	Anaerobic Digestor Sludge	MDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKMRKEQ
Ga0209203_11043502	3300025702	Anaerobic Digestor Sludge	MKLTMAEKRDLIERVTELVKADVLNRADRDDIFRVCLVACDRELSQIKKQKED
Ga0209203_11322711	3300025702	Anaerobic Digestor Sludge	VFVMKWMEERMDLTMAEKRELIERITELAKIDVLKKEDRDDIYRVCLVACDREMARMRKE
Ga0256871_11459813	3300025804	Rumen	ELVKNNILNKEDRDDIFRVCLAACGRELAKLKTES
Ga0247611_115144113	3300028591	Rumen	MELTMAEKRDLIERVTDLVKNDVLNREDRDDIYRVCLAACDR
Ga0265301_110281801	3300028797	Rumen	MQMTMAEKRDLLERIRELALHDILNKEDRDTIFRVCMVACDRELAKLKKEE
Ga0247608_115234162	3300028805	Rumen	LTMAEKRDLIERITELVKDGILNKEDRDNIFRVCLAACSRELAKLKEE
Ga0247610_106319442	3300028833	Rumen	LQMTMAEKRDFLERIRELTLNDVIQKEDRDDIYRVCMVACDREMAKLKEE
Ga0247610_110725602	3300028833	Rumen	MDLTTAEKRDLIERITELTKFDVLKKEDRDDIYRVCLVACDREMAKMRREK
Ga0247610_110770622	3300028833	Rumen	DLIERITELVKNDILNKEDRDNIFRVCLAACGRELAKLKEE
Ga0256407_101596742	3300028886	Rumen	MDLTMAEKRDLIERITELAKIDVLKKEDRDDIYRVCLVACDREMAKIGKEQ
Ga0247609_1000052569	3300028888	Rumen	MELTMAEKRDLIERVTDLVKNDVLNREDRDDIYRVCLAACDRELAKLKEE
Ga0247609_101070352	3300028888	Rumen	LQMTMVEKRDFIERITSLTMHDVLSKEDRNDIYRLCMVACDREMAKLKEEK
Ga0247609_118189591	3300028888	Rumen	EKRDLIERITVLVKNDILNKQDRNDIFRVCLAACSRELAKLKED
Ga0265300_104364592	3300028914	Rumen	TMAEKRDFIEKITDLVKNDVLNREDRDSIYRVCLAACGRELAKMKEE
Ga0307249_106596861	3300029305	Goat Feces	LIERVTELVKHDVLKREDRDDIFRVCLVACDREMAKLKEE
Ga0307249_128424202	3300029305	Goat Feces	LDEKELTQAEKRDLIERITELVKINVLNRDDRRDIYCVCMVACDRELGKLRKEQ
Ga0307249_130676352	3300029305	Goat Feces	MELTMAEKRDLIERITELAKIDVLNKEDRDDIYRVCLVACDREMARMKEGNTDGT
Ga0307249_133985112	3300029305	Goat Feces	MELTMAEKRDLIERITELVKNNVLNREDRDNIYRVCLVACGR
Ga0307249_135562062	3300029305	Goat Feces	METEMEIEMELTMAEKRDLLERIRELVMNGILNKADRDDIYRICLVACDRELAKLKEAT
Ga0318466_113688481	3300031555	Goat Feces	QMEERMELTMAEKRDLIERVTELVKHDVLKREDRDDIFRVCLVACDREMAKLKEE
Ga0326513_101543602	3300031760	Rumen	MTMAEKRDFLERIRDLTLHDVLNREDRDTIFRVCMAACEREMANLKEGQ
Ga0326513_112251812	3300031760	Rumen	MELTMTEKRDLIERITELVKNDVLNREDRDSIYQVCLAACGRELAKMKEE
Ga0326513_117517351	3300031760	Rumen	MELTKAEKRDLIERITELAKYDVLKREDRDSIYRVCLVACGRELAKMKEE
Ga0326514_100206832	3300031853	Rumen	LEMTMAEKRDLIERITELVKNDILNKEDRDNIFRVCLAACSRELAKLKEE
Ga0326514_100861621	3300031853	Rumen	MELTMAGKRDLIERVTELVKNDILNKEDRDDISRVCLAACSRELAKLNAAE
Ga0326514_103783372	3300031853	Rumen	LELTMSEKRDLIERVTELVKHDVLNRSDRDDIFRVCLVACDRELSKIRKGDR
Ga0326514_105729823	3300031853	Rumen	LPMTMAEKRDFLERIRDLTLHDVLNREDRDTIFRVCMAACEREMANLKEGQ
Ga0326514_107895952	3300031853	Rumen	MLLFLDMELTMAGKRDLIERITELVKNDILNKEDRDDIFRVCLAACSRELAKLNAAE
Ga0326514_115523132	3300031853	Rumen	MDMTMTEKRDLLERIRQLALIDVLKKEDRDDIYRVCMVACDREMAKLKEEK
Ga0326511_100684796	3300031867	Rumen	LPMTMAEKRDFLERIRDLTLHDVLNREDRDTIFRVCMAACEREM
Ga0326511_102236401	3300031867	Rumen	VEKRDFIELITSLTMHDVLSKEDRNDIYRLCMVACDREMAKLKEEK
Ga0326511_104904791	3300031867	Rumen	MQMTMAEKRDFLERIRDLTLHDVLNREDRDTIFRVCMAACEREM
Ga0310694_116461571	3300031992	Rumen	MLLFLDMELTMAGKRDLIERITELVKNDILNKEDRDDIFRVCLAACSRELAKLKEE
Ga0310696_109714522	3300031993	Rumen	LQMTMAEKRDFIERITSLTMHDVLSKEDRNDIYRLCMVACDREMAKLKEEK
Ga0310691_104981672	3300031994	Rumen	MAEKRDLIERITELVKDGILNKEDRDNIFRVCLAACSRELAKLKEE
Ga0310697_109891422	3300032030	Rumen	KLNLLKRVIGDMDLTMAEKRDLIERITELVKNDILNKEDRDNIFRVCLAACSRELAKLKE
Ga0326512_104046612	3300032038	Rumen	MELTTVERRDLIERVTELTKNDILNRSDRDDIFRVCLAACDRELAKIKEGES
Ga0326512_106938472	3300032038	Rumen	LTKAEKRDLIERITELAKYDVLKREDRDSIYRVCLVACGRELAKMKEE
Ga0326512_107184362	3300032038	Rumen	KRDLIERVTELVKHDVLDRSDRDDIFRVCLAACGRELSKIRKGDR
Ga0310690_109295501	3300033463	Rumen	MQMTMAEKRDLLERIRELALHDILNKEDRDTIFRVCMVACDRELAKL
Ga0310690_110863822	3300033463	Rumen	LEQNRELTMAEKREFIERLTELIKNNVLNRDDRKNIYLICMAACEREMSKREE
Ga0310690_112264642	3300033463	Rumen	MAEKRDLIERVTELVKHDVLKREDRDDIFRVCLVACDREMAKLKEE
Ga0310690_123768262	3300033463	Rumen	LEMTVAEKRDLIERITELVKNDILNKEDRDDIFRVCLAACG
Ga0373404_0029097_4_159	3300033757	Anaerobic Digester Leachate	MDLTMAEKRELIERITELAKIDVLKKEDRDDFYRVCLVACDREMAKMRKEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098660

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences