3300010282: Capybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010282
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147143 | Ga0129307
• Sample Name: Capybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 298610105
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
Not Available	2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → Candidatus Methanomethylophilaceae → unclassified Candidatus Methanomethylophilaceae → Candidatus Methanomethylophilaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F076635	Metagenome / Metatranscriptome	118	Y
F082888	Metagenome	113	Y
F093041	Metagenome / Metatranscriptome	106	Y
F097402	Metagenome / Metatranscriptome	104	N
F098660	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129307_1000677	All Organisms → cellular organisms → Bacteria	48492
Ga0129307_1010927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3287
Ga0129307_1023903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1653
Ga0129307_1024543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1618
Ga0129307_1030167	Not Available	1358
Ga0129307_1046459	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → Candidatus Methanomethylophilaceae → unclassified Candidatus Methanomethylophilaceae → Candidatus Methanomethylophilaceae archaeon	953
Ga0129307_1048986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	914
Ga0129307_1050991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	885
Ga0129307_1056764	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct7Q419	812
Ga0129307_1064557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	736
Ga0129307_1082410	Not Available	611

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129307_1000677	Ga0129307_100067734	F082888	MEEDNMSQIIEINVENQEYQIEWALSEYFDELKGMKFMLNSVAADQIVMINNLSETAKILLSAVAGAVIQYLIDNNCPIDSIFESGYFIIRK*
Ga0129307_1010927	Ga0129307_10109271	F093041	MMAKSQNAFRRAALRRSKTALLFCHISIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAIR*
Ga0129307_1023903	Ga0129307_10239031	F093041	MLPLFHYNDYMMAKSQNAFRRAALRHSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLVAKSIELSIDFAIR*
Ga0129307_1024543	Ga0129307_10245431	F093041	DYMMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAIR*
Ga0129307_1030167	Ga0129307_10301671	F098660	MELTMVERRDLIERVTELAKIGVLKKEDRDDIFRVCMVACDREMARMRKEK*
Ga0129307_1046459	Ga0129307_10464593	F076635	MMIKRGSRVRVVKMDTAGGMDWQAKRLEGKVFTVRFIDSAGQIHLEETGIALIPGVDEYEILK*
Ga0129307_1048986	Ga0129307_10489862	F097402	MTNLDHIQSLIRHGAQLRGEDGSLTPLTEAFYHKAVEACHAGGYNAATYDLVIPGIDSELWLAIWKDGHADSGSPQSICACLAR*
Ga0129307_1050991	Ga0129307_10509912	F098660	MELTIAEKRDLIERITELAKHDVLNREDRDDIFRICLVACDREMAKLNKKKEG*
Ga0129307_1056764	Ga0129307_10567642	F098660	MAEKRDLLERIRELVLIDVIRKEDRDAIFRVCMAACGRELAKLKDEKEE*
Ga0129307_1064557	Ga0129307_10645572	F098660	MVEKRDLIERITELVKNDILNREDRDNIFRVCLAACGRELAKLKEE*
Ga0129307_1082410	Ga0129307_10824102	F026592	LRTASPQGIAALAAQGGVATLTEQSDRAFSVKQFSAEIE*