2075704000: Bovine rumen microbial communities from Vernon, TX, USA, Sample 511

Overview

Basic Information

• IMG/M Taxon OID: 2075704000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046171 | Gp0051735 | Ga0011158
• Sample Name: Bovine rumen microbial communities from Vernon, TX, USA, Sample 511
• Sequencing Status: Permanent Draft
• Sequencing Center: Texas A and M University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 615647036
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bovine Rumen Microbial Communities From Vernon, Tx, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Vernon, Texas
• Coordinates
  • Lat. (^o): 34.154
  • Long. (^o): -99.264
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048702	Metagenome / Metatranscriptome	147	Y
F059440	Metagenome / Metatranscriptome	134	Y
F081939	Metagenome / Metatranscriptome	114	N
F082888	Metagenome	113	Y
F098660	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
RmDRAFT_ConsensusfromContig1116670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens	3814
RmDRAFT_ConsensusfromContig1122983	Not Available	820
RmDRAFT_ConsensusfromContig1229778	All Organisms → cellular organisms → Bacteria	639
RmDRAFT_ConsensusfromContig1562657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	3629
RmDRAFT_ConsensusfromContig232092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	967
RmDRAFT_ConsensusfromContig236396_1967628	Not Available	648
RmDRAFT_ConsensusfromContig252730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
RmDRAFT_ConsensusfromContig1116670	RmDRAFT_14917760	F098660	MEMTMAEKRDLIERITDLVKNDILNKEDRDDIYRVCLVACDRELAKLKEERDV
RmDRAFT_ConsensusfromContig1122983	RmDRAFT_01201800	F048702	MDKRMNKKTGEELQQYLAWRRKGSSVPSKKGKGSYNRKDFKKGVA
RmDRAFT_ConsensusfromContig1229778	RmDRAFT_09015000	F059440	MGKTRLEREAEFKAKIAELDEYVKKMNAKSNKTDEEVDEVISAMQLTNKYLRAIGASEEEMYDI
RmDRAFT_ConsensusfromContig1562657	RmDRAFT_12645720	F081939	MAKKTLSKKEKVGMLADKLNEAIESCNFEPTEELDLFAEAVALLIAYWGKVSDWTPIEKASYVGYVTTTVMEKGLDVAIKDFDEYRKSLNTKFGN
RmDRAFT_ConsensusfromContig232092	RmDRAFT_07324010	F098660	MAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK
RmDRAFT_ConsensusfromContig236396_1967628	RmDRAFT_12712920	F098660	MDMTMAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK
RmDRAFT_ConsensusfromContig252730	RmDRAFT_10895850	F082888	MSQIIEIIVENKKYQIEWALSEYFGELKGKKFMLNEVAADQIVMIKNLSETAKILLSAVAGAVIQYLIDNNCQISSIFENGYFIIKND