3300010270: Capybara group fecal microbial communities from Wisconsin, USA - P827 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010270
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147142 | Ga0129306
• Sample Name: Capybara group fecal microbial communities from Wisconsin, USA - P827 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 290838148
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium F083	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041506	Metagenome / Metatranscriptome	160	Y
F076635	Metagenome / Metatranscriptome	118	Y
F081939	Metagenome / Metatranscriptome	114	N
F084966	Metagenome	111	Y
F098660	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129306_1004287	All Organisms → cellular organisms → Bacteria	9450
Ga0129306_1009673	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	3947
Ga0129306_1017756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	2184
Ga0129306_1021867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1804
Ga0129306_1055230	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium F083	796

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129306_1004287	Ga0129306_10042872	F084966	MLMLSLDDAAKVAKRLVADGVDDDEIIRQELEQKCWIPPESSKAAKDLNDLIFDINPAEICSQIEADNLRQWCDILQAEMKMAMVQLPCWANGDDNE*
Ga0129306_1009673	Ga0129306_10096736	F041506	MNKVYTLEDNDGLLAELKSMRGKMAEMRGRLERDEITPDEWRQWHAGYRARLDEIKEAISGMRDEISLRNADLERQKHERAAELNMTFEEYENYLKSLIIS*
Ga0129306_1017756	Ga0129306_10177563	F076635	MIKRGSKIRVVKMDTAGGMDWQAKRLEGKIFTVRFIDSAGQIHLEETGLALIPGVDEYEILK*
Ga0129306_1021867	Ga0129306_10218672	F098660	MLENGGGQLLELTMAEKRDLLERIRELVLIDVIRKEDRDAIFRVCMAACGRELAKLKDEKEE*
Ga0129306_1055230	Ga0129306_10552302	F081939	MVKKKQKAMTKREKVGMLADKLNEAINSCKLEPTEELDIFAESVALLIAYWGKISDWSPIEKASYVGYVTTTVLEKGLDAEIKSFEEHRKSMKPQIGN*