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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033757 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0130338 | Gp0401315 | Ga0373404 |
| Sample Name | Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S62W2 SP |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 738469035 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 25 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin066 | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → PVC group | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → Candidatus Micrarchaeia → Candidatus Micrarchaeales → Candidatus Micrarchaeaceae → Candidatus Micrarchaeum → Candidatus Micrarchaeum acidiphilum → Candidatus Micrarchaeum acidiphilum ARMAN-2 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA012 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomes From Anaerobic Digester Of Solid Waste |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Leachate → Metagenomes From Anaerobic Digester Of Solid Waste |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | University of Toronto, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 43.6629 | Long. (o) | -79.3957 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F015738 | Metagenome / Metatranscriptome | 252 | Y |
| F030405 | Metagenome / Metatranscriptome | 185 | Y |
| F039153 | Metagenome / Metatranscriptome | 164 | Y |
| F045540 | Metagenome | 152 | Y |
| F050940 | Metagenome | 144 | Y |
| F051554 | Metagenome | 144 | Y |
| F053745 | Metagenome | 140 | Y |
| F058971 | Metagenome / Metatranscriptome | 134 | N |
| F063339 | Metagenome | 129 | Y |
| F066219 | Metagenome / Metatranscriptome | 127 | Y |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F071272 | Metagenome / Metatranscriptome | 122 | N |
| F072819 | Metagenome | 121 | N |
| F078673 | Metagenome / Metatranscriptome | 116 | Y |
| F080092 | Metagenome / Metatranscriptome | 115 | Y |
| F085739 | Metagenome / Metatranscriptome | 111 | N |
| F086799 | Metagenome / Metatranscriptome | 110 | Y |
| F088079 | Metagenome / Metatranscriptome | 109 | N |
| F089856 | Metagenome | 108 | Y |
| F093744 | Metagenome / Metatranscriptome | 106 | Y |
| F098660 | Metagenome / Metatranscriptome | 103 | Y |
| F103106 | Metagenome | 101 | Y |
| F103990 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0373404_0004023 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 11855 | Open in IMG/M |
| Ga0373404_0005013 | All Organisms → cellular organisms → Bacteria | 9718 | Open in IMG/M |
| Ga0373404_0007576 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum | 6811 | Open in IMG/M |
| Ga0373404_0017289 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3516 | Open in IMG/M |
| Ga0373404_0029097 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens | 2418 | Open in IMG/M |
| Ga0373404_0030590 | All Organisms → cellular organisms → Bacteria | 2331 | Open in IMG/M |
| Ga0373404_0038495 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium | 1982 | Open in IMG/M |
| Ga0373404_0048379 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin066 | 1692 | Open in IMG/M |
| Ga0373404_0072049 | All Organisms → Viruses → Predicted Viral | 1281 | Open in IMG/M |
| Ga0373404_0081452 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium | 1172 | Open in IMG/M |
| Ga0373404_0086784 | Not Available | 1121 | Open in IMG/M |
| Ga0373404_0098220 | All Organisms → cellular organisms → Bacteria → PVC group | 1024 | Open in IMG/M |
| Ga0373404_0110078 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → Candidatus Micrarchaeia → Candidatus Micrarchaeales → Candidatus Micrarchaeaceae → Candidatus Micrarchaeum → Candidatus Micrarchaeum acidiphilum → Candidatus Micrarchaeum acidiphilum ARMAN-2 | 945 | Open in IMG/M |
| Ga0373404_0114907 | Not Available | 916 | Open in IMG/M |
| Ga0373404_0120800 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 884 | Open in IMG/M |
| Ga0373404_0124252 | Not Available | 866 | Open in IMG/M |
| Ga0373404_0137518 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 805 | Open in IMG/M |
| Ga0373404_0153250 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 745 | Open in IMG/M |
| Ga0373404_0195729 | All Organisms → cellular organisms → Bacteria | 626 | Open in IMG/M |
| Ga0373404_0208020 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA012 | 600 | Open in IMG/M |
| Ga0373404_0239183 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 545 | Open in IMG/M |
| Ga0373404_0243584 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 538 | Open in IMG/M |
| Ga0373404_0247087 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 533 | Open in IMG/M |
| Ga0373404_0256105 | Not Available | 520 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0373404_0004023 | Ga0373404_0004023_8004_8297 | F015738 | MWSRVDRDLYPEIEKAIGEVFPGESDRVRLAAVEVWGVVMNRVPESGHIEGVSWCRHFDRPIDHHLVKEDRPACIEERNGCGNCPESTYRVHRVTDR |
| Ga0373404_0005013 | Ga0373404_0005013_5658_6050 | F103990 | MNQKLNDDINEVVRLITIEKRLGKTSIAKEDATFVRTLADKKRYPRAEYVLARMYLCGYQVEQDKALGLKYLSRSSRHASYSLQLKIAYIYHLLGDFYLITKCLKRAIDDCTWHKPPNSTLRKSHRKNDN |
| Ga0373404_0006414 | Ga0373404_0006414_5576_6040 | F066219 | MKVFLVFLILCIGCLIHANIVEFFESIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVADTKYGAFNFGPFIVVEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW |
| Ga0373404_0007576 | Ga0373404_0007576_1_246 | F088079 | MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNV |
| Ga0373404_0017289 | Ga0373404_0017289_355_648 | F086799 | MKAKKVIYSRLISKGNYENAKIEIELEVEENESAGYVFQCAKEWVENRIAIEKVSDYKVEQARKVMDDKRNHTLAQIEEAEEILAKSKNIQDEGLPF |
| Ga0373404_0029097 | Ga0373404_0029097_4_159 | F098660 | MDLTMAEKRELIERITELAKIDVLKKEDRDDFYRVCLVACDREMAKMRKEK |
| Ga0373404_0030590 | Ga0373404_0030590_2071_2271 | F063339 | MNATQNTVGTTDQFHQTWQVLMQQLERVLSLAHQRRPNRTETRESVSIAKHLLGKVGDQIDAAIQE |
| Ga0373404_0038495 | Ga0373404_0038495_128_496 | F050940 | MGVIPGNCYYKRFDGGLCNNNYQFYVGLNTLREGEVFASDERITCSYPGFHFASKSWCAAYYAHRPLEALIRIPLDAQINEPWATDGKASADKIEILQVWDTKTGEDVTDLYRRQDNKEASK |
| Ga0373404_0048379 | Ga0373404_0048379_395_763 | F085739 | MREIPIAGETCCANCVHDATCSHRSALPGIALICDHFVNRTFPPEVQDAIQAGACCHICAAPALIGGGGRVTCGNCLLAQAAAKAKIGDKIIKEWRGTVTTPPAPMFEAGADPDEVEEEGGV |
| Ga0373404_0072049 | Ga0373404_0072049_2_682 | F070158 | MEAQKMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTVKEVSEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVH |
| Ga0373404_0081452 | Ga0373404_0081452_30_452 | F071272 | VFDKIISGEMKITDMDDWEIITRTAFSEWLRGLETAAKTRVYKAAVDHIADTMAAGAWQDGPAPKDGSWILGLFYGLPYVVCYDSWEISEEGGPKETEEGWCLAGQDMHPMDQDEPEKWARIIHPNRHMPASWDGPGDQR |
| Ga0373404_0086784 | Ga0373404_0086784_491_1120 | F080092 | MKYIAAVFTSLLFLLLICSLPSHAVVSSTVFSNGGSIIINTDESWETSNNLMRFGTVNDSYEYGGKSQTIVSLGRTGIMKSDSTRVETLGMLNAFDSAGMFSTQTNIPESMCDQSNFIAGYGNQSSSRYPETQTVEGLWGLMGSGPGTTYESQVEVNGKVVGVSVKGTTPSGYLYEDVKGSLKSGLDKNSSLMQYSYSRHDHGVLNSDTN |
| Ga0373404_0098220 | Ga0373404_0098220_1_573 | F089856 | VLAAALLFSAGCANFGAPRNATAAIPCTYRFKMLSRPTDQERVERAIRAVAAGPVAKSGTVAYPEYRFHVARLADLDRLHPELLFDNPDALLAANRRQTLNLRAAGVDFTFDSTDVSASAAITVTFHVKPGSRLYYKHPGGVESDITAKVDKQGKVTLPTSIKEGQKFIYARAVKDNVNRYIRINIFNNDV |
| Ga0373404_0110078 | Ga0373404_0110078_198_356 | F000388 | MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIMDANEKLVKELKDGSK |
| Ga0373404_0114907 | Ga0373404_0114907_87_245 | F000388 | MKIIKVTKEYFETEDEKVFFFDPLDKSISIEDMQKIVDANEKLVKELKDGSK |
| Ga0373404_0120800 | Ga0373404_0120800_208_759 | F039153 | MKYNVITSEATKQYNTAVQFFNNSNESRNVNFTPFHKEIKQWAKHQGYSAKLYLRSAAIECINPVLPKEPECLLVDLIQVIANGRTYLIAIDILGPYENNLHYILKEHARLRKAIYVEAESLDDVICEIQENECNRNGLPCVPDIKFRTSFLGDYSSLFAPENLIWKTTRHEPSKHRRNEASK |
| Ga0373404_0124252 | Ga0373404_0124252_562_816 | F093744 | MVNNIVINVLISIGMINIGGYNMGFKIGDRVEVNYPIDDFQGHIGIVKKIITDTELIPGKTVVICYWAFLDKEIAFYESSLDLI |
| Ga0373404_0137518 | Ga0373404_0137518_648_803 | F103106 | IEGLDLIEIVVPSYKYARRKGLTDDDAEATVNWALKQAIIILEQLIGATDE |
| Ga0373404_0153250 | Ga0373404_0153250_374_745 | F072819 | MAMCHGIGACIRRRDQTGDRVSIRVGITTRRGIVNVTLIHGEDMLQDQEKADKASFKAALLENENTVNELIYFCRNNLNDLTVQCFTHKRFMGVQAFIDALRLAYQELGVEGEKGNVSDFVLFV |
| Ga0373404_0195729 | Ga0373404_0195729_2_349 | F045540 | MLKYIYTLATLLDSKSKIRKHYSPETVISDLFDEDLDEIDFIKSLSELELIYGFEIPEDLYDKTDLTLGEFADELSHIPVIPDELYPEFFDIKFTSMKLTKRYIELENKTDANSVR |
| Ga0373404_0208020 | Ga0373404_0208020_43_207 | F078673 | MKIDVGIQCIITRENGEQIVVDEVSSIAVVIEFMGQKFHIFKTMDGLVLNGGWK |
| Ga0373404_0239183 | Ga0373404_0239183_266_373 | F030405 | MQGYDDDLFILALAKTVTPGGSPRREPGQAAPLTT |
| Ga0373404_0243584 | Ga0373404_0243584_269_526 | F058971 | MSLDIEPITMMWNGQAISLPGTYELVPDNEIKHLHKRVVAVALHERRRVPLYGRVVGKARYGKHSVWLIEDDNGNLVKAQKPMEI |
| Ga0373404_0247087 | Ga0373404_0247087_57_533 | F051554 | MTFQLKYYVPFKAAEGVNADLALKEGILPIEGTAIDTSVNANKWQVPAEDLDFFTASLKGAQLRIDHAESVLSIVGKVPEAIRSGNQVFFQAEVGDPSIIPKILRGYVNHVSVQVDSDDTQCSVCGKQTRIEGILTHLCAGAWEIVHKPHVRELSIVAS |
| Ga0373404_0256105 | Ga0373404_0256105_217_519 | F053745 | MATQVKVTHDPEGSLIKKPSYLIELENKWKRWTGIEDKEAFEALKDLSGDLWSELRKLEALLCKETENRQFPDDFKEFQKARIRDAWRDIIGHQKIGLDKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |