NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F096734

Metagenome / Metatranscriptome Family F096734

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F096734
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 39 residues
Representative Sequence LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSF
Number of Associated Samples 89
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 8.16 %
% of genes near scaffold ends (potentially truncated) 94.23 %
% of genes from short scaffolds (< 2000 bps) 94.23 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (98.077 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.269 % of family members)
Environment Ontology (ENVO) Unclassified
(28.846 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1Ga0005474J37262_1003031
2Ga0005496J37278_1000851
3Ga0005456J37224_1018421
4Ga0006867J43190_1003261
5Ga0058897_100630592
6Ga0058863_119446791
7Ga0058861_120655421
8Ga0081245_10704801
9Ga0079219_106764581
10Ga0075016_10894181
11Ga0075022_10185191
12Ga0075022_10219621
13Ga0075022_10248961
14Ga0075022_17171021
15Ga0115596_11190801
16Ga0127453_10769471
17Ga0127500_10155571
18Ga0127503_101549311
19Ga0126349_10196941
20Ga0126349_10773991
21Ga0126348_11635191
22Ga0126348_11821401
23Ga0126344_11305541
24Ga0126344_11551511
25Ga0138589_1004401
26Ga0138558_1042991
27Ga0138600_1693341
28Ga0150983_109942921
29Ga0151652_127612341
30Ga0134030_11324631
31Ga0134057_12326211
32Ga0134055_13529011
33Ga0134059_11647611
34Ga0134060_12880571
35Ga0154013_1007601
36Ga0157376_107866481
37Ga0184597_1184471
38Ga0184589_1086301
39Ga0184593_1096981
40Ga0184590_1100451
41Ga0184590_1318351
42Ga0184588_1095101
43Ga0184584_1074861
44Ga0180114_11491951
45Ga0180114_12940661
46Ga0184645_11432551
47Ga0187791_11119681
48Ga0187791_12231461
49Ga0187791_14857201
50Ga0180117_10438301
51Ga0187795_11602291
52Ga0180115_10834121
53Ga0187792_13293231
54Ga0206349_11480541
55Ga0206355_14973791
56Ga0206352_113619601
57Ga0210399_104297971
58Ga0154015_11263491
59Ga0179584_13449981
60Ga0179583_10910611
61Ga0179958_10438251
62Ga0213854_12748381
63Ga0213849_10359481
64Ga0213852_11621891
65Ga0213852_13559771
66Ga0213851_13395251
67Ga0213853_114558692
68Ga0213846_11229551
69Ga0213845_10124041
70Ga0213847_11978351
71Ga0224712_105184231
72Ga0242650_10161201
73Ga0242647_10321271
74Ga0242651_10339711
75Ga0242664_11424381
76Ga0242668_10948121
77Ga0242668_11008961
78Ga0242660_11834051
79Ga0242655_102313231
80Ga0222756_10460381
81Ga0242672_10861691
82Ga0242672_10865851
83Ga0247537_1022901
84Ga0247546_1021961
85Ga0213908_1404481
86Ga0268264_100134711
87Ga0210277_108272511
88Ga0210255_105536711
89Ga0265391_101841471
90Ga0307482_12077831
91Ga0265762_11548891
92Ga0265763_10338671
93Ga0075396_10438581
94Ga0075389_113416082
95Ga0265777_1159291
96Ga0138296_12130641
97Ga0138296_18886101
98Ga0308155_10239391
99Ga0265744_1122911
100Ga0265749_1020331
101Ga0308188_10261311
102Ga0170820_154066171
103Ga0307480_10193341
104Ga0307480_10220591
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 43.59%    Coil/Unstructured: 56.41%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
98.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Wetland
Groundwater Sediment
Watersheds
Wetland
Soil
Soil
Vadose Zone Soil
Grasslands Soil
Peatlands Soil
Enriched Soil Aggregate
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Forest Soil
Hardwood Forest Soil
Peatland
Forest Soil
Host-Associated
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Boreal Forest Soil
Tropical Rainforest Soil
4.8%13.5%15.4%2.9%6.7%3.8%5.8%18.3%2.9%4.8%4.8%5.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0005474J37262_10030313300002659Forest SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEP
Ga0005496J37278_10008513300002661Forest SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEPL
Ga0005456J37224_10184213300002662Forest SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFE
Ga0006867J43190_10032613300002874Peatlands SoilLQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSLSFE
Ga0058897_1006305923300004139Forest SoilLQVARSSFAPRRAATILLITLRFGSSFQIRYFLPGSLSFEP
Ga0058863_1194467913300004799Host-AssociatedLQVARSSFTPRSAATILFITQRHGSSFQIRYFLPGSLSFE
Ga0058861_1206554213300004800Host-AssociatedLQVARSSFAPRDAATILFVTQRRGSSFQIRYFLPGSLSFE
Ga0081245_107048013300006938Tropical Rainforest SoilLQVARSSFAPRCAETISYLLRIGSSFRIRYFLPGSLSFE
Ga0079219_1067645813300006954Agricultural SoilLQVARSSFAPRNAATILVIAQRYRSSVQIRYFLPGSLSFEPLGTTAIM
Ga0075016_108941813300007327WatershedsLQVARSSFTPRRAAIILFITQRFGSSFQIRYFLPGSLS
Ga0075022_101851913300007526WatershedsLQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLSF
Ga0075022_102196213300007526WatershedsLQVARSSFTPRRAANNFLFNARFGSSFQIRYFLPGSL
Ga0075022_102489613300007526WatershedsLQVARSSFAPRSAATVLIITQRYGSSFQIRYFLPGSL
Ga0075022_171710213300007526WatershedsLQVARSSFTPRSAATILVITQRYGSSFQIRYFLPGSL
Ga0115596_111908013300009580WetlandLQVARSSFAPRSAATILFIAQRFGSSFQIRYFLPGSLSLK
Ga0127453_107694713300010102Grasslands SoilLQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSL
Ga0127500_101555713300010103Grasslands SoilLQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSLS
Ga0127503_1015493113300010154SoilLQVTRSSFTPRSAATILVITQRYGSSFQIRYFLPGSL
Ga0126349_101969413300010861Boreal Forest SoilLQVARSSFAPRSAATILVITQRYGSSFQIRYFLPGSLSFEP
Ga0126349_107739913300010861Boreal Forest SoilLQVARSSFAPRSAATILVITQRFGSSFQIRYFLPGSLSF
Ga0126348_116351913300010862Boreal Forest SoilLQVARSSFAPRSAATILVITQRYGSSFQIRYFLPGSLS
Ga0126348_118214013300010862Boreal Forest SoilLQVARSSFAPRSAATILIITQRYGSSFQIRYFLPGSLS
Ga0126344_113055413300010866Boreal Forest SoilLQVARSSFAPRSAATILFVALHYGSSVQIRYFLPGSLSFED
Ga0126344_115515113300010866Boreal Forest SoilLQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSL
Ga0138589_10044013300011016Peatlands SoilLQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSL
Ga0138558_10429913300011017Peatlands SoilLQVARSSFAPRSAVTILVITQRYGSSFQIRYFLPGSLSFED
Ga0138600_16933413300011046Peatlands SoilLQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSLSFEDV
Ga0150983_1099429213300011120Forest SoilLQVARSSFTPRSAATILFITQRHGSSFQIRYFLPGSLS
Ga0151652_1276123413300011340WetlandLQVARFSFAPRSAATILFITQRFGSSFQIRYFLPGSL
Ga0134030_113246313300012387Grasslands SoilLQVARSSFAPRSAATVLWIAQRFGSSFQIRYFLPGSLSF
Ga0134057_123262113300012396Grasslands SoilLQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSLSFEDV
Ga0134055_135290113300012401Grasslands SoilLQVARSSFTPRSAATILVITQRHGSSFQIRYFLPGSL
Ga0134059_116476113300012402Grasslands SoilLQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSLSF
Ga0134060_128805713300012410Grasslands SoilLQVARFSFAPRSAATILLITQRYGSSFQIRYFLPGSL
Ga0154013_10076013300013064Corn, Switchgrass And Miscanthus RhizosphereLQVARSSFAPRCAATVLFIAQRFGSSFQIRYFLPGSL
Ga0157376_1078664813300014969Miscanthus RhizosphereLQVARSSFAPRSAATILFITLRFGSSFQIRYFLPGSLSFEPLGTTAIMGLIAS
Ga0184597_11844713300019162SoilLQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLS
Ga0184589_10863013300019165SoilLQVARSSFAPRSAATVLFITQRFGSSFQIRYFLPGSLS
Ga0184593_10969813300019179SoilLQVARSSFAPRRAATILFITQRFGSSVQIRYFLPGSL
Ga0184590_11004513300019184SoilLQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSLE
Ga0184590_13183513300019184SoilLQVARSSFAPRSAATVLFITQRFGSSFQIRYFLPGSLSF
Ga0184588_10951013300019186SoilLQVARSSFAPRSAATVLFITQRFGSSFQIRYFLPGSLSFK
Ga0184584_10748613300019187SoilLQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSFE
Ga0180114_114919513300019232Groundwater SedimentLQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLSFEP
Ga0180114_129406613300019232Groundwater SedimentLQVARSSFAPRNAAKILIIAQRCGSSFQIRYFLPGSLS
Ga0184645_114325513300019233Groundwater SedimentLQVARSSFAPRNAATGLIIALRYGSSFQIRYFLPGSLSF
Ga0187791_111196813300019245PeatlandLQVARSSFAPRRAAIILFITLRFGSSFQIRYFLPGSLF
Ga0187791_122314613300019245PeatlandLQVARSSFAPRGAATILFITQRFGSSFQIRYFLPGSLSFEP
Ga0187791_148572013300019245PeatlandLQVARSSFAPRSAATILFIAQRFGSSFQIRYFLPGSLSF
Ga0180117_104383013300019248Groundwater SedimentLQVARSSFAPRSAATILIITQRYGSSFQIRYFLPGSL
Ga0187795_116022913300019251PeatlandLQVARSSFAPRSAATILFIAQRFGSSFQIRYFLPGSL
Ga0180115_108341213300019257Groundwater SedimentLQVARSSFAPRSAATILIITQRYGSSFQIRYFLPGSLSF
Ga0187792_132932313300019265PeatlandLQVARSSFAPRRAAIILLITQRFGSSFQIRYFLPGSLSFEP
Ga0206349_114805413300020075Corn, Switchgrass And Miscanthus RhizosphereLQVARSSFAPRSAATILFITLRFGSSFQIRYFLPGSLSF
Ga0206355_149737913300020076Corn, Switchgrass And Miscanthus RhizosphereARSSFAPRSAAIILLITQRFGSSVQIRYFLPGSAELLG
Ga0206352_1136196013300020078Corn, Switchgrass And Miscanthus RhizosphereLQVARSSFAPRSAATILFITLRFGSSFQIRYFLPGSLS
Ga0210399_1042979713300020581SoilPRSAATVLFITQRYGSSFQIRYFLPGSLSFKPLGTRIIMLPKQLCRQ
Ga0154015_112634913300020610Corn, Switchgrass And Miscanthus RhizosphereLQVARSSFAPRRAAIVLFITQRVGSSFQIRYFLPGSLSFEP
Ga0179584_134499813300021151Vadose Zone SoilLQVARFSFTPRSAATILVITRRYGSSFQIRYFLPGSLSF
Ga0179583_109106113300021286Vadose Zone SoilLQVARFSFTPRSAATILVITRRYGSSFQIRYFLPGSLS
Ga0179958_104382513300021315Vadose Zone SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLS
Ga0213854_127483813300021855WatershedsLQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSLSFK
Ga0213849_103594813300021857WatershedsLQVARSSFTPRSAATILVITQRCGSSFQIRYFLPGSLS
Ga0213852_116218913300021858WatershedsLQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSLS
Ga0213852_135597713300021858WatershedsLQVARSSFAPRRAAIILFIAQRFGSSFQIRYFLPGSLSF
Ga0213851_133952513300021860WatershedsLQVARSSFAPRSAATILLITQRFGSSFQIRYFLPGSLSFK
Ga0213853_1145586923300021861WatershedsLQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSLSF
Ga0213846_112295513300021909WatershedsLQVARSSFTPRSAATILFITQRFGSSFQIRYFLPGSLS
Ga0213845_101240413300021929WatershedsLQVARSSFAPRSAATVLFVTQRYGSSFQIRYFLPGSL
Ga0213847_119783513300021938WatershedsLQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLSFE
Ga0224712_1051842313300022467Corn, Switchgrass And Miscanthus RhizosphereLQVARSSFAPRRAAIVLFITQRFGSSFQIRYFLPGSL
Ga0242650_101612013300022503SoilLQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSFE
Ga0242647_103212713300022505SoilLQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSF
Ga0242651_103397113300022511SoilLQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLS
Ga0242664_114243813300022527SoilLQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSFK
Ga0242668_109481213300022529SoilLQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSFEP
Ga0242668_110089613300022529SoilLQVARSSFAPRRAATILFVTQRFGSSFQIRYFLPGSLS
Ga0242660_118340513300022531SoilMQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSL
Ga0242655_1023132313300022532SoilLQVARSSFAPRSAATILLITQRFGSSFQIRYFLPGSL
Ga0222756_104603813300022709SoilLQVARSSFAPRSAATILFVTQRFGSSFQIRYFLPGSL
Ga0242672_108616913300022720SoilLQVARSSFTSRRAATILFVTQRFGSSLQIRYFLPGSLFLK
Ga0242672_108658513300022720SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFK
Ga0247537_10229013300023533SoilLQVARSSFAPRSAATILFITQRCGSSFQIRYFLPGSL
Ga0247546_10219613300023551SoilLQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSL
Ga0213908_14044813300026392Enriched Soil AggregateLQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSL
Ga0268264_1001347113300028381Switchgrass RhizosphereKLALQVARSSFAPRSAAKTFNDHSRYGSSFQIRYFLPGSLSFEPLGTTVIMLPEAVLRQ
Ga0210277_1082725113300030528SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPG
Ga0210255_1055367113300030589SoilLQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSL
Ga0265391_1018414713300030622SoilLQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSF
Ga0307482_120778313300030730Hardwood Forest SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFKP
Ga0265762_115488913300030760SoilLQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSL
Ga0265763_103386713300030763SoilLQVARSSFAPRSAATILFVTQRFGSSFQIRYFLPGSLSF
Ga0075396_104385813300030776SoilLQVARSSFAPRRAAIVLFITQRFGSSFQIRYFLPGSLSFEPLG
Ga0075389_1134160823300030852SoilLQVARSSFAPRRAAIVLFITQRFGSSFQIRYFLPGSLSFE
Ga0265777_11592913300030877SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSF
Ga0138296_121306413300030923SoilLQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEPLG
Ga0138296_188861013300030923SoilLQVARSSFAPRSAATILFVTQRFGSSFQIRYFLPGSLSFEP
Ga0308155_102393913300030987SoilLQVARSSFAPRNAATGLIIALRYGSSFQIRYFLPGSL
Ga0265744_11229113300031017SoilLQVARSSFAPRSAVTILLITQRYGSSFQIRYFLPGSLSFK
Ga0265749_10203313300031042SoilLQVARSSFAPRSAATILVITQRFGSSVQIRYFLPGSLSF
Ga0308188_102613113300031097SoilLQVARSSFTPRRAATILFITLRFGSPFQIRYFLPGS
Ga0170820_1540661713300031446Forest SoilLQVARSSFTPRSAATILLITSRFGSSLQIRYFLPGSLSFE
Ga0307480_101933413300031677Hardwood Forest SoilLQVARSSFAPRDAATILFVTQRRGSSFQIRYFLPGSLS
Ga0307480_102205913300031677Hardwood Forest SoilLQVARSSFAPRNAATILFVTQRHGSSFQIRYFLPGSLS


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.