Basic Information | |
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Family ID | F096734 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 39 residues |
Representative Sequence | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSF |
Number of Associated Samples | 89 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 8.16 % |
% of genes near scaffold ends (potentially truncated) | 94.23 % |
% of genes from short scaffolds (< 2000 bps) | 94.23 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (98.077 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.269 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.846 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 43.59% Coil/Unstructured: 56.41% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Wetland Groundwater Sediment Watersheds Wetland Soil Soil Vadose Zone Soil Grasslands Soil Peatlands Soil Enriched Soil Aggregate Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Forest Soil Hardwood Forest Soil Peatland Forest Soil Host-Associated Switchgrass Rhizosphere Miscanthus Rhizosphere Boreal Forest Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0005474J37262_1003031 | 3300002659 | Forest Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEP |
Ga0005496J37278_1000851 | 3300002661 | Forest Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEPL |
Ga0005456J37224_1018421 | 3300002662 | Forest Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFE |
Ga0006867J43190_1003261 | 3300002874 | Peatlands Soil | LQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSLSFE |
Ga0058897_100630592 | 3300004139 | Forest Soil | LQVARSSFAPRRAATILLITLRFGSSFQIRYFLPGSLSFEP |
Ga0058863_119446791 | 3300004799 | Host-Associated | LQVARSSFTPRSAATILFITQRHGSSFQIRYFLPGSLSFE |
Ga0058861_120655421 | 3300004800 | Host-Associated | LQVARSSFAPRDAATILFVTQRRGSSFQIRYFLPGSLSFE |
Ga0081245_10704801 | 3300006938 | Tropical Rainforest Soil | LQVARSSFAPRCAETISYLLRIGSSFRIRYFLPGSLSFE |
Ga0079219_106764581 | 3300006954 | Agricultural Soil | LQVARSSFAPRNAATILVIAQRYRSSVQIRYFLPGSLSFEPLGTTAIM |
Ga0075016_10894181 | 3300007327 | Watersheds | LQVARSSFTPRRAAIILFITQRFGSSFQIRYFLPGSLS |
Ga0075022_10185191 | 3300007526 | Watersheds | LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLSF |
Ga0075022_10219621 | 3300007526 | Watersheds | LQVARSSFTPRRAANNFLFNARFGSSFQIRYFLPGSL |
Ga0075022_10248961 | 3300007526 | Watersheds | LQVARSSFAPRSAATVLIITQRYGSSFQIRYFLPGSL |
Ga0075022_17171021 | 3300007526 | Watersheds | LQVARSSFTPRSAATILVITQRYGSSFQIRYFLPGSL |
Ga0115596_11190801 | 3300009580 | Wetland | LQVARSSFAPRSAATILFIAQRFGSSFQIRYFLPGSLSLK |
Ga0127453_10769471 | 3300010102 | Grasslands Soil | LQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSL |
Ga0127500_10155571 | 3300010103 | Grasslands Soil | LQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSLS |
Ga0127503_101549311 | 3300010154 | Soil | LQVTRSSFTPRSAATILVITQRYGSSFQIRYFLPGSL |
Ga0126349_10196941 | 3300010861 | Boreal Forest Soil | LQVARSSFAPRSAATILVITQRYGSSFQIRYFLPGSLSFEP |
Ga0126349_10773991 | 3300010861 | Boreal Forest Soil | LQVARSSFAPRSAATILVITQRFGSSFQIRYFLPGSLSF |
Ga0126348_11635191 | 3300010862 | Boreal Forest Soil | LQVARSSFAPRSAATILVITQRYGSSFQIRYFLPGSLS |
Ga0126348_11821401 | 3300010862 | Boreal Forest Soil | LQVARSSFAPRSAATILIITQRYGSSFQIRYFLPGSLS |
Ga0126344_11305541 | 3300010866 | Boreal Forest Soil | LQVARSSFAPRSAATILFVALHYGSSVQIRYFLPGSLSFED |
Ga0126344_11551511 | 3300010866 | Boreal Forest Soil | LQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSL |
Ga0138589_1004401 | 3300011016 | Peatlands Soil | LQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSL |
Ga0138558_1042991 | 3300011017 | Peatlands Soil | LQVARSSFAPRSAVTILVITQRYGSSFQIRYFLPGSLSFED |
Ga0138600_1693341 | 3300011046 | Peatlands Soil | LQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSLSFEDV |
Ga0150983_109942921 | 3300011120 | Forest Soil | LQVARSSFTPRSAATILFITQRHGSSFQIRYFLPGSLS |
Ga0151652_127612341 | 3300011340 | Wetland | LQVARFSFAPRSAATILFITQRFGSSFQIRYFLPGSL |
Ga0134030_11324631 | 3300012387 | Grasslands Soil | LQVARSSFAPRSAATVLWIAQRFGSSFQIRYFLPGSLSF |
Ga0134057_12326211 | 3300012396 | Grasslands Soil | LQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSLSFEDV |
Ga0134055_13529011 | 3300012401 | Grasslands Soil | LQVARSSFTPRSAATILVITQRHGSSFQIRYFLPGSL |
Ga0134059_11647611 | 3300012402 | Grasslands Soil | LQVARSSFTPRSAATVLFITQRFGSSLQIRYFLPGSLSF |
Ga0134060_12880571 | 3300012410 | Grasslands Soil | LQVARFSFAPRSAATILLITQRYGSSFQIRYFLPGSL |
Ga0154013_1007601 | 3300013064 | Corn, Switchgrass And Miscanthus Rhizosphere | LQVARSSFAPRCAATVLFIAQRFGSSFQIRYFLPGSL |
Ga0157376_107866481 | 3300014969 | Miscanthus Rhizosphere | LQVARSSFAPRSAATILFITLRFGSSFQIRYFLPGSLSFEPLGTTAIMGLIAS |
Ga0184597_1184471 | 3300019162 | Soil | LQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLS |
Ga0184589_1086301 | 3300019165 | Soil | LQVARSSFAPRSAATVLFITQRFGSSFQIRYFLPGSLS |
Ga0184593_1096981 | 3300019179 | Soil | LQVARSSFAPRRAATILFITQRFGSSVQIRYFLPGSL |
Ga0184590_1100451 | 3300019184 | Soil | LQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSLE |
Ga0184590_1318351 | 3300019184 | Soil | LQVARSSFAPRSAATVLFITQRFGSSFQIRYFLPGSLSF |
Ga0184588_1095101 | 3300019186 | Soil | LQVARSSFAPRSAATVLFITQRFGSSFQIRYFLPGSLSFK |
Ga0184584_1074861 | 3300019187 | Soil | LQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSFE |
Ga0180114_11491951 | 3300019232 | Groundwater Sediment | LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLSFEP |
Ga0180114_12940661 | 3300019232 | Groundwater Sediment | LQVARSSFAPRNAAKILIIAQRCGSSFQIRYFLPGSLS |
Ga0184645_11432551 | 3300019233 | Groundwater Sediment | LQVARSSFAPRNAATGLIIALRYGSSFQIRYFLPGSLSF |
Ga0187791_11119681 | 3300019245 | Peatland | LQVARSSFAPRRAAIILFITLRFGSSFQIRYFLPGSLF |
Ga0187791_12231461 | 3300019245 | Peatland | LQVARSSFAPRGAATILFITQRFGSSFQIRYFLPGSLSFEP |
Ga0187791_14857201 | 3300019245 | Peatland | LQVARSSFAPRSAATILFIAQRFGSSFQIRYFLPGSLSF |
Ga0180117_10438301 | 3300019248 | Groundwater Sediment | LQVARSSFAPRSAATILIITQRYGSSFQIRYFLPGSL |
Ga0187795_11602291 | 3300019251 | Peatland | LQVARSSFAPRSAATILFIAQRFGSSFQIRYFLPGSL |
Ga0180115_10834121 | 3300019257 | Groundwater Sediment | LQVARSSFAPRSAATILIITQRYGSSFQIRYFLPGSLSF |
Ga0187792_13293231 | 3300019265 | Peatland | LQVARSSFAPRRAAIILLITQRFGSSFQIRYFLPGSLSFEP |
Ga0206349_11480541 | 3300020075 | Corn, Switchgrass And Miscanthus Rhizosphere | LQVARSSFAPRSAATILFITLRFGSSFQIRYFLPGSLSF |
Ga0206355_14973791 | 3300020076 | Corn, Switchgrass And Miscanthus Rhizosphere | ARSSFAPRSAAIILLITQRFGSSVQIRYFLPGSAELLG |
Ga0206352_113619601 | 3300020078 | Corn, Switchgrass And Miscanthus Rhizosphere | LQVARSSFAPRSAATILFITLRFGSSFQIRYFLPGSLS |
Ga0210399_104297971 | 3300020581 | Soil | PRSAATVLFITQRYGSSFQIRYFLPGSLSFKPLGTRIIMLPKQLCRQ |
Ga0154015_11263491 | 3300020610 | Corn, Switchgrass And Miscanthus Rhizosphere | LQVARSSFAPRRAAIVLFITQRVGSSFQIRYFLPGSLSFEP |
Ga0179584_13449981 | 3300021151 | Vadose Zone Soil | LQVARFSFTPRSAATILVITRRYGSSFQIRYFLPGSLSF |
Ga0179583_10910611 | 3300021286 | Vadose Zone Soil | LQVARFSFTPRSAATILVITRRYGSSFQIRYFLPGSLS |
Ga0179958_10438251 | 3300021315 | Vadose Zone Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLS |
Ga0213854_12748381 | 3300021855 | Watersheds | LQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSLSFK |
Ga0213849_10359481 | 3300021857 | Watersheds | LQVARSSFTPRSAATILVITQRCGSSFQIRYFLPGSLS |
Ga0213852_11621891 | 3300021858 | Watersheds | LQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSLS |
Ga0213852_13559771 | 3300021858 | Watersheds | LQVARSSFAPRRAAIILFIAQRFGSSFQIRYFLPGSLSF |
Ga0213851_13395251 | 3300021860 | Watersheds | LQVARSSFAPRSAATILLITQRFGSSFQIRYFLPGSLSFK |
Ga0213853_114558692 | 3300021861 | Watersheds | LQVARFSFAPRCARIITYHQRIGSSFQIRYFLPGSLSF |
Ga0213846_11229551 | 3300021909 | Watersheds | LQVARSSFTPRSAATILFITQRFGSSFQIRYFLPGSLS |
Ga0213845_10124041 | 3300021929 | Watersheds | LQVARSSFAPRSAATVLFVTQRYGSSFQIRYFLPGSL |
Ga0213847_11978351 | 3300021938 | Watersheds | LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLSFE |
Ga0224712_105184231 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | LQVARSSFAPRRAAIVLFITQRFGSSFQIRYFLPGSL |
Ga0242650_10161201 | 3300022503 | Soil | LQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSFE |
Ga0242647_10321271 | 3300022505 | Soil | LQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSF |
Ga0242651_10339711 | 3300022511 | Soil | LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSLS |
Ga0242664_11424381 | 3300022527 | Soil | LQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSFK |
Ga0242668_10948121 | 3300022529 | Soil | LQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSLSFEP |
Ga0242668_11008961 | 3300022529 | Soil | LQVARSSFAPRRAATILFVTQRFGSSFQIRYFLPGSLS |
Ga0242660_11834051 | 3300022531 | Soil | MQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSL |
Ga0242655_102313231 | 3300022532 | Soil | LQVARSSFAPRSAATILLITQRFGSSFQIRYFLPGSL |
Ga0222756_10460381 | 3300022709 | Soil | LQVARSSFAPRSAATILFVTQRFGSSFQIRYFLPGSL |
Ga0242672_10861691 | 3300022720 | Soil | LQVARSSFTSRRAATILFVTQRFGSSLQIRYFLPGSLFLK |
Ga0242672_10865851 | 3300022720 | Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFK |
Ga0247537_1022901 | 3300023533 | Soil | LQVARSSFAPRSAATILFITQRCGSSFQIRYFLPGSL |
Ga0247546_1021961 | 3300023551 | Soil | LQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSL |
Ga0213908_1404481 | 3300026392 | Enriched Soil Aggregate | LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSL |
Ga0268264_100134711 | 3300028381 | Switchgrass Rhizosphere | KLALQVARSSFAPRSAAKTFNDHSRYGSSFQIRYFLPGSLSFEPLGTTVIMLPEAVLRQ |
Ga0210277_108272511 | 3300030528 | Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPG |
Ga0210255_105536711 | 3300030589 | Soil | LQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSL |
Ga0265391_101841471 | 3300030622 | Soil | LQVARSSFAPRRAATILFITQRFGSSFQIRYFLPGSLSF |
Ga0307482_12077831 | 3300030730 | Hardwood Forest Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFKP |
Ga0265762_11548891 | 3300030760 | Soil | LQVARSSFAPRSAATGLFITQRYGSSFQIRYFLPGSL |
Ga0265763_10338671 | 3300030763 | Soil | LQVARSSFAPRSAATILFVTQRFGSSFQIRYFLPGSLSF |
Ga0075396_10438581 | 3300030776 | Soil | LQVARSSFAPRRAAIVLFITQRFGSSFQIRYFLPGSLSFEPLG |
Ga0075389_113416082 | 3300030852 | Soil | LQVARSSFAPRRAAIVLFITQRFGSSFQIRYFLPGSLSFE |
Ga0265777_1159291 | 3300030877 | Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSF |
Ga0138296_12130641 | 3300030923 | Soil | LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEPLG |
Ga0138296_18886101 | 3300030923 | Soil | LQVARSSFAPRSAATILFVTQRFGSSFQIRYFLPGSLSFEP |
Ga0308155_10239391 | 3300030987 | Soil | LQVARSSFAPRNAATGLIIALRYGSSFQIRYFLPGSL |
Ga0265744_1122911 | 3300031017 | Soil | LQVARSSFAPRSAVTILLITQRYGSSFQIRYFLPGSLSFK |
Ga0265749_1020331 | 3300031042 | Soil | LQVARSSFAPRSAATILVITQRFGSSVQIRYFLPGSLSF |
Ga0308188_10261311 | 3300031097 | Soil | LQVARSSFTPRRAATILFITLRFGSPFQIRYFLPGS |
Ga0170820_154066171 | 3300031446 | Forest Soil | LQVARSSFTPRSAATILLITSRFGSSLQIRYFLPGSLSFE |
Ga0307480_10193341 | 3300031677 | Hardwood Forest Soil | LQVARSSFAPRDAATILFVTQRRGSSFQIRYFLPGSLS |
Ga0307480_10220591 | 3300031677 | Hardwood Forest Soil | LQVARSSFAPRNAATILFVTQRHGSSFQIRYFLPGSLS |
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