NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011016

3300011016: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 81 (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300011016 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053071 | Gp0061234 | Ga0138589
Sample NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 81 (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6979162
Sequencing Scaffolds43
Novel Protein Genes45
Associated Families43

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available34
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomepeatlandpeat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000396Metagenome / Metatranscriptome1185Y
F001346Metagenome / Metatranscriptome718Y
F001380Metagenome / Metatranscriptome709Y
F001719Metagenome / Metatranscriptome647Y
F001953Metagenome / Metatranscriptome612Y
F003497Metagenome / Metatranscriptome483Y
F004178Metagenome / Metatranscriptome449Y
F004372Metagenome / Metatranscriptome441Y
F004452Metagenome / Metatranscriptome437Y
F005001Metagenome / Metatranscriptome415Y
F007465Metagenome / Metatranscriptome350Y
F007739Metagenome / Metatranscriptome345Y
F011066Metagenome / Metatranscriptome295Y
F011395Metagenome / Metatranscriptome291Y
F011567Metagenome / Metatranscriptome289Y
F012750Metagenome / Metatranscriptome277Y
F017080Metagenome / Metatranscriptome242N
F021724Metagenome / Metatranscriptome217Y
F026908Metagenome / Metatranscriptome196Y
F035646Metagenome / Metatranscriptome171Y
F036359Metagenome / Metatranscriptome170Y
F036577Metagenome / Metatranscriptome169Y
F037099Metagenome / Metatranscriptome168Y
F037359Metagenome / Metatranscriptome168N
F037758Metagenome / Metatranscriptome167Y
F038548Metagenome / Metatranscriptome165N
F044936Metagenome / Metatranscriptome153N
F049346Metagenome / Metatranscriptome146Y
F049452Metagenome / Metatranscriptome146N
F054250Metagenome / Metatranscriptome140Y
F055497Metagenome / Metatranscriptome138Y
F056377Metagenome / Metatranscriptome137N
F064456Metagenome / Metatranscriptome128Y
F065459Metagenome / Metatranscriptome127Y
F065469Metagenome / Metatranscriptome127Y
F065493Metagenome / Metatranscriptome127Y
F067292Metagenome / Metatranscriptome125N
F068028Metagenome / Metatranscriptome125N
F074507Metagenome / Metatranscriptome119Y
F090001Metagenome / Metatranscriptome108Y
F091140Metagenome / Metatranscriptome107Y
F091395Metagenome / Metatranscriptome107Y
F096734Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138589_100040Not Available820Open in IMG/M
Ga0138589_100218Not Available537Open in IMG/M
Ga0138589_100440Not Available562Open in IMG/M
Ga0138589_101254Not Available564Open in IMG/M
Ga0138589_101486Not Available575Open in IMG/M
Ga0138589_101804Not Available580Open in IMG/M
Ga0138589_102343Not Available586Open in IMG/M
Ga0138589_103062Not Available692Open in IMG/M
Ga0138589_103757Not Available759Open in IMG/M
Ga0138589_104011Not Available519Open in IMG/M
Ga0138589_104201All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera575Open in IMG/M
Ga0138589_104554All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium538Open in IMG/M
Ga0138589_104556Not Available544Open in IMG/M
Ga0138589_105259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi616Open in IMG/M
Ga0138589_105661Not Available534Open in IMG/M
Ga0138589_105909Not Available569Open in IMG/M
Ga0138589_105932Not Available553Open in IMG/M
Ga0138589_106789Not Available500Open in IMG/M
Ga0138589_107645Not Available822Open in IMG/M
Ga0138589_107654Not Available565Open in IMG/M
Ga0138589_107833Not Available738Open in IMG/M
Ga0138589_107933All Organisms → cellular organisms → Bacteria → PVC group940Open in IMG/M
Ga0138589_108469All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium508Open in IMG/M
Ga0138589_108507Not Available540Open in IMG/M
Ga0138589_108527Not Available564Open in IMG/M
Ga0138589_109253Not Available642Open in IMG/M
Ga0138589_109547All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia602Open in IMG/M
Ga0138589_109885Not Available537Open in IMG/M
Ga0138589_110263Not Available517Open in IMG/M
Ga0138589_111051Not Available559Open in IMG/M
Ga0138589_111511Not Available582Open in IMG/M
Ga0138589_111963Not Available567Open in IMG/M
Ga0138589_112285All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium522Open in IMG/M
Ga0138589_112458All Organisms → cellular organisms → Bacteria642Open in IMG/M
Ga0138589_113109Not Available511Open in IMG/M
Ga0138589_113183Not Available1620Open in IMG/M
Ga0138589_113593Not Available579Open in IMG/M
Ga0138589_114327Not Available560Open in IMG/M
Ga0138589_114753Not Available704Open in IMG/M
Ga0138589_115135Not Available582Open in IMG/M
Ga0138589_115725Not Available589Open in IMG/M
Ga0138589_115870Not Available728Open in IMG/M
Ga0138589_115873All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138589_100040Ga0138589_1000401F004372MILTDSATSHRMPGQVLSRDGDRFAAWLADLTWAKLFPEGRDLYYDGECPDKFTEAIREEFGFDPSADPLWGKWVEGDHGEPGFISYGFHCPAKHIDAIYAMHGSHRFPGRVLILCR*
Ga0138589_100218Ga0138589_1002181F005001MHGIELREQERRTIRLSAPRWPFSPAAGSMLPGSPLAASCPEPVARNGFSLARNSCRLSATSIPGSKLPACYFASFQVGFRARSALRLHYRIPDCAGCGGFTACGPLHCHRSVRPAAPAISTPLRDFYLPRDQSVQPRLLPAGPPDESARFPFAPRRPSWLKFGMRII
Ga0138589_100230Ga0138589_1002301F049452RFPASPTTGMHGTELRVQERRTFRLSAPPKPFSPAPGSMLRNFAAAFYLLSSTEPGARNGLSLAYNGCRLSAASIPGSTFLACYFAPCLKPSLPVRPFCSITFAGSPRSMAISMRLARCSSASRLDRPLPLPPLPFRTLTSLRIKVFSRLRCPSTRLPSTPDFLSLPDAGSISRVGFGSPFLVRYVSGD*
Ga0138589_100440Ga0138589_1004401F096734LQVARSSFAPRSAAIILFITQRFGSSFQIRYFLPGSL
Ga0138589_101254Ga0138589_1012541F038548WLTTGMHRTEHCVRERRVLRCSAPLKPVSPAPGSTPCSAPQPSTSSPKRDRPLVTAFRSPVTAAPLSASIPGSKLLACYFTPAPTGFLARSAFPLHHRPRFAPVAAGFFASGPLRLRLLAPPAGSATSTPLSGSYTRPDRSVQLFLPPFGPPSEPARFPLAPRRSLSFKVRAADQRSRFATFPEACCS
Ga0138589_101486Ga0138589_1014861F044936RTVSLAGSSGSGAVIRRAVIRDYFNAAGSRRKIGLLAKASFSGWNRVERYEPEGSRGPEGEWKPEDNGRVHESDLATGLAC*
Ga0138589_101804Ga0138589_1018041F074507MELVKARAVVGERKAVTSGGPVPKRSKGCGAQRGIDPGPGENRQWGVRLRCARCFGMQCSVPGMPAVNKAGNQ
Ga0138589_102343Ga0138589_1023431F091395MHGTEHRIPKRRTPRSSTPQNPFSPGPGSMPCRAPQPFLFFRTGPPLVTTFRSPTTAPAFRGFHSRINVPGLLLHVLACRFRCPFGLPAPPPALVCPRTGRFYAEKPVAASATGSPNCSTSLRSPLGLLRPSGSKRSADLAARWPAFRTRPISVRSPPPAAILLDLGCGSPFPVRYVSGGSLF
Ga0138589_103062Ga0138589_1030621F036577MIGKPLMLSPFSIRRFGAARVDTIPLLNRTLHRPDVRRMSLPMSLEYSLPQLAPQAIFPN
Ga0138589_103757Ga0138589_1037571F026908LIWFAGRWRNHQPKRAEKPHSKFSGRKALDGPATRPKTPFAVENGVGKPAAPREGARLMPVREREP
Ga0138589_104011Ga0138589_1040111F065493CNQERRTFRLSAPLELGFPRLRINASWLAAAIFSRLGPATRNGLSLACNGACFHKPHSRVKGPDLLLRCLAASFTARSALLLHHRIPVRPGLGRFFASGPLHFCLLLRLAASPISTPLRGFCSPPDQSVRPGLLPVGPPSESARFPVAPRYRSFFKCGCGSPFQVRYVSGGL
Ga0138589_104201Ga0138589_1042012F007465MIASFWTQWLEQSSRGTQALLEAMQGAGDPQELHRRWLDAVSRSLDDFMRTPTFLQLVGNNLKAVTDMKGMQDQVIQDTARHFGLPLAADITGLFERLHSTEQNIINRLQAIEERLKAI
Ga0138589_104554Ga0138589_1045541F068028MHQNGMLWRIRLTLSDDQHSRALFHEALANKPVSVVRLEPCGAGKAEITGEVMVEFTPDDGLAVLLEALHMISPQVFVARADRPASPASPEVLARR*
Ga0138589_104556Ga0138589_1045561F011395MVAWKRAVVSGERKAVARCGFQPERTQAIFKALIRRPQKGWRGAKEIPPVIRLQSSEPCMPASGQAELRI
Ga0138589_105259Ga0138589_1052591F036359LYSNGSNVRYRKLESYQRHDGVDITKVLKLGENAKLKHNAEDGVALVN
Ga0138589_105661Ga0138589_1056611F090001LTAGIHGIEHCNWKRRTLRLLAPQPPVSPTTGSIPQSAPQHSSIRGRSLVTAFPSPATALAFTSSIPGSKVPACYFASSLTASCDRSARIYPTGPGLPRSRLLHRSTPVAPSTTRAPDCAFRFRSPSGFLGPSGSKRSAKAAVRRPAFRFARSPFAPRSHFYF*
Ga0138589_105909Ga0138589_1059091F065469PDLAAKLPAGMQRHRALPPGSPSAIPSAPRRFLSKATAQCFQAHLPAFLAGTGISKRPFTLPKRLPVSRPPFRGQSSRPAPSTPCRSFVLPVRIPIPPRAPVRPGVRGIVTAIPLPDSRPALPTLPRISTPLRGLSDPLGSKRSTRFLAGKFTFQALPIARHSPTSILFY*
Ga0138589_105932Ga0138589_1059321F065459NGSEPGTLIRWQTLKRKAGGERREIGPGIQASFSTGEWAERFDLEGPKNPKGERRLNHRKKTLD*
Ga0138589_106789Ga0138589_1067891F007739AESKIDVVRFKMIPGDWGKVRSGWLIWLLLNRAARLGSGGRIHQFLWRCSHTVKCE*
Ga0138589_107645Ga0138589_1076451F001953MKKLGLLLLPILAITLMLGGNAFAQPAPGDGSYYFVTYYSNANTSGAPDGTLRIINDGDQATASPEGVENGTLWAAIYVFDDSQEMQTCCACVITSDGLLSESVNKELVNLNINITGRGEVQRGTIKVISSSNGNEFSPAPLTGLRGWMTHIQSTTNGIPTTPGGPDGSKGPWFVTETALADSNLSGTELANLGETCSFGRTLGSGYGFCLCTPEDQDF*
Ga0138589_107654Ga0138589_1076541F049346DFQPCPPSACTMRSSALRSPECPAVPLPSGRFLCPWIDASRHTAIALLNGAGCSYRPFSRLQRLPPLRGLHSKVNDPGLLLRFLPASFTARSAFGSPASTGLPQMVAASSLQARRGSTRRFARLLPLPPLPSRTLTSLGIEAFNRFRHLTAHLPNPPDFLSLPAAGSISSVGRGSPFLDRYVSGGLLF
Ga0138589_107833Ga0138589_1078331F055497LFKKESIITPTAENMSARVRLFNDQGQLVAEWMSSEGAYVDNPAAGHVTAANGVLPAKGGLDVVGTGAFPAYPFNNQGGSPFTSPSSNLNGYNYLPAGTKLLHVLLAGLPQQVPLGSDITGVYFGDPIATGFACDFELDCYSAPYAQYPFPYTGIAGAPDYTGGWTAEADFVPWYSANAGTQELASGGLQTTSAPGSYAQYYPPVNGLLMGESYHIIPGTTATSGISLTEDMALNSNFVGHTMAAN
Ga0138589_107933Ga0138589_1079331F064456SLSQCLDGFMRTPAFLEVLKQSLKRMIDLKQMQDQMSQSVAQQTGLPLAADVTGVFERVHSAEQTILKQLAKLDDRLKAIEKTLNSGPAEKNPKRKRATTKEDIGDDAPNDPAD*
Ga0138589_108469Ga0138589_1084691F011066MTNTENVQRYADAIMAMIKEDQDTGQLPRNVCSWDELDESVDAGDYYRLARMPSGTPEAIALRNAVNEEIGQRLARARG
Ga0138589_108507Ga0138589_1085071F003497PLPDRHARPKHGSQRIGDIALLLPVTAFIRLRNRAPELIRHFYLLEAFVSERPFARPQRLFSFENHRGEVKPPDLSLRQNSELFFQPVRPSAPALDGVHHASGDVRRTRPVAVSRAQNSQTSIQPSLPFRTFVPPDRSAQSAAGSEKLTLVPGPFFLRSPKASITF*
Ga0138589_108527Ga0138589_1085271F012750MEASERGQPLQARERPLRATGSVEKSDCGVPGGIDPGVEKSATGERNGGTLRASQCTAPHRACRWRARLEI
Ga0138589_109253Ga0138589_1092531F056377TYGYVQDQGFSVYADVAQIADVRLNLVIGVNITLDILFKKEHVITPTDFNMSGRVRIFNDQGQLVGEWMSSNGAYIPRTGSNAGPVTSNGYLGSEAVAADGTVKYPFGPLHAAVPGVPGSGAGGIGSASQQSPAVGSGLNTYNYIPGGITILHTTIAGLPQVPAAGYDAPPALPAGTYSGDPVFTPSGCDFELDCYAGGYMMGMGHGASTGAA
Ga0138589_109547Ga0138589_1095471F004178MRSKSSHAAESGVGEHTARESECAQCVRRERVRGEHP
Ga0138589_109885Ga0138589_1098852F037758MASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPKIPSVQVPGAEKLPKPLDVV
Ga0138589_110263Ga0138589_1102631F000396CTQDCRASSLRLPVAFFRTQRINASRLACQLSWLKPASRSGLSLSRNDCPFPGHHSEVEAPDLLLRRPAVHSPCPFGFRFPHAPRFAPARASSQPKSRCPTPVRHSRPFLGSPLPFGAFRTLKDQSVQPDSWPLSSPSERSRLPITPRRRFYFISADTRSPLQAR*
Ga0138589_111051Ga0138589_1110511F001380MLRINSSSLSAAAFRPATGHSNQRILIGLSILPEPESRCGLSLAHNDAFATIARSMFLACTFVSPSKTFAEPFDSRLFRSVRFRGRTGATSTPGTRFPLHSSTLRIFSRSPLPFRPSFENPSDQSVRPVPNPEARLTRRPIVSYSPPLPLAIPPRISA*
Ga0138589_111511Ga0138589_1115111F011567LRLVPVTGSTLLAYIFEAILKSTPQPVRLQAPVPVRPFDCLARYDQRLKPVVGIKLPDSPPVFEPPLPSRTFLSFGIEALSPTPFGNACLYESPDLPSLPASRKCLTIAARRINVPDPLLPVKLA
Ga0138589_111963Ga0138589_1119631F004452VCREALILGTRNRTRGSGTAGHTELLNAVLSTVHAGGEQGWKS
Ga0138589_112285Ga0138589_1122851F091140VALSLSEPLTASSDGGCYPPSRPEESGLSSMAHPSTQAAGPVSRHRSSSQGATAIIA
Ga0138589_112458Ga0138589_1124581F037099AVSRSLDDFMRTPTFLELLGNNLKAITDLKGLQDQVVQDTARQFGLPLAADITGLFERLHSTEQNILNRLQAIEDRLKAIETKH*
Ga0138589_113109Ga0138589_1131091F054250VLRALILILVPLTVFGFYVALQGDSQIRQMAGENIRSVTRTSAEFTSEFIAGRVRDVSVIANNPSLVQAVISANHQYERLSDDAVMSKLAATEQKWNNSEGDALAKNILASDLARQLRRQRYLDPGLLKITVADASGTTV
Ga0138589_113183Ga0138589_1131833F037359MGGILSFLGGAAMGSVDETIKASLARINAGLQSVGSPNVFEQYQHGVYLNQPFGRSEHAHQVAYALGEGQGYARVEQDKGPDQNDQFWVRLLKPNEITDDMLPIATGVIDQMRRLEHDVHQKPEPAEPQSEDRPTPTPTGEVVSTASLKVVELREKSAQLPGYAYAGGQQLNTIFEVGDGGDAKAVAIKGIRSQRDAMLELHSDGHVAIHVDAADALGGIRDYTRYLTTRDDRDLSQAGGPLVVEFTKEELANVASISTVDAGQFGRRTVITYNDNRSLNVMAGDVQIALKTGDDEITIPVSASGETLSTLRANHPE*
Ga0138589_113593Ga0138589_1135931F001719MKHIVGTTLRVGACAVLAITGLALLAGKDDIRRFRRMRNM*
Ga0138589_114327Ga0138589_1143271F049346SQPCPPPACTVRSNALRSAECPAVPLPQNRFLCLGIDASRHTAVSLLNGAGRSQRPFPRPQRLPPLNGLHSGVKGPGLLLRALPAGFLARSAFGSPASTGLPQLRAGSTPQARYVSTRQLARLLPLPPLPSGTFASLGIEAFNRFRRLAARLPNPPDFLSLPAAGSISRVGCGSPFLDRYVSGDLL
Ga0138589_114753Ga0138589_1147531F017080QPVLRPPATPEAGPQLSLATASSGCAGFEPPTCVGCPTSGSTGGQPSGSDRCSALRLDRWQAPGFRRLLCASDRPAADLPTCVGVLPPARPATNCRLTPGADSSARLVPNLRLSPAVVAAFSLRLLLLRLSSLRWLPPVCHTGGELPTRIGCYALRLYRSRFIRLASDASTSGWAFDAPLASTEPCIAGKPSMSIQSPPVLAPSGPASLTTSDLRRLLQSLARPAIPLRLSPQV
Ga0138589_115135Ga0138589_1151351F011567LRLDPVTGSTLLAYIFKAILKPTPQPVRLQTPVPVRPFYCRARYDPRLKPVAEAKLPDFLPVFEPPLPSRTFLSFGIKALNPTPFRSACLGESPDLPSLPVSRKCLTIAARRINVTDPILPVRLTV
Ga0138589_115725Ga0138589_1157251F001346VKTFREVSDVKNGVADLWTKGNLRVKRRDPWHRANALPRAVADLALSGEDAEKKTQTCLDLVRKPVA
Ga0138589_115870Ga0138589_1158702F067292VLRPPATPETGPQLSLATASSGCASFELPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQALGFHRLLCASVRPAADLPTCVGVLPPARPATNCRLTSGADPSARLVPNLRLSPVVVAAFSLRLLLLRLLQLALAVARLPYRQRTSDSHRLLRHPDSPVSTHSTCVECFYHRLGLWCTPCFNWTLHRRLSRR*
Ga0138589_115873Ga0138589_1158731F035646MAQDNQPDLQVEGWLKTLGIESLCQWDVLVFLYRHQPTLVRAEHIARLLGDATAEVVAALDSLESSGLVQPSRVSQGVRLYQLTAPADPARRDALGRLMTLADSHTVRLLLGRRLRGNDRPDQNKKAVRLRGAESSES*
Ga0138589_116606Ga0138589_1166061F021724GFFSALDKAGLNKDTIASGRGAIQFWGINDTWGGENYGIPSGTYTPNVGVNGYYSPTPLEQVSVTLSGNPTAISDHLFLAPGFNVSVYSIDWERPRVSRNWVWSGCQDAELPSNYGSTPGVAGSASPFTYNTPGCIGSEIDVGFYQVTNGTAGALADYFGPEPTFQPP

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