Sample 3300002662

Basic Information
IMG/M Taxon OID	3300002662 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056635 \| Ga0005456
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF105 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF105 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6940556
Sequencing Scaffolds	23
Novel Protein Genes	26
Associated Families	26

Dataset Contents

Total Genome Size

6940556

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae → Solanoideae → Solaneae → Solanum → Solanum tuberosum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae → Solanoideae → Solaneae → Solanum → Solanum tuberosum

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.180244	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.532967

Long. (^o)

-72.180244

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001343	Metagenome / Metatranscriptome	719	Y
F003497	Metagenome / Metatranscriptome	483	Y
F007311	Metagenome / Metatranscriptome	353	Y
F009043	Metagenome / Metatranscriptome	324	Y
F010404	Metagenome / Metatranscriptome	304	Y
F016972	Metagenome / Metatranscriptome	243	Y
F017080	Metagenome / Metatranscriptome	242	N
F018933	Metagenome / Metatranscriptome	232	N
F024561	Metagenome / Metatranscriptome	205	Y
F029356	Metagenome / Metatranscriptome	188	Y
F030305	Metagenome / Metatranscriptome	185	N
F038685	Metagenome / Metatranscriptome	165	Y
F047066	Metagenome / Metatranscriptome	150	Y
F052338	Metagenome / Metatranscriptome	142	Y
F055474	Metagenome / Metatranscriptome	138	Y
F058585	Metagenome / Metatranscriptome	134	N
F072941	Metagenome / Metatranscriptome	120	N
F078064	Metagenome / Metatranscriptome	116	N
F079670	Metagenome / Metatranscriptome	115	N
F080064	Metagenome / Metatranscriptome	115	Y
F088984	Metagenome / Metatranscriptome	109	Y
F096734	Metagenome / Metatranscriptome	104	N
F098814	Metagenome / Metatranscriptome	103	N
F098815	Metagenome / Metatranscriptome	103	N
F102643	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005456J37224_100065	Not Available	863	Open in IMG/M
Ga0005456J37224_100184	Not Available	817	Open in IMG/M
Ga0005456J37224_100490	Not Available	601	Open in IMG/M
Ga0005456J37224_100502	Not Available	547	Open in IMG/M
Ga0005456J37224_100582	Not Available	589	Open in IMG/M
Ga0005456J37224_100613	Not Available	887	Open in IMG/M
Ga0005456J37224_100798	Not Available	807	Open in IMG/M
Ga0005456J37224_100863	Not Available	515	Open in IMG/M
Ga0005456J37224_101052	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae → Solanoideae → Solaneae → Solanum → Solanum tuberosum	586	Open in IMG/M
Ga0005456J37224_101140	Not Available	898	Open in IMG/M
Ga0005456J37224_101842	Not Available	594	Open in IMG/M
Ga0005456J37224_101899	Not Available	699	Open in IMG/M
Ga0005456J37224_102234	Not Available	815	Open in IMG/M
Ga0005456J37224_102434	Not Available	628	Open in IMG/M
Ga0005456J37224_102701	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum	600	Open in IMG/M
Ga0005456J37224_102970	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1675	Open in IMG/M
Ga0005456J37224_103298	Not Available	607	Open in IMG/M
Ga0005456J37224_104039	Not Available	739	Open in IMG/M
Ga0005456J37224_104375	Not Available	527	Open in IMG/M
Ga0005456J37224_105604	Not Available	781	Open in IMG/M
Ga0005456J37224_105873	Not Available	775	Open in IMG/M
Ga0005456J37224_106847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
Ga0005456J37224_107348	Not Available	634	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005456J37224_100065	Ga0005456J37224_1000651	F058585	LWRFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGRCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFAPAASPSALTGREPLGLRLVAPSPAEPVMHSLFPPNLASPAKPSMSIPFPLALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRAGGHPPVLTGCPLRQPCWRSTSGLRRLSLLPAFRQPT
Ga0005456J37224_100184	Ga0005456J37224_1001842	F018933	HVPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPALYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT*
Ga0005456J37224_100469	Ga0005456J37224_1004691	F102643	MGGRSHPKLNILGRPIAKKYSDGKVKRTLKRRSKVLETVKRETDGASNYPMGIQTIHFCSISQWFDRSTECPVRLLLGCYKRYLVCMFVNIKYERGINHGGRWTGHVW*
Ga0005456J37224_100490	Ga0005456J37224_1004901	F010404	MQPFTLLQRRFALQQIPAAGSTLLAYIFKAALEFQLARSASRSRPRLAFFRLTELDHCESPVANFLS*
Ga0005456J37224_100502	Ga0005456J37224_1005021	F024561	VALGQRIAKSGGRPSANGQDADPKSQTCLDLVRKPASANASPSELKASLNFSDRKALDGPAMRPETPLAVENGVGKLAASARMRLMSAWEREHGELPA
Ga0005456J37224_100582	Ga0005456J37224_1005821	F000396	VPSDLISQPNSPPACNGTELCPQDRRVSSLQLPAAFFRTLRINAYGPTCQLSWLEPVSRSGLSLSRNDCPSPGHHFEVEAPDLLLQHPAVRSSCPFRFRFPYVLQFALVRARSRPKPRCLTPVRHSQPFFGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR*
Ga0005456J37224_100613	Ga0005456J37224_1006131	F079670	VKRTLKKGLKVLEMVKRERNKIITIDNSLKLRTILYFFF*
Ga0005456J37224_100798	Ga0005456J37224_1007981	F080064	METSSVDHGVICERCEQSLPEMEQSMTGRGSQAMSAERSAGKAGREVKGAEQSELEAEGQVSGTK*
Ga0005456J37224_100863	Ga0005456J37224_1008631	F055474	MPFGIKAFGQFSLPEVHLRKTPDFLSLPVARLHINDDDRGSTFQVRYVSRGSLFSVNL
Ga0005456J37224_100881	Ga0005456J37224_1008811	F098814	LPGTLPVDFPITGFAGIRINAFRRAAFLFRTGLSARNGLSLARYDLRLRGFRYEVNVPGLLLRLRILRFCHPFRLLLHCQSRFAPFSAASTLQTRCGVAVRFRRPRLQPLLPLRNITSLRIDASAVLAACQPACQGCPISVRSPQPFLLLGWLRIIVPGPLLPRKLAVPQT
Ga0005456J37224_101052	Ga0005456J37224_1010521	F009043	VPSDLISQPNPPPACTALSFATRVARCCPFRSPPPSFESNGSTRPGSPAGFPAWSRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRHAQDRYQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGHEAHLPNSFDCLSLPGPGSILLAPMPDHRSRLASRSAACCSTD
Ga0005456J37224_101140	Ga0005456J37224_1011401	F030305	RMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFRIACRAGLQSVSLQ
Ga0005456J37224_101842	Ga0005456J37224_1018421	F096734	LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFE
Ga0005456J37224_101899	Ga0005456J37224_1018991	F078064	IAGCTRDCKSRRKSKVVKLADSEDARTGGYGILIDGLPAMQGSVEVRGASKAQPEVEPQGASRVNRNR*
Ga0005456J37224_102098	Ga0005456J37224_1020981	F003497	VHLLLPAAAFIRLRIGAPDSRSLFSYLLEASASRRPFTRPQRLPSFESPRSEVNAPGLSLRRNSELFFQPVRPPTPILNCVLHAAGGVHCKPVAVFRSQNSQTSFLSLPFRTFIPSDRSARSEAESEKLTFAYSPISLRSPKAPITF**
Ga0005456J37224_102234	Ga0005456J37224_1022342	F017080	LDESVVQPVLRPLATPETSLQLALATPSSGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFRRLHCASVRPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNFRLSPAVVAAFSLRLLPLRLSSLRWLSPVCHTGGELPTRIGCYAIQLHRF*
Ga0005456J37224_102434	Ga0005456J37224_1024341	F072941	LEIVKSEAIESPIMINITVGEIQFISIRLLARVHFGCDEWMAFKGD*
Ga0005456J37224_102701	Ga0005456J37224_1027011	F098815	SK*PIEQLALPAGMRSQSLACSVVDTSPFAPRCGFYPASDRCSRARLPFLPARSHCLGTAFPLPFGSPATTVLFRKPPRRGQSSWPIPSASIPNLSSSPFGPELPPSAPFFTSPGAFLAQNPLPAGKPETLKRPSNFRSPSGLSSLRISALGQRLNLRSLPLCSTRFSFAPRWRQSLLITTRHRIIVPDSLPFTRLSAL
Ga0005456J37224_102970	Ga0005456J37224_1029701	F016972	MVRLTPLTDEIPVVNFYLTINEIYRVSFGAKTSRYGPHELGYRRAT*
Ga0005456J37224_103298	Ga0005456J37224_1032981	F038685	PEKPAENTTGIIPGDRGKDEESWFPPPLPAALKTAGQARSPAPLAGVMTGQLHH*
Ga0005456J37224_104039	Ga0005456J37224_1040392	F047066	VAPANAPQKTVADRSLTVKTRENHRRVFTWFASRWRNHQPKRAEKPHSIIRNRKNPDGPATRPITPLAVENGVGKPAASERSAPNVGAGKRVWRTPTP
Ga0005456J37224_104375	Ga0005456J37224_1043751	F007311	VPSCWPPHFAVAPIMDCSMLDAWHSLLHADCSALHFVCPVQTTDLTRCSTLSALRLLRIAPRSTPCARAGHGSLRATDCSVVQHLELCPACGLLRHRDLAFHAALGLLLVRRFPLSVAHGLLRARRLTLHAGLRIAPYADILRPRAVYGLLHFRH*VPHRHRLLCARRLTLCAVS
Ga0005456J37224_105604	Ga0005456J37224_1056041	F052338	HTFIRHTYNCVPRRLNYMANKKTGRKRPQNSVQPRRVGGFDKNDATLVHIVIGEPGISGVPSTIKGRCWIEWVPRLDATGADKRCFYSKVGVDEYDKILGESGNKLPRNGASLNPEGRKFLVLFPGTLKVWMETKKKDVGPTRAVVESIPASVNSQAVRDNVMLTMVGGGYAETIASRAPSRLDKPSGSGNSRRVS*
Ga0005456J37224_105873	Ga0005456J37224_1058732	F029356	MTTLILNPRGKDGGRPPARVAGRGEATTRKLDRLPGESPGTDVRKISAEAKAVRLLE
Ga0005456J37224_106847	Ga0005456J37224_1068472	F001343	MKFANTRFATVSKSLFMGLALLMATSAFAGTKASLELHYPTNVNGTKLKPGEYKLQWEGSGPNVELSIMSGKNVVAKVPAHLVDLSSPAGNTAAVVKHNDDGSADLQGVRFEGKKYSLELGDGGNGMAASK*
Ga0005456J37224_107348	Ga0005456J37224_1073481	F088984	VFDRFISISLWCAQVTVTPDARRTAVLSSGTLNGLRGLIPVGGQQHPSSGVGASLLWKNAQKNAKKNRTSDVINRIIPHRKPFVT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002662: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF105 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences