Sample 3300002661

Basic Information
IMG/M Taxon OID	3300002661 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056712 \| Ga0005496
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF145 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF145 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6577468
Sequencing Scaffolds	36
Novel Protein Genes	37
Associated Families	35

Dataset Contents

Total Genome Size

6577468

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	33
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus igniterrae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus igniterrae

All Organisms → cellular organisms → Bacteria → Acidobacteria

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.53312	Long. (^o)	-72.189707	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.53312

Long. (^o)

-72.189707

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003497	Metagenome / Metatranscriptome	483	Y
F006508	Metagenome / Metatranscriptome	371	Y
F006591	Metagenome / Metatranscriptome	369	Y
F011566	Metagenome / Metatranscriptome	289	Y
F014264	Metagenome / Metatranscriptome	264	Y
F015698	Metagenome / Metatranscriptome	252	Y
F015733	Metagenome / Metatranscriptome	252	Y
F017080	Metagenome / Metatranscriptome	242	N
F017604	Metagenome / Metatranscriptome	239	Y
F018933	Metagenome / Metatranscriptome	232	N
F023505	Metagenome / Metatranscriptome	209	Y
F024561	Metagenome / Metatranscriptome	205	Y
F026360	Metagenome / Metatranscriptome	198	Y
F029356	Metagenome / Metatranscriptome	188	Y
F030305	Metagenome / Metatranscriptome	185	N
F030627	Metagenome / Metatranscriptome	184	Y
F036049	Metagenome / Metatranscriptome	170	Y
F038685	Metagenome / Metatranscriptome	165	Y
F047783	Metagenome / Metatranscriptome	149	Y
F059015	Metagenome / Metatranscriptome	134	Y
F062326	Metagenome / Metatranscriptome	130	Y
F062778	Metagenome / Metatranscriptome	130	Y
F065469	Metagenome / Metatranscriptome	127	Y
F067296	Metagenome / Metatranscriptome	125	Y
F068321	Metagenome / Metatranscriptome	124	N
F068528	Metagenome / Metatranscriptome	124	Y
F076112	Metagenome / Metatranscriptome	118	Y
F080064	Metagenome / Metatranscriptome	115	Y
F080954	Metagenome / Metatranscriptome	114	Y
F082780	Metagenome / Metatranscriptome	113	Y
F088061	Metagenome / Metatranscriptome	109	Y
F088337	Metagenome / Metatranscriptome	109	N
F089697	Metagenome / Metatranscriptome	108	N
F091420	Metagenome / Metatranscriptome	107	N
F096734	Metagenome / Metatranscriptome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005496J37278_100018	Not Available	592	Open in IMG/M
Ga0005496J37278_100026	Not Available	698	Open in IMG/M
Ga0005496J37278_100078	Not Available	586	Open in IMG/M
Ga0005496J37278_100085	Not Available	684	Open in IMG/M
Ga0005496J37278_100096	Not Available	770	Open in IMG/M
Ga0005496J37278_100101	Not Available	502	Open in IMG/M
Ga0005496J37278_100155	Not Available	800	Open in IMG/M
Ga0005496J37278_100200	Not Available	782	Open in IMG/M
Ga0005496J37278_100235	Not Available	700	Open in IMG/M
Ga0005496J37278_100237	Not Available	592	Open in IMG/M
Ga0005496J37278_100307	Not Available	684	Open in IMG/M
Ga0005496J37278_100404	Not Available	579	Open in IMG/M
Ga0005496J37278_100639	Not Available	792	Open in IMG/M
Ga0005496J37278_100733	Not Available	861	Open in IMG/M
Ga0005496J37278_100822	Not Available	585	Open in IMG/M
Ga0005496J37278_100924	Not Available	763	Open in IMG/M
Ga0005496J37278_101055	Not Available	703	Open in IMG/M
Ga0005496J37278_101182	Not Available	892	Open in IMG/M
Ga0005496J37278_101240	Not Available	637	Open in IMG/M
Ga0005496J37278_101281	Not Available	564	Open in IMG/M
Ga0005496J37278_101363	Not Available	677	Open in IMG/M
Ga0005496J37278_101392	Not Available	584	Open in IMG/M
Ga0005496J37278_101463	Not Available	807	Open in IMG/M
Ga0005496J37278_101663	Not Available	989	Open in IMG/M
Ga0005496J37278_101751	Not Available	650	Open in IMG/M
Ga0005496J37278_101787	Not Available	515	Open in IMG/M
Ga0005496J37278_101871	Not Available	839	Open in IMG/M
Ga0005496J37278_102140	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	539	Open in IMG/M
Ga0005496J37278_103047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus igniterrae	587	Open in IMG/M
Ga0005496J37278_103051	Not Available	567	Open in IMG/M
Ga0005496J37278_103527	Not Available	695	Open in IMG/M
Ga0005496J37278_105380	Not Available	540	Open in IMG/M
Ga0005496J37278_105482	Not Available	762	Open in IMG/M
Ga0005496J37278_105537	Not Available	577	Open in IMG/M
Ga0005496J37278_107206	Not Available	548	Open in IMG/M
Ga0005496J37278_109278	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005496J37278_100018	Ga0005496J37278_1000181	F089697	SGVSILITRSSAGAASSGSPSGRPPAFAGAATSGCAGFQNSDLRRCPALQLDRWPTIRLGSVSCPSARPAANLRFASGVPLFRSTFGDPSSLRLTILASSGLRPTILVPSGLRRMALPPARPTTYLRLASMPSFSSAGGFIWLAPYAAPAPRLAPRPVCTGCFTLRLHRP*
Ga0005496J37278_100026	Ga0005496J37278_1000261	F014264	MIRRANVIRDYFGRGGERGKIGRLVRVSFSVWKKAEHYNPEGSRGPDGE*
Ga0005496J37278_100078	Ga0005496J37278_1000781	F003497	MHGQSMARSVVVMLALLLPVTAFIRLRISAPEPIRLFYLLEAFVSERPFARPQRLFSFENHRGEVKAPDLSLRRNSELFFQPVRPCAPTLGGVRHASGDVRRTKPVAVSRAQNSQTSIQPSLPFRTFVPPDRSAQSAAGSEKLTLAPGPFFLRSPKASITF*
Ga0005496J37278_100085	Ga0005496J37278_1000851	F096734	LQVARSSFAPRSAATILFITQRFGSSFQIRYFLPGSLSFEPL
Ga0005496J37278_100096	Ga0005496J37278_1000961	F038685	VRWPEKPAENTTGIIPGDRGKDEESWFPPPLPAAIKTAGQARSPAPLAGVMTGQLHH*
Ga0005496J37278_100101	Ga0005496J37278_1001011	F062326	PESIVSRSPATPFGARRVNAKNASSSPASRRSRKLGTAFRSPVTTLSPPLRGQRSCPAPSLPRRCFFAYPLDQRLLRSVRFRSRNRANSSPSTRCPRRSPALLRCHPISTPLQVACTFRIKAFNRLHRNKLASPDARLSFAPRGALFRFRPGSTLETRLRPARLIV
Ga0005496J37278_100155	Ga0005496J37278_1001552	F024561	VALGQRIAKSGGRPSANGEDADTESQTCLDLVRKPASANASPSELRGLTRRFSDRKALDGPAMRPKIPLAVENGVGKLAAPQGCA*
Ga0005496J37278_100200	Ga0005496J37278_1002001	F030305	PLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRC
Ga0005496J37278_100235	Ga0005496J37278_1002352	F018933	PRVAGLSLCCSRRSRIAPRSTLDSLYRPRIAPLPVLIDRCCPPIARRSTLNALPRSQIAPRSILCARGDLGLLLVHHLEPSPRLRIAPYSTLCFPLRSQIALRSVLPAPCRSRIAPRSTIDAQCRSTDISVRLHSAPRAVHGSLRAQHFMLRAVHRLLCVRRLHFARFADCSAILASCLVSHADCSVLDT*
Ga0005496J37278_100237	Ga0005496J37278_1002371	F011566	SKPDFQPCSPPACTVLNIAIGSAGRFASLLPDNRFRRLPDQCFKTRRRLLSRSGPDARSDLSLARNGCSFRSLHSEVNVPGLPLRFQLAASAARSALLLRYLNRLAPVLGGLVASGPLQSPRLVRRPRLQPPLPLGTLTSRRIKAFCWICCLSARLPNPPDSPSLPTAGFYL
Ga0005496J37278_100307	Ga0005496J37278_1003071	F017080	DESVVQPVLRPPATPETSLQLALPTPSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFRRLHCASVRPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNFRLSPVVVAAFSLRLVLLRLSSLRWLSPVCHTGGELPTRIGCNAIQLYRFRLTRLASDVSTSGWAFGAPLASTEPCIAG*
Ga0005496J37278_100404	Ga0005496J37278_1004041	F015698	SKPDSQLRSPPACTALSFVFRSAVRFCLSAPLVVFSSPPPGSTLPGAPQSLSATGPVARDGLSLPYNGLRFHGAHSRINVPGLPLRSPHSSSQARSAFRSTARCGSPRYRQLPSFSPLPARFRARSASPPTAFPIRIFTSLWINVLPDSLPIGPPSDYARSPLAPRSRLSITSRWKRINAGPLRFRRLAV
Ga0005496J37278_100639	Ga0005496J37278_1006391	F006591	GGRLLDASSRGNAEFSVSWQDRRPDCSKRLLGEAFQHDSQIPCRGTAPYKVMRPLRHGLVTAVLEVGPRELPPERWPKGTGLASYPSIDI*
Ga0005496J37278_100733	Ga0005496J37278_1007332	F006591	RGLKTGVGARHTLFPNRRSLGAPPSQVGGRLLDASPRGNAEFSVSWQDRRQDCSRRLLGEAFQRGSHGPCRGSVLHKVMRPLRHGLVTAVLQVGPRELPPERWPDGTGLASYPSIDI*
Ga0005496J37278_100822	Ga0005496J37278_1008221	F082780	GATGFDVGCEPSRAFRGAVPSLISLQTIVANQDNFAVQLAA*
Ga0005496J37278_100924	Ga0005496J37278_1009241	F080954	QRSELERTFPATQEDEDRKKSEISLRGASCGMQDSREVGTPIPGATGDAKFGSTWSFVAGWAGATATGR*
Ga0005496J37278_100945	Ga0005496J37278_1009451	F059015	RVHGTIQRPVCMRTFALRPSVPGRTAKCSPSPPFRHAMGHSFSRPQPAPSSDSHSTGTGISIRPFARSQRRFRHHCEVYVPGLHLRFHIENLGESVRFHALPLRSVSRPNRGDVNARNPLLAPIFHVPDLFPISTPLQVLFRKPSGSKRSTGSISGSPSP*TPDSFLALRHVLLRFCYVLLAPVSRLETRCVQLDISF
Ga0005496J37278_101055	Ga0005496J37278_1010551	F023505	LDDGSGRKKVDGIPEIIPGDWGKVESGWLAQPLEARFARNGNRRHNSPVPLMAFARRQ*
Ga0005496J37278_101182	Ga0005496J37278_1011822	F088337	SCLASCIFRLGQQCASGLPRTTHSLTAPATKFRVAPILQSIRLCRRQIFELPRISRPSAVPVMKPRVAPILRCSGITFDESPSCPEHCIFRLYRRWIFELPRISHPSALLVVESPSFPGLPPSCLASDKFSGLPRFPHLPAPAGCSPSFLGLHPPVSPAVNFQVAPNLLSSG*
Ga0005496J37278_101240	Ga0005496J37278_1012401	F080064	VICERCEQSLPEMEQSMTGRGSQAMSAERSAGKAGREVKGAEQSELEAEGQVSGTK*
Ga0005496J37278_101281	Ga0005496J37278_1012811	F030627	LRYVGRYAVSDRFCGDLLPARARLGPLSVRRFLRIASGRRMCGGSFRRRNHPTGWHSGFPTGRPWVFAAERRKIMPDGKARRGHPALPFPEPFPRIGLASSAVAGLFGLPWVQCSSIEGLSPRDPEASLAATLTPIAHPAFSRRLVWGGLVAGRRFPPCPHLIASHGLL*
Ga0005496J37278_101363	Ga0005496J37278_1013631	F080954	RSELERTFPATQEDEDSIEVGDSLRGASRGMQDSREVGTPIPGTTGDAKFGSRWSFVAGWAGATATGR*
Ga0005496J37278_101392	Ga0005496J37278_1013921	F091420	TEQSSRVERSETGTMIRRLITKSEWQAGSEGKSGGSHGELFSGTLN*
Ga0005496J37278_101463	Ga0005496J37278_1014632	F017604	MSKGCAETAGNTSDDNPDPEPSRKMRGQAARKGGWERGSKDEDTRSPTRRDAGDG*
Ga0005496J37278_101663	Ga0005496J37278_1016631	F067296	VSGASFLRNSQFESLAVSSGYRLANLRFAPAINPSASPSNRPPTRVGCLSPALPSNLNLEPFIDCQILQQVFRSISSLRLQLTFRPNLPAALRLPSPASLPVPPSSRPATVAACRSSSHALQSSSSLRLLSIFRLNLPVSLFDLRHVVDLPALPTNPTSDSRC*
Ga0005496J37278_101751	Ga0005496J37278_1017513	F006508	VALANALPKAVADQSQAVKTRMVHRRVFTWFASRWRNHQPKRAEKP
Ga0005496J37278_101787	Ga0005496J37278_1017871	F047783	VGLIGGVFGAFLSVAHPAQSSSNTPVASAPVTIEPGTSILLLNKGEAHASVKVDRNGLILLNLTTKTGQNQIALGVLGDSKLEVGVFDSAGKAKAGMEVPMKDSGRVHMLLLDKKNALGSYTHIES*
Ga0005496J37278_101871	Ga0005496J37278_1018712	F029356	LILNPGGKCRGRPPARVAGREEAKTRRLDRLPGETPGTDARNTVIEAEAVRPLCEVAWN
Ga0005496J37278_102140	Ga0005496J37278_1021401	F068321	HRVSLYRMLTSVSERLHSIHWFRTDSFGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSFWISVTRILATCWARFDHDRGSLSPRLVEPLAAILTRIASGVFFADDFRVALSLAADSRRARYALLRTDLAWKVGLHIRSLFLFRRVL
Ga0005496J37278_103047	Ga0005496J37278_1030471	F065469	MHRHRATQPESPGVFLSAPRHLLLKATAQCFQAHLPALLAGTGTSKRPFSLPKRLPVSGPPFRGQRSPTSSMPYRSFVLPVRSPAPPRAMVSPIPREIVTGSPLPDSRSILPIVPRISTPPRGLSNPSGSKRSIRFLTGKLTSSPPIALRSPALSPFLFGANSGSPVQARSAFSGLTVPQ
Ga0005496J37278_103051	Ga0005496J37278_1030511	F062778	LIEQLHPRRHTRHELGSQESPDGIFFAPRHSFYRTTDQRSKARLQTLPDRLRLLETAFHSLPTTTRCRVTIERSEFLAYFFAALLNFVPNPFGLVLLRRNLVSPSYGEIGATSPLPSSQLSSFAWRLNLRSLLGFLGPFRSKRSIQPPCEKLTFVLGPISLRSPLAFHFISSPTDQRSRSATAHQVYCP
Ga0005496J37278_103527	Ga0005496J37278_1035271	F088061	VPSPQPKAPIHHTTQEIQMKKLGVLLALTLAVVLLAGNALAQNVGDKSVYFVTYYSNANTAGAPQGVLRLINDGDASTAQIEGRPNGNLWASIYVFDDSQEMLECCNCFISADGLLSEWVNRELTANTVTGRVPTRGVIKIISSSTDDPTNNRLTAGIHGTQTHVQVTNPWTLTEAPLSDANLVSAEQQGLQQSCSFAITLGSGQGTCSCTPEDQDF*
Ga0005496J37278_105380	Ga0005496J37278_1053801	F015733	GMLSVRSATGCSGFSAPSSPALLFQPAPGRCRKRTLNGSNILPEPETRNGLSLARNDAFATIARSTLPTCLFASTPNTFPNPFDLGLLHSVPVSNPSQGEFNALDPLSEPISSALAISARLHSPSGLLNLPDQSVRPVPPQEARLTKRPFAPCSPQRSFSIMLRINARNPFHPAWLHRP
Ga0005496J37278_105482	Ga0005496J37278_1054821	F068528	MRTIDFCFPLPDCYEHPRLVSYRLLFETFASPLTLGLAPVARRPVNLAFHDAEPASVGSLGLARGVFLRALPIEPYL*
Ga0005496J37278_105537	Ga0005496J37278_1055371	F076112	VEIRGWIEVAGPESGNGFTVLISPEPGLTGESEGIASRTGLRKVEQGVEAAGRKLRSWNGGLETGSRYRGAKGRCEKPVPARTSVSGL*
Ga0005496J37278_107206	Ga0005496J37278_1072061	F036049	MIAPGIPLLAMTLFGGPLMGPPYTVHFACTVETDAACPTLGPGNSTDFIVRNFTDVGLATLEIPASQLLPPTDSAYEMAIHHAWIPWQLGTTWRLQDSQLSSTHNTCASEVAQLHLNPALTDLGWLRVRLWQVPSLQPQRCAIAPTVCLTDC*
Ga0005496J37278_109278	Ga0005496J37278_1092782	F026360	MAQSVVVLERNPGVARTLAGELRSHFSVHVTRSREELREDVNRTNPQAVVLNLEHWLLDDVESLHRDFPELPIVC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002661: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF145 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences