3300025210: Marine microbial communities from the Deep Atlantic Ocean - MP1092 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025210
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054791 | Ga0208058
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP1092 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98233063
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	13
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → environmental samples → uncultured Candidatus Poseidoniales archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.81
  • Long. (^o): 82.62
  • Alt. (m): N/A
  • Depth (m): 4000.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002030	Metagenome	601	Y
F005684	Metagenome / Metatranscriptome	393	Y
F006364	Metagenome / Metatranscriptome	375	Y
F014192	Metagenome	265	Y
F015491	Metagenome	254	Y
F025521	Metagenome	201	Y
F026401	Metagenome	198	N
F040684	Metagenome / Metatranscriptome	161	N
F056063	Metagenome	138	Y
F060972	Metagenome	132	Y
F074984	Metagenome / Metatranscriptome	119	N
F082562	Metagenome	113	N
F085813	Metagenome	111	N
F087736	Metagenome	110	Y
F089023	Metagenome	109	Y
F089570	Metagenome	109	N
F089571	Metagenome	109	N
F094378	Metagenome / Metatranscriptome	106	Y
F099860	Metagenome / Metatranscriptome	103	Y
F105490	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208058_1000790	All Organisms → cellular organisms → Bacteria	5973
Ga0208058_1002850	Not Available	2911
Ga0208058_1004351	Not Available	2287
Ga0208058_1004899	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2143
Ga0208058_1009840	Not Available	1418
Ga0208058_1011379	Not Available	1302
Ga0208058_1011986	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1261
Ga0208058_1016028	Not Available	1059
Ga0208058_1017785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	994
Ga0208058_1021734	Not Available	880
Ga0208058_1022538	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → environmental samples → uncultured Candidatus Poseidoniales archaeon	860
Ga0208058_1022935	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	851
Ga0208058_1032905	Not Available	679
Ga0208058_1034179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664
Ga0208058_1034865	Not Available	655
Ga0208058_1036873	Not Available	633
Ga0208058_1038642	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	614
Ga0208058_1041515	Not Available	586
Ga0208058_1044756	Not Available	557
Ga0208058_1047292	Not Available	537
Ga0208058_1050232	Not Available	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208058_1000790	Ga0208058_10007903	F089571	MLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYEQRNYIPLPEDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLKKFE
Ga0208058_1002850	Ga0208058_10028501	F089023	MDNVSLGSAEEPYDSDMTHSYRLTEGRLIRYPLQRGRLIGVGT
Ga0208058_1004351	Ga0208058_10043513	F087736	MMKTVAMMQVMTITGRPTLAHSAVVIGLGPRSLMATVITLALEPMGVALPPNPAPMARAQNRGAMSMLG
Ga0208058_1004899	Ga0208058_10048993	F082562	MNNIILMKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI
Ga0208058_1009840	Ga0208058_10098401	F040684	VFSQGKPCCKNKNGKGKVACKFNQANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNTSINKKNCTNCAKSPWWKFWGKKKGCCNTNS
Ga0208058_1011379	Ga0208058_10113792	F026401	MPKVFMIKVESILKWTIEGSLLKKLKMVRAQILSKNSDAVAISDNDLHITLAAGTGWQKLKSRIKAKDIDEPEFSMDINPTVKVIEKGGSKSWYVKLKNQQDWKEYVMDSLQGTYDSGRVYHISLANLTGNKVDSVALVVEQKNHHNINAKKYHKKFKDFRKRY
Ga0208058_1011986	Ga0208058_10119861	F089571	DKKVILNDDGTWEYIEEGKQNNNYKRVPPKTYDYEFKPQTWEERLEQAAHEYWRIRAYADLDKLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK
Ga0208058_1016028	Ga0208058_10160281	F094378	NHLGNFQAKGPYIITLERRRSLTEGVNLSGNKTEGVY
Ga0208058_1017785	Ga0208058_10177852	F089570	MRNHCFKFLFFFFCILFLNTKFPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKEKLGINEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLVNVKKILSTINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFETYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI
Ga0208058_1021734	Ga0208058_10217341	F056063	MKSFKGYLIERGTSLSDLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDSDGVKSISKLEGKKGQISAFFSMFSRYMEVGVATQGGVHAVLEMDADVLLSA
Ga0208058_1021734	Ga0208058_10217342	F000245	MKTFKQFDETKLDDKLDKLVSDEIKKRKLAKFPVNATDDYTMKKGKPAFKFPSPSGSMMIHVWLRKMLPSKGQPKGMMAFNYQLEDK
Ga0208058_1022538	Ga0208058_10225382	F005684	VYDTEESPLSAMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPRRSKSKQVRMASTGPGRMHS
Ga0208058_1022935	Ga0208058_10229352	F099860	STTSYTATAAVGNTTVNVMEAVGAEWDTIQLDSTDGAPASNAGEKVILEDASESDDGDMTFLQMEKQTTGTQMNYYFTIAGSDGAGELSVARQAITLNSSTFKEAGDTETADSGIMQQVSASIANAAVTMA
Ga0208058_1032905	Ga0208058_10329051	F060972	MTCHSEVHKYVVGIEYDSPDEDKGFFDIRRTVSLKELAVEVADYLANGKSSYPAFPPEANPEVWYAWDMDDPEDGDIYQDLLFEINKINDAKRKVA
Ga0208058_1034179	Ga0208058_10341792	F014192	DFLFLYLDCVLFLTFEIKNNKIENVKKFINVKLYGAKPRIVIAPSKKGAKNITNNLLLSLAIKLKSLLLIN
Ga0208058_1034865	Ga0208058_10348651	F074984	MNNKTNTAEVILFNILYMFMNCDFDVLDKEAEIIENTMRELTDEEKKIIESQIKDNENIISKGFDKIKSRTMEMGKLINETKDSEGIKKSFIEVIKAMILIDGVIHKNEKTMFNELCKLWDVESALEIE
Ga0208058_1036873	Ga0208058_10368732	F006364	MELEIDNDTRKMRIINYLDYMDDKSLREISVALYNLSIRRREISNKKQKELVDESGK
Ga0208058_1038642	Ga0208058_10386422	F015491	SSYELEWIKIMKQTKRQRRVKVPARPQVTPRKWSKKTARIFDKQFDRFLYDELYVPTKKAWGEEIKPYERDMFGGK
Ga0208058_1041515	Ga0208058_10415151	F002030	VCLWLLIEERKSPKFLIWFIPVLLILVTSTYVTYTSLLGFPKVGIPERGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGDQKGGRSGEGYTIGGDISFYKWDFTDNMPPKNTQE
Ga0208058_1044756	Ga0208058_10447562	F105490	MKGRTGKRLRQEGAINRTELTIEKYEKILPAEKELLKVGRKEKDLPPNVIPMLEKKIKHFEEKLERAKT
Ga0208058_1047292	Ga0208058_10472921	F085813	MDQFEIIWILATVIGALNYGLNAYQKGFRRLLKWDVIFLIILNTLMFVPLSLIVVL
Ga0208058_1050232	Ga0208058_10502322	F025521	MMLLAVYKNKRYKTINVPLSEKDLVKQMLKERGIEWYTMSWCEGEKEDVKLLEKCN