Metagenome / Metatranscriptome Family F093041

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093041
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	64 residues
Representative Sequence	MMAKSQKAFRRAALLRSKTAWLFCHILIAMSIGRMILRIIRCQTCRLAAKSIEFSIDFAI
Number of Associated Samples	41
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.46 %
% of genes near scaffold ends (potentially truncated)	35.85 %
% of genes from short scaffolds (< 2000 bps)	67.92 %
Associated GOLD sequencing projects	35
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (69.811 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (54.717 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut (85.849 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.91% β-sheet: 0.00% Coil/Unstructured: 34.09%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13347	MFS_2	2.86
PF00535	Glycos_transf_2	1.90
PF00486	Trans_reg_C	1.90
PF14198	TnpV	1.90
PF09479	Flg_new	1.90
PF01476	LysM	1.90
PF01208	URO-D	0.95
PF00160	Pro_isomerase	0.95
PF01547	SBP_bac_1	0.95
PF00701	DHDPS	0.95
PF09365	DUF2461	0.95
PF01381	HTH_3	0.95
PF05592	Bac_rhamnosid	0.95
PF13187	Fer4_9	0.95
PF03631	Virul_fac_BrkB	0.95
PF13416	SBP_bac_8	0.95
PF01424	R3H	0.95
PF01580	FtsK_SpoIIIE	0.95
PF03721	UDPG_MGDP_dh_N	0.95
PF04525	LOR	0.95
PF00150	Cellulase	0.95
PF00528	BPD_transp_1	0.95
PF13173	AAA_14	0.95
PF01699	Na_Ca_ex	0.95
PF08282	Hydrolase_3	0.95
PF05105	Phage_holin_4_1	0.95
PF00126	HTH_1	0.95
PF00216	Bac_DNA_binding	0.95
PF01969	Ni_insertion	0.95
PF02559	CarD_CdnL_TRCF	0.95
PF01863	YgjP-like	0.95
PF00009	GTP_EFTU	0.95
PF14534	DUF4440	0.95
PF10974	DUF2804	0.95
PF00753	Lactamase_B	0.95
PF01649	Ribosomal_S20p	0.95
PF01553	Acyltransferase	0.95
PF08769	Spo0A_C	0.95
PF02447	GntP_permease	0.95
PF02595	Gly_kinase	0.95
PF00731	AIRC	0.95
PF13472	Lipase_GDSL_2	0.95
PF00395	SLH	0.95
PF01197	Ribosomal_L31	0.95
PF01569	PAP2	0.95
PF03483	B3_4	0.95
PF00583	Acetyltransf_1	0.95
PF03449	GreA_GreB_N	0.95
PF01668	SmpB	0.95
PF02922	CBM_48	0.95
PF00496	SBP_bac_5	0.95
PF13421	Band_7_1	0.95
PF00501	AMP-binding	0.95
PF12685	SpoIIIAH	0.95
PF04227	Indigoidine_A	0.95
PF13727	CoA_binding_3	0.95
PF00072	Response_reg	0.95
PF00550	PP-binding	0.95
PF13333	rve_2	0.95
PF00403	HMA	0.95
PF00005	ABC_tran	0.95
PF14681	UPRTase	0.95
PF01471	PG_binding_1	0.95
PF00113	Enolase_C	0.95
PF02583	Trns_repr_metal	0.95
PF02826	2-Hacid_dh_C	0.95
PF00886	Ribosomal_S16	0.95
PF04203	Sortase	0.95
PF03553	Na_H_antiporter	0.95
PF00135	COesterase	0.95
PF00596	Aldolase_II	0.95
PF13186	SPASM	0.95
PF02397	Bac_transf	0.95
PF14276	DUF4363	0.95
PF08531	Bac_rhamnosid_N	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.90
COG2610	H+/gluconate symporter GntT or related permease, GntP/DsdX family	Carbohydrate transport and metabolism [G]	1.90
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	1.90
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.95
COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	Cell cycle control, cell division, chromosome partitioning [D]	0.95
COG1847	Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domains	General function prediction only [R]	0.95
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.95
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.95
COG1929	Glycerate kinase	Carbohydrate transport and metabolism [G]	0.95
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	0.95
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.95
COG2313	Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)	Nucleotide transport and metabolism [F]	0.95
COG1641	CTP-dependent cyclometallase, nickel-pincer nucleotide (NPN) cofactor biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.95
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.95
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.95
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.95
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.95
COG4824	Phage-related holin (Lysis protein)	Mobilome: prophages, transposons [X]	0.95
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.95
COG0652	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	0.95
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.95
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	0.95
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	0.95
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.95
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.95
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.95
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.95
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.95
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.95
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.95
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.95
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.95
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.95
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	57.55 %
Unclassified	root	N/A	30.19 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.94 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	55.66 %
Unclassified	root	N/A	30.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.89 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	42.45 %
Unclassified	root	N/A	30.19 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	39.62 %
Unclassified	root	N/A	30.19 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.94 %
unclassified Clostridia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6.60 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5.66 %
unclassified Eubacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales	3.77 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.94 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Clostridiales bacterium NK3B98	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	1.89 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.89 %
Lachnoclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	0.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.94 %
Robinsoniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella	0.94 %
Butyricicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	0.94 %
unclassified Oscillospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae	0.94 %
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	0.94 %
Butyrivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	0.94 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Clostridiales bacterium NK3B98	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	1.89 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.89 %
unclassified Butyricicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus	0.94 %
Oscillospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	0.94 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.94 %
Robinsoniella peoriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	0.94 %
Lachnoclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	0.94 %
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	0.94 %
Butyrivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	0.94 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Clostridiales bacterium NK3B98	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	1.89 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.89 %
Butyricicoccus sp. OF13-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. OF13-6	0.94 %
Oscillospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	0.94 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.94 %
Robinsoniella peoriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	0.94 %
Lachnoclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	0.94 %
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	0.94 %
Butyrivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	0.94 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2061766007\|rumenHiSeq_NODE_580528_len_55998_cov_5_536341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56048	Open in IMG/M
2061766007\|rumenHiSeq_NODE_580528_len_55998_cov_5_536341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56048	Open in IMG/M
2081372005\|SRM_contig48605	Not Available	571	Open in IMG/M
2088090000\|SRMUA_GMSDS1U03GR1NX	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	508	Open in IMG/M
2236876025\|CowRDRAFT01_c0174918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	615	Open in IMG/M
3300010163\|Ga0136175_10030176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8185	Open in IMG/M
3300010163\|Ga0136175_10204845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. OF13-6	1577	Open in IMG/M
3300010282\|Ga0129307_1010927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3287	Open in IMG/M
3300010282\|Ga0129307_1023903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1653	Open in IMG/M
3300010282\|Ga0129307_1024543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1618	Open in IMG/M
3300014043\|Ga0120385_1126998	Not Available	539	Open in IMG/M
3300014047\|Ga0120381_1017658	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300018495\|Ga0187908_10896536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	918	Open in IMG/M
3300021254\|Ga0223824_10026398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	5455	Open in IMG/M
3300021254\|Ga0223824_10047194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3967	Open in IMG/M
3300021254\|Ga0223824_10067269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3284	Open in IMG/M
3300021254\|Ga0223824_10083125	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
3300021254\|Ga0223824_10088396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2831	Open in IMG/M
3300021254\|Ga0223824_10260693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1530	Open in IMG/M
3300021254\|Ga0223824_10586212	Not Available	898	Open in IMG/M
3300021254\|Ga0223824_10708735	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300021254\|Ga0223824_10757270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	747	Open in IMG/M
3300021254\|Ga0223824_10812157	Not Available	709	Open in IMG/M
3300021255\|Ga0223825_11127816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6228	Open in IMG/M
3300021255\|Ga0223825_12584076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	4540	Open in IMG/M
3300021256\|Ga0223826_10183724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1837	Open in IMG/M
3300021256\|Ga0223826_10835621	Not Available	666	Open in IMG/M
3300021306\|Ga0214508_1052758	Not Available	520	Open in IMG/M
3300021387\|Ga0223845_10635418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1811	Open in IMG/M
3300021387\|Ga0223845_11258552	Not Available	1036	Open in IMG/M
3300021387\|Ga0223845_12471157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1226	Open in IMG/M
3300021387\|Ga0223845_12742381	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	744	Open in IMG/M
3300021387\|Ga0223845_12881447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	645	Open in IMG/M
3300021387\|Ga0223845_12969105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17498	Open in IMG/M
3300021400\|Ga0224422_10058745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8434	Open in IMG/M
3300021400\|Ga0224422_10685986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3150	Open in IMG/M
3300021400\|Ga0224422_10963453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1718	Open in IMG/M
3300021400\|Ga0224422_11853687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	59192	Open in IMG/M
3300021400\|Ga0224422_12897490	Not Available	854	Open in IMG/M
3300021426\|Ga0224482_11128420	Not Available	529	Open in IMG/M
3300021431\|Ga0224423_10001545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	36381	Open in IMG/M
3300021431\|Ga0224423_10004390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18358	Open in IMG/M
3300021431\|Ga0224423_10008358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12039	Open in IMG/M
3300021431\|Ga0224423_10550924	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300022601\|Ga0216345_10525010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	661	Open in IMG/M
3300023707\|Ga0257072_1002979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12599	Open in IMG/M
3300024270\|Ga0257091_10984702	Not Available	896	Open in IMG/M
3300024337\|Ga0255060_10249284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	871	Open in IMG/M
3300024337\|Ga0255060_10351230	Not Available	733	Open in IMG/M
3300024337\|Ga0255060_10624495	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300024342\|Ga0255061_10263373	Not Available	893	Open in IMG/M
3300024342\|Ga0255061_10343669	Not Available	777	Open in IMG/M
3300024342\|Ga0255061_10421430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	697	Open in IMG/M
3300024345\|Ga0255062_10544326	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300024486\|Ga0255059_10633741	Not Available	503	Open in IMG/M
3300026525\|Ga0256870_1019436	Not Available	2877	Open in IMG/M
3300026549\|Ga0256404_1192606	Not Available	973	Open in IMG/M
3300028048\|Ga0256405_10007483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16409	Open in IMG/M
3300028048\|Ga0256405_10043334	All Organisms → cellular organisms → Bacteria	3863	Open in IMG/M
3300028048\|Ga0256405_10062690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2982	Open in IMG/M
3300028048\|Ga0256405_10094864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2242	Open in IMG/M
3300028048\|Ga0256405_10114066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1976	Open in IMG/M
3300028048\|Ga0256405_10118227	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300028048\|Ga0256405_10179993	Not Available	1433	Open in IMG/M
3300028048\|Ga0256405_10355653	Not Available	849	Open in IMG/M
3300028591\|Ga0247611_10080877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3333	Open in IMG/M
3300028591\|Ga0247611_10442565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1399	Open in IMG/M
3300028591\|Ga0247611_10577778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	1201	Open in IMG/M
3300028591\|Ga0247611_10754957	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300028591\|Ga0247611_11731035	Not Available	595	Open in IMG/M
3300028591\|Ga0247611_11839748	Not Available	571	Open in IMG/M
3300028797\|Ga0265301_10611554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	805	Open in IMG/M
3300028797\|Ga0265301_11128600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	560	Open in IMG/M
3300028833\|Ga0247610_10173845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2202	Open in IMG/M
3300028833\|Ga0247610_10792348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	974	Open in IMG/M
3300028833\|Ga0247610_11262165	Not Available	727	Open in IMG/M
3300028833\|Ga0247610_11568315	Not Available	629	Open in IMG/M
3300028886\|Ga0256407_10021829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	7624	Open in IMG/M
3300028886\|Ga0256407_10639018	Not Available	770	Open in IMG/M
3300028888\|Ga0247609_10769369	Not Available	1008	Open in IMG/M
3300028888\|Ga0247609_11042511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	838	Open in IMG/M
3300028888\|Ga0247609_12036456	Not Available	536	Open in IMG/M
3300028888\|Ga0247609_12164970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	513	Open in IMG/M
3300031555\|Ga0318466_12933399	Not Available	576	Open in IMG/M
3300031867\|Ga0326511_11059425	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300031867\|Ga0326511_11135170	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031867\|Ga0326511_11959063	Not Available	528	Open in IMG/M
3300031992\|Ga0310694_10677930	Not Available	1039	Open in IMG/M
3300031993\|Ga0310696_11053872	Not Available	849	Open in IMG/M
3300031994\|Ga0310691_10306923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1745	Open in IMG/M
3300031994\|Ga0310691_10655178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	1147	Open in IMG/M
3300031994\|Ga0310691_10727210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1078	Open in IMG/M
3300031994\|Ga0310691_11160965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	799	Open in IMG/M
3300032007\|Ga0310695_10008534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15790	Open in IMG/M
3300032007\|Ga0310695_10041997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4912	Open in IMG/M
3300032030\|Ga0310697_10025872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5366	Open in IMG/M
3300032030\|Ga0310697_10097424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2842	Open in IMG/M
3300032030\|Ga0310697_10165366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2214	Open in IMG/M
3300032030\|Ga0310697_10570842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1171	Open in IMG/M
3300032030\|Ga0310697_10876147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	906	Open in IMG/M
3300032030\|Ga0310697_11431356	Not Available	656	Open in IMG/M
3300032038\|Ga0326512_11294827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	520	Open in IMG/M
3300033463\|Ga0310690_11291190	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300033463\|Ga0310690_11309205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	794	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	88.68%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	10.38%
Stomach	Host-Associated → Mammals → Digestive System → Stomach	0.94%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	88.68%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	8.49%
Cecum	Host-Associated → Mammals → Digestive System → Large Intestine → Cecum	1.89%
Unclassified	Host-Associated → Mammals → Digestive System → Stomach → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	54.72%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	28.30%
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	5.66%
Capybara Group Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal	2.83%
Ictidomys Tridecemlineatus Cecum	Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Ictidomys Tridecemlineatus Cecum	1.89%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	1.89%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	1.89%
Rangifer Tarandus Platyrhynchus Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rangifer Tarandus Platyrhynchus Rumen	1.89%
Switchgrass-Associated Bovine Rumen	Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2061766007	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470	Host-Associated	Open in IMG/M
2081372005	Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549	Host-Associated	Open in IMG/M
2088090000	Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549	Host-Associated	Open in IMG/M
2236876025	Switchgrass-associated rumen community WFO	Host-Associated	Open in IMG/M
3300010163	Cecal microbial community of the 13 lined ground squirrel in Duluth, Minnesota, USA. Combined Assembly of 10 SPs	Host-Associated	Open in IMG/M
3300010282	Capybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome	Host-Associated	Open in IMG/M
3300014043	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1248	Host-Associated	Open in IMG/M
3300014047	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1003	Host-Associated	Open in IMG/M
3300018495	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2	Host-Associated	Open in IMG/M
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021306	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3	Host-Associated	Open in IMG/M
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021400	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated	Open in IMG/M
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300022601	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol (v2)	Host-Associated	Open in IMG/M
3300023707	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3 Spades (v2)	Host-Associated	Open in IMG/M
3300024270	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1 Spades (v3)	Host-Associated	Open in IMG/M
3300024337	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024342	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024486	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300026525	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300026549	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01	Host-Associated	Open in IMG/M
3300028048	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02	Host-Associated	Open in IMG/M
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028797	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04	Host-Associated	Open in IMG/M
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated	Open in IMG/M
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300031555	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.(v2)	Host-Associated	Open in IMG/M
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated	Open in IMG/M
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated	Open in IMG/M
3300031993	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)	Host-Associated	Open in IMG/M
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032007	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2)	Host-Associated	Open in IMG/M
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated	Open in IMG/M
3300033463	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
_HiSeq_09664360	2061766007	Bovine Rumen	MAKSQEAFRRAALRRSKTARLFCHIFIAMSIGRMIERIIRCQTCRLAAKSIETSIDFANR
_HiSeq_09664380	2061766007	Bovine Rumen	MAKSQEAFRRAALRRSKTARLFCHIFIAMSIGRMIERIIRCQTCRLAAKSIETSIDFAIR
SRM_00400330	2081372005	Rangifer Tarandus Platyrhynchus Rumen	MIIDGEKPKSFSPRALLRSKTARLFCHILIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIR
SRMUA_05074510	2088090000	Rangifer Tarandus Platyrhynchus Rumen	MKLSSPFLACQQYHDDRKAKSQKAFRRAALLRSKTAPLFCPVLIAMSIGRMIQRIIRCQTCRLAAKSIETSIDIAIRCSL
CowRDRAFT01_01749182	2236876025	Switchgrass-Associated Bovine Rumen	MMAKSEKVFRRTALRRSKTARLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIRRSVHPEQETEGEKP
Ga0136175_100301761	3300010163	Ictidomys Tridecemlineatus Cecum	MLGTHNDYMMAKRHKAFRRAALLLSRTAMLFCHIFIAMSIAQMILSIICCQTCRLA
Ga0136175_102048452	3300010163	Ictidomys Tridecemlineatus Cecum	VNPIDFYAYARYNDYMMANRHKAFRRAALLLSRTAKLLCHIFIAMSIAQMILSIICCQTCRLTAKAIEDSIAFAMR*
Ga0129307_10109271	3300010282	Capybara Group Fecal	MMAKSQNAFRRAALRRSKTALLFCHISIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAIR*
Ga0129307_10239031	3300010282	Capybara Group Fecal	MLPLFHYNDYMMAKSQNAFRRAALRHSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLVAKSIELSIDFAIR*
Ga0129307_10245431	3300010282	Capybara Group Fecal	DYMMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAIR*
Ga0120385_11269981	3300014043	Sheep Rumen	MMAKSQKAFRRAALRRSKTAWLFCHILIAMSVGRMIQRIIRCQTCRLAAKSIESSIDFAIR*
Ga0120381_10176582	3300014047	Sheep Rumen	YMMAKRRKAFRRAALLLSAAARLWRHIFIAMSIARMIHRIIRCQTCRLATKSIEFSIDFVMR*
Ga0187908_108965361	3300018495	Goat Feces	ITDNDYKMAKNEKVFRRAVLRRSKTAWLFCHIFIAINIRRMIHGIIRGQTCRLAAKSIEFSIDFAIR
Ga0223824_100263984	3300021254	Cattle And Sheep Rumen	MMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLVAKSIESSIDFAI
Ga0223824_100471942	3300021254	Cattle And Sheep Rumen	MMAERHTAFRRAAWRLRAAAGLLRHIFIAMSIARMMIKIIRCQTCRLATRSIEFSIDLAM
Ga0223824_100672695	3300021254	Cattle And Sheep Rumen	MMAKSQKAFRCAALPRSKTARLFCHILIAMSIGRMIMKIIRCQTCRLAAKSIELPIDFAI
Ga0223824_100831253	3300021254	Cattle And Sheep Rumen	MTKSQKAFRRAAKLGSKTAWLFCRIFIAMSIGRMMERIIRCQTCGLAAKSIEASIDFTIR
Ga0223824_100883961	3300021254	Cattle And Sheep Rumen	MNYFAADDNDYMMAKSEKAFRRAALLRSKTALLFCHILIAKSIGRMIYRIIRCQTCRLAA
Ga0223824_102606933	3300021254	Cattle And Sheep Rumen	MIIRWRKAKIAFRRAALRRSKTARLFCHILIAMSIGRMIQRIIRCQACRLAAKSIDPPIDFAIR
Ga0223824_105862122	3300021254	Cattle And Sheep Rumen	MTAKSEYAFRRAALLRSETALLFCHIRIAMSIGRMIERIIRCQTCRLAA
Ga0223824_107087351	3300021254	Cattle And Sheep Rumen	MMAKSEKAFRRAALLRSKTALLFCHILIAMSIGRMIQGIIRCQTCRLAAKSIEFSIDFAI
Ga0223824_107572702	3300021254	Cattle And Sheep Rumen	MAKRRRAFRRAALLLSAAGWLLRRIFIAMNIARMIQRIILHKTYRFVEKTIEKSIVFSRR
Ga0223824_108121572	3300021254	Cattle And Sheep Rumen	MAKSPKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDF
Ga0223825_111278166	3300021255	Cattle And Sheep Rumen	MMAKSSKAFRRAASRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAI
Ga0223825_125840766	3300021255	Cattle And Sheep Rumen	MMANSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRFAAKSIEASIDFSI
Ga0223826_101837242	3300021256	Cattle And Sheep Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFLAMSIGRMIHRIIRCQTYRLAAKSIEASIDFAI
Ga0223826_108356212	3300021256	Cattle And Sheep Rumen	HLTVEHNEYRIAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0214508_10527582	3300021306	Goat Feces	MMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAI
Ga0223845_106354183	3300021387	Cattle And Sheep Rumen	NDYMVAKSRQAFRRAALLRSKTASLFFHIYIAMNIGRMIWRIIRCQTCRLAATSIEYSIDVASR
Ga0223845_112585522	3300021387	Cattle And Sheep Rumen	MMAKSQKAFRRAALRRSKTAALFCHILIVMNIGRMILRIIRCQICHLAAKSIDFSIDFAI
Ga0223845_124711573	3300021387	Cattle And Sheep Rumen	ETLKAFRRAALRLSTVETLLCQISNAMSIARMISQIIRCQTCRLAAKSIEISIDFAMR
Ga0223845_127423813	3300021387	Cattle And Sheep Rumen	MMAKSEKAFRRAALLRSKTALLFCHILIAMSIGRMIFRIIRCQTTSLAAKSIESSIDFAIRRSL
Ga0223845_128814471	3300021387	Cattle And Sheep Rumen	MAKSQKAFRRAALQRSKTAPLFCPIFLAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIQ
Ga0223845_1296910511	3300021387	Cattle And Sheep Rumen	MKAKSQKAFRRAALLRSKTAWLFCHIFIAMSIGRMILRIIRCQTCRLAAKSIESSIDFAI
Ga0224422_100587458	3300021400	Cattle And Sheep Rumen	MMAKSEKAFRRVALLRSKTALLFCHILIAMSIGRMIFKIIRCQTCRLAAKSIEYSIDFAI
Ga0224422_106859862	3300021400	Cattle And Sheep Rumen	MMAKSQKAFHRAALRRSKTAALFCHILIAMNIRRMIHRIIRCQTCRLAAKSIESSIDFAI
Ga0224422_109634532	3300021400	Cattle And Sheep Rumen	MMAKSQKAFRRAALLRSKTAWLFCHILIAMSIGRMILRIIRCQTCRLAAKSIEFSIDFAI
Ga0224422_118536874	3300021400	Cattle And Sheep Rumen	MNYFAADDNDYMMAKSEKAFRRAALLRSKTALLFCHILIAKSIGRMIYRIIRCQTCRLAAKSIEFSIDFAIR
Ga0224422_128974901	3300021400	Cattle And Sheep Rumen	MAKRQKAFRRAALLLRTAEQLLCQILIAMSIARMIQKIIRCETCRLAAKSIEFSIDFAMR
Ga0224482_111284202	3300021426	Cattle And Sheep Rumen	RILSSYNDYMMAKSSKAFRRAALRRSKTAGLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIR
Ga0224423_100015458	3300021431	Cattle And Sheep Rumen	MMAKSQKAFRRAALPRSKTARLFCHILIAMSIGRMIERIIRCQTCRLAAKSIETSIDLAIRWSR
Ga0224423_1000439017	3300021431	Cattle And Sheep Rumen	MTAKSEYAFRRAALLRSETALLFCHIRIAMSIGRMIERIIRCQTCRLAAKSIEFSIDFA
Ga0224423_100083581	3300021431	Cattle And Sheep Rumen	MMAKSEKAFRRAALLRSKTALLFCHIRIAMSIGRMIERIIRCQTCRLAAKSIEFSIDFA
Ga0224423_105509243	3300021431	Cattle And Sheep Rumen	MAKSEKAFRHAALLRSKTALLFCHILIAMSVGRMIQRIIRCQTFRLAAKTIESSIVFTIR
Ga0216345_105250102	3300022601	Goat Feces	MAKNEKVFRRAVLRRSKTAWLFCHIFIAINIRRMIHGIIRGQTCRLAAKSIEFSIDFAI
Ga0257072_100297910	3300023707	Goat Feces	MLSPFPYNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0257091_109847023	3300024270	Goat Feces	MMAKSSKAFRRAALRRGKTAGLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSSEVSIDFAI
Ga0255060_102492841	3300024337	Rumen	SEKAFRRAALLPGKTALLFCHIRIAMSIGRMIIRIIRCQTCRLAAKSIESSIDFAIR
Ga0255060_103512302	3300024337	Rumen	MAKSYKAFRRAALLRSKTAQLFCHIFIAMSIERMIQRIIRCQTCRLAAKSIEVSIDFAIR
Ga0255060_106244952	3300024337	Rumen	MYGFLLVFLPDYYNKYMMAKKRTVFRRAALRHSKTAQLFCHIFIAMSIARMIQRIIRCQTCRLAAKSIEASIDFAIRWSL
Ga0255061_102633732	3300024342	Rumen	MRFHGYHYNDYLMAKSRKAFRRAASRRSKTAGLFCQIVIAMSIGRMIQRIIRCQTCRLAAKAIEFSIAFVVRRLL
Ga0255061_103436692	3300024342	Rumen	MAQPSQRSSRYNVYNDYMMAKSEYAFRRAALLRSKTAWLFCHILIAMSIGRMIFRIIRCQTCRLAAKSIEFSIDFAIR
Ga0255061_104214302	3300024342	Rumen	MMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAI
Ga0255062_105443261	3300024345	Rumen	LPLVDHDYMMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAFR
Ga0255059_106337411	3300024486	Rumen	MMAKSEKAFRRAALLPGKTALLFCHIRIAMSIGRMIIRIIRCQTCRLAAKSIESSIDFAI
Ga0256870_10194364	3300026525	Rumen	MAKRLLVFRRAALLLSTAEYLLCQICIAMSIARMIQKIIRCQTCRLAAKSIEFSIDFVMR
Ga0256404_11926062	3300026549	Rumen	RARNLSSPWKTNNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0256405_100074836	3300028048	Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRLSAKSIEASIDFAI
Ga0256405_100433343	3300028048	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLLAKSIELSIDFAI
Ga0256405_100626904	3300028048	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLA
Ga0256405_100948641	3300028048	Rumen	MIAKSQKAFRRVALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIEPSIDFAI
Ga0256405_101140662	3300028048	Rumen	MTRDNDYMMAKSQKAFRRAALRRSKTALLFCHISIAMSIGRMMQRIIRCQTSRLAAKSIELSIDFAIR
Ga0256405_101182273	3300028048	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIEPSFDFAI
Ga0256405_101799932	3300028048	Rumen	MMAKSQNAFRRAALRRSKTAPLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIEPSIDFAI
Ga0256405_103556532	3300028048	Rumen	MAKSQKAFRRAALRRSKTAQKFCYIFIAMSIGRMIQRIVRCRTCRLAAKSIESLIDFAIR
Ga0247611_100808771	3300028591	Rumen	MAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESPLDFAIR
Ga0247611_104425652	3300028591	Rumen	MILEETNERYNDYMMAKSQKAFRRAALRRSKTARLFCHIFIAMSIRRMIQRIIRRQTCRLAAKSIESSIDFAI
Ga0247611_105777781	3300028591	Rumen	ANKAFRRAALRRSKTARLFCHIFIAMSIGRMIYIIIRCQTCRLAAKSIESSIDFAI
Ga0247611_107549572	3300028591	Rumen	MAKSQKAFRRAALLRSKTALLFCPIFITMSIGRMIQRIIRCQTCRLAAKSIEASIDLLTDDHYNGMYDTA
Ga0247611_117310352	3300028591	Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRLAAKSIEASIDFAI
Ga0247611_118397483	3300028591	Rumen	MAKRRKAFRRAALQLSAVALLQRHILIAMSIARMIIKIIRRQTCRLAAKSIEASIDFAMR
Ga0265301_106115542	3300028797	Rumen	KNDNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0265301_111286002	3300028797	Rumen	MMAKRRKAFRRAALRLSKTATLFCHIFIEMSIGRMIFQIIRCQTCRLAAKTIEDSIVFAI
Ga0247610_101738453	3300028833	Rumen	MAKSQKAFRRAGLRRSKTARLFCQILIAMSIGQMIYEIICCQTCRLAAKSIETPIDFAIR
Ga0247610_107923481	3300028833	Rumen	FIYNDYMMAKRRKAFRRAALLLSAAAWLRRLIFIAMSIARMILRIIRRQTCRLAVKSIESSIDFT
Ga0247610_112621652	3300028833	Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRFAAKSIEASIDFAI
Ga0247610_115683151	3300028833	Rumen	MRFHGYHYNDYLMAKSRKAFRRAASRRSKTAGLFCQIVIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFALRCSLYKIVG
Ga0247610_117964412	3300028833	Rumen	ISLQIVLSFSRLLCYNNVYMMAKSEKAFRRAALLPGKTALLFCHIRIAMSIGRMIIRIIRCQTCRLAAKSIESSIDFAIR
Ga0256407_100218291	3300028886	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAI
Ga0256407_103401603	3300028886	Rumen	RLMSRDTFKYLSKRIPLLLISDNDYMMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIELSIDFAIR
Ga0256407_106390183	3300028886	Rumen	TAPSDNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0247609_107693692	3300028888	Rumen	MAKSEKAFRRAAELRSKTAQLFCHILIAMSIGRMIQRIIRCQACRLATKSIESPIDFAIR
Ga0247609_110425112	3300028888	Rumen	MMAERLKSFRRAALLLSAAAWLRRHIFIAMSIARMISGIIRCQNCRLAAKSIKIPIDFAV
Ga0247609_120364561	3300028888	Rumen	MAASHNDYMMAKRRKAFRRAALLLSAAAGLLRHIFIAMSIARMIIWIIRCQTYRLAAKSIETSIDFAM
Ga0247609_121649702	3300028888	Rumen	MAKSYKAFRRAALLRSKTAQLFCHIFIAMSIERMIQRIIRCQTCRLAAKSIEASIDFAIR
Ga0318466_129333991	3300031555	Goat Feces	MMAKSSKAFRRAALRRGKTAGLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIEFSIDFAI
Ga0326511_110594252	3300031867	Rumen	MLFPTFAVHNEYRMAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0326511_111351702	3300031867	Rumen	PLRHAALRHNDYMMAKSEKAFRRAALLRSKTALLFCHILIAMSIGRMIFRIIRCQTCRLAAKSIEYSIDFAIR
Ga0326511_119590631	3300031867	Rumen	DNDYKMAKSKKTFRRAALPRSKTALLFCHILIAMSIGQRIQRIICCQTCRLTAKSIIALIDFAIR
Ga0310694_106779302	3300031992	Rumen	LFLPLVDHDYMMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAIR
Ga0310696_110538722	3300031993	Rumen	RWRIEMITGCFLCVNRPHNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0310691_103069232	3300031994	Rumen	MAKSQKAFRRATLWRSKTAVLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0310691_106551781	3300031994	Rumen	MQRSYNDYMMAKSQKAFRRAALLRSKTAWLFCHILIAMSIGRMILRIIRCQTCRLAAKSIEFSIDFAIR
Ga0310691_107272101	3300031994	Rumen	IRAPPRSAFFYNDYMMAKSQEAFRRAALPRSQTGSLFGHIFISMSIGRMTLWAIRCQTCRLAARTIEFAIVLAIR
Ga0310691_111609653	3300031994	Rumen	MTKSEKAFRRAALRRSKTARLFCHIFIAMSIGRMIQGIFRCQTCRLAAQSIESSID
Ga0310695_1000853415	3300032007	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIEPSIDFAI
Ga0310695_100419971	3300032007	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIESSIDF
Ga0310697_100258724	3300032030	Rumen	MMAKRLKAFRRAALLLSAAAWLRRHIFIAMSIARMILKIIRCQTCRLAAKSIEISIDFTM
Ga0310697_100974242	3300032030	Rumen	MMAKRRKAFRRAVLRLSAAVWLRRHIFIAMIIARMIYKIIRCQTCRLAAKSIESSIDFAM
Ga0310697_101653661	3300032030	Rumen	STCFFLRLFFYNDYMMAKSRQAFRRAALLRSKTASLFCHIYIAMNIGRMIWRIIRCQTCRLAATSIEYSIDVASR
Ga0310697_105708421	3300032030	Rumen	CFDNEYRMAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0310697_108761472	3300032030	Rumen	MMAKSQRAFRRAALPRSKTARLFCHILIAMSIGRMIQRIIRCQTCRLAAKSIETSIDFAIRRS
Ga0310697_114313561	3300032030	Rumen	MAKSIKAFRRAALRRSKTALLFCPIFIAMSIGRMIHGIIRCQTRRLAAKSIESSIDFAIR
Ga0326512_112948271	3300032038	Rumen	MAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFANR
Ga0310690_112911901	3300033463	Rumen	MAKSQRVFRRAALRRSKTAVLFCQLFIAMSIGRMIQRIIRCQTCRLAAKTIECSIVFAIR
Ga0310690_113092053	3300033463	Rumen	MLSPALRYQRISYYNDYMMAKRRKAFRRAALRLSKTATLFCHIFIEMSIGRMIFQIIRCQTCRLAAKTIEDSIVFAIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093041

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences