3300010163: Cecal microbial community of the 13 lined ground squirrel in Duluth, Minnesota, USA. Combined Assembly of 10 SPs

Overview

Basic Information

• IMG/M Taxon OID: 3300010163
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121394 | Gp0154000 | Ga0136175
• Sample Name: Cecal microbial community of the 13 lined ground squirrel in Duluth, Minnesota, USA. Combined Assembly of 10 SPs
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Minnesota - Twin Cities
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1790662459
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. OF13-6	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ictidomys Tridecemlineatus (13 Lined Ground Squirrel) Cecal Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Ictidomys Tridecemlineatus Cecum → Ictidomys Tridecemlineatus (13 Lined Ground Squirrel) Cecal Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Duluth, Minnesota, USA
• Coordinates
  • Lat. (^o): 46.7867
  • Long. (^o): -92.100487
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F047755	Metagenome	149	Y
F066905	Metagenome	126	Y
F084822	Metagenome	112	Y
F093041	Metagenome / Metatranscriptome	106	Y
F100155	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136175_10000084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	188547
Ga0136175_10000426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	107710
Ga0136175_10007595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	24263
Ga0136175_10010258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	19516
Ga0136175_10026316	All Organisms → cellular organisms → Bacteria	9158
Ga0136175_10027253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8898
Ga0136175_10029770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	8271
Ga0136175_10030176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8185
Ga0136175_10050768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5217
Ga0136175_10094903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3061
Ga0136175_10111915	All Organisms → cellular organisms → Bacteria	2656
Ga0136175_10204845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. OF13-6	1577
Ga0136175_10225674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1449
Ga0136175_10472010	Not Available	754

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136175_10000084	Ga0136175_10000084114	F013656	MKKNYKEPIKSETETTINVLYSEKCLSIYTNKPELQKRLYKILGEPEKEYIKGRSITGSVWNVPLEEKAKISKLILKVNIFEL*
Ga0136175_10000426	Ga0136175_1000042644	F013656	MAKSYKEPIESEVETTINVIYSENILSVYTNKAALQKSLCKTLGKPTQEYRKGRSILASRWDISLDEKIKISQMMLKSDIFNLN*
Ga0136175_10007595	Ga0136175_1000759512	F066905	MQEEIRGCGCDCGNNCNNGGFLGNLFGGCGCGDNSILFFILIFLLLFTNCGCCNR*
Ga0136175_10010258	Ga0136175_100102586	F066905	MQEEVRNCGCGCNNNGGFLNNLFGGCGCGDSEILFFIIIFLLLFTNFGCGCGCGRSCN*
Ga0136175_10026316	Ga0136175_100263165	F013656	MKKIYKEANKSETETTINVLYKEQIISIYTNKVDLQKQLKKVLGEPKKEYIKGRSVIGSSWEIPFSEKSKISQMILKTNIYEL*
Ga0136175_10027253	Ga0136175_1002725316	F013656	MEKIYKEPNKSETETTINVLYNENILSIYTNKVNLQRQLNKLLGEPTKEYKIKRSIVGSIWEISLNDKTKIQRIILKANIYEL*
Ga0136175_10029770	Ga0136175_100297706	F100155	MTLQEMIYKRKSCRSFTNVPVEEDMIRIIRDFPLKPLYPDIQVRWDIVSRTEVKCICP*
Ga0136175_10030176	Ga0136175_100301761	F093041	MLGTHNDYMMAKRHKAFRRAALLLSRTAMLFCHIFIAMSIAQMILSIICCQTCRLA
Ga0136175_10050768	Ga0136175_100507684	F084822	MPKGSYEENAYKWFKRKGYASKYEYPGIYCIKIDNDIVYIGKSHNMLKRVA*
Ga0136175_10094903	Ga0136175_100949032	F013656	MAKTYKAPIETEEETTINVLYGENKLSIYTNNVTLQKQLGKILGKPKKEDKRGKSIVSSCWEVSLEEKIKISKMILKANIFQI*
Ga0136175_10111915	Ga0136175_101119153	F013656	MEKKIYKEPNKSETETTINVLYSENELSIYTNKVLLQKQLNKVLGEPTKEYKIKRSIVGSSWNVPLKEKSKISQMILKANIFEL*
Ga0136175_10204845	Ga0136175_102048452	F093041	VNPIDFYAYARYNDYMMANRHKAFRRAALLLSRTAKLLCHIFIAMSIAQMILSIICCQTCRLTAKAIEDSIAFAMR*
Ga0136175_10225674	Ga0136175_102256742	F047755	MENNKLKFLIDMINDMDIKNKLRLAICMSQSQWLGLIYNTKEKYEKFDNMLKSIDEEYRTTLINFGKYKLVMFALAKLMEMETTEQNKIAMYLFNNIN*
Ga0136175_10472010	Ga0136175_104720102	F066905	MQDERNCGCNNGPLGGLLNGCGCGCGDSQILFFIIIFLLLFTNCGCNGGRGCCN*