Metagenome / Metatranscriptome Family F092161

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092161
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	48 residues
Representative Sequence	AEGSTNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Number of Associated Samples	105
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.87 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.262 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.037 % of family members)
Environment Ontology (ENVO)	Unclassified (42.056 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.70% β-sheet: 0.00% Coil/Unstructured: 41.30%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02371	Transposase_20	66.36
PF13276	HTH_21	3.74
PF01548	DEDD_Tnp_IS110	0.93
PF13416	SBP_bac_8	0.93
PF01609	DDE_Tnp_1	0.93
PF05199	GMC_oxred_C	0.93
PF13683	rve_3	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	67.29
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.93
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.93
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.93
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.93
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.93
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.26 %
Unclassified	root	N/A	3.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.26 %
Unclassified	root	N/A	3.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.26 %
Unclassified	root	N/A	3.74 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.62 %
Unclassified	root	N/A	3.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.68 %
Unclassified	root	N/A	3.74 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.41 %
Unclassified	root	N/A	3.74 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	6.54 %
Unclassified	root	N/A	3.74 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.54 %
Unclassified	root	N/A	3.74 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.93 %
Roseibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.54 %
Unclassified	root	N/A	3.74 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Desulfatiglans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans	0.93 %
Roseibium aggregatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aggregatum	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.54 %
Unclassified	root	N/A	3.74 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Desulfatiglans anilini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	0.93 %
Roseibium aggregatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aggregatum	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000703\|JGI12416J11903_101682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aggregatum	744	Open in IMG/M
3300000905\|JGI12406J12870_102913	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300001089\|JGI12683J13190_1003662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1941	Open in IMG/M
3300001593\|JGI12635J15846_10108597	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300001620\|JGI20266J16349_10147	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300001622\|JGI20252J16333_100050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1837	Open in IMG/M
3300002245\|JGIcombinedJ26739_101578120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	553	Open in IMG/M
3300004152\|Ga0062386_100306078	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300004157\|Ga0062590_101263076	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300004267\|Ga0066396_10003074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1650	Open in IMG/M
3300004281\|Ga0066397_10172717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	508	Open in IMG/M
3300005176\|Ga0066679_10638961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300005179\|Ga0066684_10116612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1658	Open in IMG/M
3300005180\|Ga0066685_10064506	All Organisms → cellular organisms → Bacteria	2387	Open in IMG/M
3300005332\|Ga0066388_106243507	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005434\|Ga0070709_11229320	Not Available	603	Open in IMG/M
3300005435\|Ga0070714_101765614	Not Available	604	Open in IMG/M
3300005549\|Ga0070704_100182751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1679	Open in IMG/M
3300005556\|Ga0066707_10994821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	511	Open in IMG/M
3300005617\|Ga0068859_102123718	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005983\|Ga0081540_1115685	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300006032\|Ga0066696_11004538	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006354\|Ga0075021_11081243	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300006903\|Ga0075426_10476803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300009094\|Ga0111539_10905784	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300009143\|Ga0099792_10056174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1936	Open in IMG/M
3300012908\|Ga0157286_10009231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1881	Open in IMG/M
3300012911\|Ga0157301_10064868	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300012912\|Ga0157306_10061443	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300012927\|Ga0137416_10192127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1632	Open in IMG/M
3300012961\|Ga0164302_10509254	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300012986\|Ga0164304_10102126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1712	Open in IMG/M
3300013306\|Ga0163162_10860824	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300014497\|Ga0182008_10103704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300015077\|Ga0173483_10038754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1773	Open in IMG/M
3300017939\|Ga0187775_10149803	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300021088\|Ga0210404_10046971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2013	Open in IMG/M
3300021168\|Ga0210406_10206763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1626	Open in IMG/M
3300021181\|Ga0210388_10192216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1784	Open in IMG/M
3300021406\|Ga0210386_10191750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
3300021407\|Ga0210383_10285216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1419	Open in IMG/M
3300021420\|Ga0210394_10222804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1647	Open in IMG/M
3300021432\|Ga0210384_10648617	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300021474\|Ga0210390_11279507	Not Available	589	Open in IMG/M
3300021478\|Ga0210402_10130317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2279	Open in IMG/M
3300021559\|Ga0210409_11064719	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300022720\|Ga0242672_1091211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	583	Open in IMG/M
3300022726\|Ga0242654_10038999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1287	Open in IMG/M
3300025899\|Ga0207642_10929994	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300026355\|Ga0257149_1049373	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300026810\|Ga0207801_101425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1764	Open in IMG/M
3300026819\|Ga0207765_105413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1144	Open in IMG/M
3300026823\|Ga0207759_102143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1741	Open in IMG/M
3300026824\|Ga0207723_102242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1689	Open in IMG/M
3300026831\|Ga0207738_103421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1696	Open in IMG/M
3300026833\|Ga0207728_102859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1831	Open in IMG/M
3300026854\|Ga0207727_101490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2733	Open in IMG/M
3300026859\|Ga0207859_1002783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1680	Open in IMG/M
3300026866\|Ga0207786_102527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1722	Open in IMG/M
3300026876\|Ga0207837_1003503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1563	Open in IMG/M
3300026880\|Ga0209623_1000289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2037	Open in IMG/M
3300026887\|Ga0207805_1004487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1578	Open in IMG/M
3300026895\|Ga0207758_1003514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1740	Open in IMG/M
3300026898\|Ga0207788_1002539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1970	Open in IMG/M
3300026910\|Ga0207840_1003817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1745	Open in IMG/M
3300026927\|Ga0207744_1005895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1276	Open in IMG/M
3300026959\|Ga0207852_1003928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1743	Open in IMG/M
3300026990\|Ga0207824_1003966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1740	Open in IMG/M
3300027000\|Ga0207803_1006977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1690	Open in IMG/M
3300027099\|Ga0208726_100157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1735	Open in IMG/M
3300027105\|Ga0207944_1000423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2798	Open in IMG/M
3300027161\|Ga0208368_100022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3387	Open in IMG/M
3300027174\|Ga0207948_1050019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	506	Open in IMG/M
3300027326\|Ga0209731_1004334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1719	Open in IMG/M
3300027371\|Ga0209418_1006096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1742	Open in IMG/M
3300027521\|Ga0209524_1012546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1708	Open in IMG/M
3300027565\|Ga0209219_1019333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1658	Open in IMG/M
3300027603\|Ga0209331_1158667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	533	Open in IMG/M
3300027765\|Ga0209073_10094462	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300030916\|Ga0075386_10046980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1446	Open in IMG/M
3300031122\|Ga0170822_11983571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	618	Open in IMG/M
3300031231\|Ga0170824_108796290	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031446\|Ga0170820_13129082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1955	Open in IMG/M
3300031474\|Ga0170818_109196863	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300031543\|Ga0318516_10161453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300031544\|Ga0318534_10252483	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300031720\|Ga0307469_10252381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300031754\|Ga0307475_10513584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	962	Open in IMG/M
3300031770\|Ga0318521_10166394	Not Available	1259	Open in IMG/M
3300031770\|Ga0318521_10174127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1232	Open in IMG/M
3300031833\|Ga0310917_10859943	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031833\|Ga0310917_11015892	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300031845\|Ga0318511_10576765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	523	Open in IMG/M
3300031879\|Ga0306919_11304621	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031945\|Ga0310913_11256021	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031959\|Ga0318530_10126902	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031981\|Ga0318531_10093732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M
3300032035\|Ga0310911_10140983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1351	Open in IMG/M
3300032044\|Ga0318558_10484005	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300032059\|Ga0318533_11443437	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300032063\|Ga0318504_10050006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1752	Open in IMG/M
3300032076\|Ga0306924_11040106	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300032094\|Ga0318540_10311642	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300032174\|Ga0307470_11031830	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300032783\|Ga0335079_10337688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1636	Open in IMG/M
3300032892\|Ga0335081_10379694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1827	Open in IMG/M
3300033289\|Ga0310914_10611191	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.46%
Host-Associated	Host-Associated	6.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.59%
Plants	Host-Associated → Plants	6.54%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.47%
Loam	Environmental → Terrestrial → Soil → Loam	38.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	35.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	21.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14	Environmental	Open in IMG/M
3300000905	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42	Environmental	Open in IMG/M
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001620	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032	Environmental	Open in IMG/M
3300001622	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026810	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 (SPAdes)	Environmental	Open in IMG/M
3300026819	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)	Environmental	Open in IMG/M
3300026823	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300026831	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 9 (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300026866	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76 (SPAdes)	Environmental	Open in IMG/M
3300026876	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58 (SPAdes)	Environmental	Open in IMG/M
3300026880	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300026887	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes)	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300027161	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12416J11903_1016821	3300000703	Tropical Forest Soil	LLERAASVFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
JGI12406J12870_1029132	3300000905	Tropical Forest Soil	LLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA*
JGI12683J13190_10036621	3300001089	Forest Soil	GAAAEDRASAAQVDVLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
JGI12635J15846_101085971	3300001593	Forest Soil	GGGAAAEDRASAAQVDVLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
JGI20266J16349_101472	3300001620	Forest Soil	QVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
JGI20252J16333_1000501	3300001622	Forest Soil	AAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
JGIcombinedJ26739_1015781201	3300002245	Forest Soil	EDRASAAQVDVLYRQIGQLKVEXDLYEGLGVKGDVVLLCTAMTAAS*
Ga0062386_1003060782	3300004152	Bog Forest Soil	VVCESGVDVLYRQIGKLKVENDLYEGFPVKRDVAVLCAAITAT
Ga0062590_1012630761	3300004157	Soil	EVQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0066396_100030742	3300004267	Tropical Forest Soil	EAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0066397_101727172	3300004281	Tropical Forest Soil	TNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0066679_106389613	3300005176	Soil	ATNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0066684_101166122	3300005179	Soil	PAEGATNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0066685_100645064	3300005180	Soil	EGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
Ga0066388_1062435071	3300005332	Tropical Forest Soil	LDGARSVFEGGSGAAEDTASAAQVDVLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
Ga0070709_112293201	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LRDSAACVFEGQRGEGVASEAQVDLLYRENDQLKVEHDLYEGLGVERDVVLVRAAMTAA*
Ga0070714_1017656142	3300005435	Agricultural Soil	VASEAQVDLLYRENDQLKVEHDLYEGLGVERDVVLVRAAMTAA*
Ga0070704_1001827511	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AEGATNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVALGRAAMTAA*
Ga0066707_109948212	3300005556	Soil	EGGGAAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
Ga0068859_1021237181	3300005617	Switchgrass Rhizosphere	LYRQIGQLKVENDLYEGLGVKRDVALARAAMTAA*
Ga0081540_11156852	3300005983	Tabebuia Heterophylla Rhizosphere	INEAQVDLLYRQIAQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0066696_110045382	3300006032	Soil	VDVLYRQIGQLKVENDLYEGLGVKRDAVLLCAATTAAL*
Ga0075021_110812432	3300006354	Watersheds	AQVDVLYRQIGQLKVENDLYEGLGVKQDVVLLCAAMTAAL*
Ga0075426_104768032	3300006903	Populus Rhizosphere	NEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0111539_109057842	3300009094	Populus Rhizosphere	AEDTASAAQVDVLYRQIGQLKVENDLYEGLGVKQDTVLLCAAMTAAL*
Ga0099792_100561743	3300009143	Vadose Zone Soil	GVASEDTASAAQVDLLYRRIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0157286_100092313	3300012908	Soil	AVSVFEGGASTEAATNEVQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0157301_100648682	3300012911	Soil	PAEGTTNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0157306_100614431	3300012912	Soil	TEAATNEVQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0137416_101921271	3300012927	Vadose Zone Soil	GGAPAESLASEAQVDVLYQQIGRLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0164302_105092541	3300012961	Soil	LAEGAASEAQVDVLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
Ga0164304_101021263	3300012986	Soil	AGVDVLYRQIGQLKVENDLYEGVGVKRDVVLARAAMTAA*
Ga0163162_108608241	3300013306	Switchgrass Rhizosphere	GAAGVFEGGAGASEDTASTAQVDLLYRQIGQLKVENDLYEGLGVKRDVALARAAMTAA*
Ga0182008_101037042	3300014497	Rhizosphere	GASTEAATNEVQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAA*
Ga0173483_100387543	3300015077	Soil	VSVFEGGASTEAATNEVQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA*
Ga0187775_101498031	3300017939	Tropical Peatland	QVDVLYRQIGQLKVENDLYEGLGVKQDTALLCAAMTAAAL
Ga0210404_100469713	3300021088	Soil	PASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210406_102067631	3300021168	Soil	AVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210388_101922163	3300021181	Soil	GGSASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210386_101917501	3300021406	Soil	FEGGGAAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210383_102852162	3300021407	Soil	AAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210394_102228042	3300021420	Soil	VEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210384_106486172	3300021432	Soil	VLYRQIGQLKVENDLYEGLGVNRDVVLARAAMTAA
Ga0210390_112795072	3300021474	Soil	VFETGASAEATINEAQVDLLYRQIGQLKVENDLYEGLGVKRNVVLARGNDSRVGRNI
Ga0210402_101303173	3300021478	Soil	VDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0210409_110647191	3300021559	Soil	ASVFEGGGAAGEDVASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLARQ
Ga0242672_10912112	3300022720	Soil	LDGATSVFEGGGAVAEDTASAAQVDVLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAA
Ga0242654_100389991	3300022726	Soil	LLDGATSVFEGGGAAAEDRASAAQVDVLSRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0207642_109299942	3300025899	Miscanthus Rhizosphere	GASAEGAANEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLSAAMTAAL
Ga0257149_10493732	3300026355	Soil	VDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0207801_1014251	3300026810	Tropical Forest Soil	EAGASAEATINEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207765_1054131	3300026819	Tropical Forest Soil	SAEATINEAQVDLLYRQIGQLKVANDLYEGLGVKREVVLARAAMTAA
Ga0207759_1021432	3300026823	Tropical Forest Soil	RAASVFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207723_1022423	3300026824	Tropical Forest Soil	DLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207738_1034212	3300026831	Tropical Forest Soil	FEAGASAEATINEAQVDLLYRQIGQLKVANDLYEGLGVKREVVLARAAMTAA
Ga0207728_1028593	3300026833	Tropical Forest Soil	VFEAGALAEATINEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207727_1014903	3300026854	Tropical Forest Soil	VNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207859_10027831	3300026859	Tropical Forest Soil	EATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207786_1025273	3300026866	Tropical Forest Soil	AEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207837_10035031	3300026876	Tropical Forest Soil	ASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0209623_10002893	3300026880	Forest Soil	AAAEDRASAAQVDVLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0207805_10044871	3300026887	Tropical Forest Soil	EAGALAEATINEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207758_10035141	3300026895	Tropical Forest Soil	SAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207788_10025393	3300026898	Tropical Forest Soil	EAGASAEATINEAQVDLLYRQIGQLKVANDLYEGLGVKREVVLARAAMTAA
Ga0207840_10038171	3300026910	Tropical Forest Soil	EAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207744_10058951	3300026927	Tropical Forest Soil	ASVFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207852_10039283	3300026959	Tropical Forest Soil	LLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0207824_10039662	3300026990	Tropical Forest Soil	AEATINEAQVDLLYRQIGQLKVANDLYEGLGVKREVVLARAAMTAA
Ga0207803_10069772	3300027000	Tropical Forest Soil	AGASAEATINEAQVDLLYRQIGQLKVANDLYEGLGVKREVVLARAAMTAA
Ga0208726_1001571	3300027099	Forest Soil	EGGGAAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0207944_10004231	3300027105	Forest Soil	GGAAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0208368_1000223	3300027161	Forest Soil	QVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0207948_10500191	3300027174	Forest Soil	SVFEGASAEGGTNEAQVDLLCRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0209731_10043342	3300027326	Forest Soil	VGATNEAQVDFLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0209418_10060961	3300027371	Forest Soil	VFEGGVPAVGATNEAQVDFLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0209524_10125461	3300027521	Forest Soil	VFEGGSVAEGTANEAQVDVLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0209219_10193331	3300027565	Forest Soil	ASAAQVDVLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0209331_11586672	3300027603	Forest Soil	SAAQVDVLYRQIGQLKVENDLYEGLGVKGDVVLLCTAMTAAS
Ga0209073_100944621	3300027765	Agricultural Soil	NEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0075386_100469802	3300030916	Soil	DGARSVFEGGGAVAEDTASAAQVDVLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0170822_119835711	3300031122	Forest Soil	MLSKLDQFGGTSDLEDTASAAQVDVLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0170824_1087962902	3300031231	Forest Soil	EDTASAAQVDVLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0170820_131290821	3300031446	Forest Soil	EGGGTAVEGVAGAAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0170818_1091968632	3300031474	Forest Soil	EGGGTAVEGVAGAAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0318516_101614531	3300031543	Soil	VFEGGAPAEGSTNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0318534_102524831	3300031544	Soil	FEGGTSAEGAANEARVDLLYRQIGQLKVENDLYEGFGVKRDVVLARAAMTAA
Ga0307469_102523812	3300031720	Hardwood Forest Soil	TASAAQVDVLYRQIGQLKVENDLYEGLGVKRDMVLARAAMTAA
Ga0307475_105135841	3300031754	Hardwood Forest Soil	ASVFEGGSAASEDTASAAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0318521_101663941	3300031770	Soil	VLYRQIGQLKVENDLYEGRGVKQDAVLLCAAMTAAL
Ga0318521_101741272	3300031770	Soil	AEGAANEARVDLLYRQIGQLKVENDLYEGFGVKRDVVLARAAMTAA
Ga0310917_108599432	3300031833	Soil	VFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLSVKRDWFWCARE
Ga0310917_110158921	3300031833	Soil	AASVFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
Ga0318511_105767652	3300031845	Soil	VSVFEGGASAEGATNEAQVDLLYRQIGQLKVENDLYEGLGVNHDAVLLYAAMTAAL
Ga0306919_113046212	3300031879	Soil	VSVFEGDAPAEGSTNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0310913_112560212	3300031945	Soil	AANEARDDLLYRQIGQLKVENDLYEGFGVKRDVVLARAAMTAA
Ga0318530_101269022	3300031959	Soil	VSVFEGGMPAEGATNEAQVDLLYRQIGQLKAENDLYEGLGVKQDAVLRCAAMTAAL
Ga0318531_100937321	3300031981	Soil	GAPAEGSTNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0310911_101409832	3300032035	Soil	VFEGGMPAEGATNEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLRCAAMTAAL
Ga0318558_104840051	3300032044	Soil	LEGAVSVFEGGAPGEGASNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0318533_114434372	3300032059	Soil	ARVDLLYRQIGQLKVENDLYEGFGVKRDVVLARAAMTAA
Ga0318504_100500063	3300032063	Soil	GEGASNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0306924_110401062	3300032076	Soil	DLLYRQIGQLKVENDLYEGLGVKQDAVLRCAAMTAAL
Ga0318540_103116422	3300032094	Soil	AEGSTNEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0307470_110318301	3300032174	Hardwood Forest Soil	ASVFEGGGAAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLL
Ga0335079_103376881	3300032783	Soil	EAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0335081_103796942	3300032892	Soil	GASADGAINEAQVDLLYRQIGQLKVENDLYEGLGVKRDVVLARAAMTAA
Ga0310914_106111912	3300033289	Soil	GAASVFEGGTSAEGAANEARVDLLYRQIGQLKVENDLYEGFGVKRDVVLARAAMTAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092161

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences