Sample 3300000703

Overview

Basic Information
IMG/M Taxon OID	3300000703 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054716 \| Ga0001937
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9980880
Sequencing Scaffolds	16
Novel Protein Genes	16
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aggregatum	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Kamptonema → Kamptonema sp. PCC 6506	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F012657	Metagenome	278	Y
F036895	Metagenome / Metatranscriptome	169	Y
F047205	Metagenome / Metatranscriptome	150	Y
F054504	Metagenome	139	N
F063348	Metagenome	129	N
F074315	Metagenome	119	N
F078037	Metagenome	116	N
F083188	Metagenome / Metatranscriptome	113	Y
F084748	Metagenome	112	Y
F091102	Metagenome	107	N
F092161	Metagenome / Metatranscriptome	107	N
F104209	Metagenome	100	N
F104533	Metagenome	100	Y
F105825	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F012657

Metagenome

278

F036895

Metagenome / Metatranscriptome

169

F047205

Metagenome / Metatranscriptome

150

F054504

Metagenome

139

F063348

Metagenome

129

F074315

Metagenome

119

F078037

Metagenome

116

F083188

Metagenome / Metatranscriptome

113

F084748

Metagenome

112

F091102

Metagenome

107

F092161

Metagenome / Metatranscriptome

107

F104209

Metagenome

100

F104533

Metagenome

100

F105825

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
JGI12416J11903_100405	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
JGI12416J11903_100894	Not Available	989	Open in IMG/M
JGI12416J11903_101170	Not Available	875	Open in IMG/M
JGI12416J11903_101682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aggregatum	744	Open in IMG/M
JGI12416J11903_101977	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
JGI12416J11903_102060	Not Available	675	Open in IMG/M
JGI12416J11903_102245	Not Available	648	Open in IMG/M
JGI12416J11903_102543	Not Available	613	Open in IMG/M
JGI12416J11903_102683	Not Available	597	Open in IMG/M
JGI12416J11903_102714	Not Available	594	Open in IMG/M
JGI12416J11903_103006	Not Available	569	Open in IMG/M
JGI12416J11903_103088	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
JGI12416J11903_103141	Not Available	557	Open in IMG/M
JGI12416J11903_103242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	549	Open in IMG/M
JGI12416J11903_103734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
JGI12416J11903_103936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Kamptonema → Kamptonema sp. PCC 6506	503	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12416J11903_100405

All Organisms → cellular organisms → Bacteria

1378

Open in IMG/M

JGI12416J11903_100894

Not Available

989

Open in IMG/M

JGI12416J11903_101170

Not Available

875

Open in IMG/M

JGI12416J11903_101682

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aggregatum

744

Open in IMG/M

JGI12416J11903_101977

All Organisms → cellular organisms → Bacteria

687

Open in IMG/M

JGI12416J11903_102060

Not Available

675

Open in IMG/M

JGI12416J11903_102245

Not Available

648

Open in IMG/M

JGI12416J11903_102543

Not Available

613

Open in IMG/M

JGI12416J11903_102683

Not Available

597

Open in IMG/M

JGI12416J11903_102714

Not Available

594

Open in IMG/M

JGI12416J11903_103006

Not Available

569

Open in IMG/M

JGI12416J11903_103088

All Organisms → cellular organisms → Bacteria → Acidobacteria

561

Open in IMG/M

JGI12416J11903_103141

Not Available

557

Open in IMG/M

JGI12416J11903_103242

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium

549

Open in IMG/M

JGI12416J11903_103734

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

516

Open in IMG/M

JGI12416J11903_103936

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Kamptonema → Kamptonema sp. PCC 6506

503

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12416J11903_100405	JGI12416J11903_1004052	F104209	HADERTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12416J11903_100894	JGI12416J11903_1008941	F091102	FPKAAKNFHSVETFFPRPGPAPRSSLESKADSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGTMHDENDPTSALLIVVPEGSYLFDYYVAVCRAXTHEEPYLPQKH*
JGI12416J11903_101170	JGI12416J11903_1011701	F074315	METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDM
JGI12416J11903_101682	JGI12416J11903_1016821	F092161	LLERAASVFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA
JGI12416J11903_101977	JGI12416J11903_1019771	F105825	RNARARFVSSGVVANHMKEIEFSKAFIVRDPDGHPVEIAAQ*
JGI12416J11903_102060	JGI12416J11903_1020601	F012657	NQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12416J11903_102245	JGI12416J11903_1022451	F078037	MDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYXETIKLGDQMDQAEQNNDSDKAEGLSKKMDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK*
JGI12416J11903_102543	JGI12416J11903_1025431	F012657	LHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG
JGI12416J11903_102683	JGI12416J11903_1026832	F036895	LLRGRYSASSLIRTHPPPSRRQSLSRLSRLYDLPCSGDFSPGRGGLLQLLGMSLPPCCRFHPAEVMVPCRSDFGTPCCLHPTVAGSALGATHFRGHMHVHCCYGPVTRDPPAGDRVDRFQDFGFPPPCYPNYRAPDSCPGRSTSC*
JGI12416J11903_102714	JGI12416J11903_1027141	F078037	VLLSWLPPLAILVTAAMASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLDLARTLAALDKLCK*
JGI12416J11903_103006	JGI12416J11903_1030062	F083188	MAFCEGVPKRLFATSIAIAIAVCMMGALAAAQTTLQPRAEIFGGYSWLNPDGYVDWGKVNSIAHGWNAS
JGI12416J11903_103088	JGI12416J11903_1030881	F054504	SKQIAPSADDGFQEGQRADCRKNITIGGLKGEKLVLGTPKWAADWIEKNQKHMLDVCFSDTPMPGARNYLIVFYTSAPASNGPDAANAASLAVLAPQSASPAAGVGTFTTSYGSTWHYFVDRNIGVTVNSSLDADQPQSQPDKVSYATAYTEEGVPVAQHWQGAPKKQIKLNPEDPNVRKESKKERH
JGI12416J11903_103141	JGI12416J11903_1031411	F063348	GAPAPAGFSIPSMTGFDQTVRLPDRQAVPSVNXKKAEIEDLAFRFRDEVKAEILQHRGSNAVGVVGSFVVNIEAHRARYAKKLDAIRAGADATTVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILPMRGQISDDVSV
JGI12416J11903_103242	JGI12416J11903_1032422	F084748	MTQRADLPDLDTLNPGALKALIVAQHEQLLQKDDQLLSKDEQLASRDEE
JGI12416J11903_103734	JGI12416J11903_1037341	F104533	NCERPDIRYTRSNPLIPIRPRSRVARYIRTQVLVYESDVVRGNIIYGAFDLFRMGIHSLRHRHDPNGGEYDDGLPLSPVSPETLFPQNQPGEIPLTR*
JGI12416J11903_103936	JGI12416J11903_1039361	F047205	MKTHTGKDATAAYSPTKGHSVVIYTHKFKPEHFRKGAEIVTKQFPDAQAQSKTPQKRLNIFLRRPSTHEIVNVSFFDAGPGVHDWHESEGRLKTVERLQDMLEKPIDVQVFEVD

Scaffold ID

Protein ID

Family

Sequence

JGI12416J11903_100405

JGI12416J11903_1004052

F104209

HADERTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*

JGI12416J11903_100894

JGI12416J11903_1008941

F091102

FPKAAKNFHSVETFFPRPGPAPRSSLESKADSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGTMHDENDPTSALLIVVPEGSYLFDYYVAVCRAXTHEEPYLPQKH*

JGI12416J11903_101170

JGI12416J11903_1011701

F074315

METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDM

JGI12416J11903_101682

JGI12416J11903_1016821

F092161

LLERAASVFEAGASAEATVNEAQVDLLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA

JGI12416J11903_101977

JGI12416J11903_1019771

F105825

RNARARFVSSGVVANHMKEIEFSKAFIVRDPDGHPVEIAAQ*

JGI12416J11903_102060

JGI12416J11903_1020601

F012657

NQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*

JGI12416J11903_102245

JGI12416J11903_1022451

F078037

MDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYXETIKLGDQMDQAEQNNDSDKAEGLSKKMDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK*

JGI12416J11903_102543

JGI12416J11903_1025431

F012657

LHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG

JGI12416J11903_102683

JGI12416J11903_1026832

F036895

LLRGRYSASSLIRTHPPPSRRQSLSRLSRLYDLPCSGDFSPGRGGLLQLLGMSLPPCCRFHPAEVMVPCRSDFGTPCCLHPTVAGSALGATHFRGHMHVHCCYGPVTRDPPAGDRVDRFQDFGFPPPCYPNYRAPDSCPGRSTSC*

JGI12416J11903_102714

JGI12416J11903_1027141

F078037

VLLSWLPPLAILVTAAMASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLDLARTLAALDKLCK*

JGI12416J11903_103006

JGI12416J11903_1030062

F083188

MAFCEGVPKRLFATSIAIAIAVCMMGALAAAQTTLQPRAEIFGGYSWLNPDGYVDWGKVNSIAHGWNAS

JGI12416J11903_103088

JGI12416J11903_1030881

F054504

SKQIAPSADDGFQEGQRADCRKNITIGGLKGEKLVLGTPKWAADWIEKNQKHMLDVCFSDTPMPGARNYLIVFYTSAPASNGPDAANAASLAVLAPQSASPAAGVGTFTTSYGSTWHYFVDRNIGVTVNSSLDADQPQSQPDKVSYATAYTEEGVPVAQHWQGAPKKQIKLNPEDPNVRKESKKERH

JGI12416J11903_103141

JGI12416J11903_1031411

F063348

GAPAPAGFSIPSMTGFDQTVRLPDRQAVPSVNXKKAEIEDLAFRFRDEVKAEILQHRGSNAVGVVGSFVVNIEAHRARYAKKLDAIRAGADATTVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILPMRGQISDDVSV

JGI12416J11903_103242

JGI12416J11903_1032422

F084748

MTQRADLPDLDTLNPGALKALIVAQHEQLLQKDDQLLSKDEQLASRDEE

JGI12416J11903_103734

JGI12416J11903_1037341

F104533

NCERPDIRYTRSNPLIPIRPRSRVARYIRTQVLVYESDVVRGNIIYGAFDLFRMGIHSLRHRHDPNGGEYDDGLPLSPVSPETLFPQNQPGEIPLTR*

JGI12416J11903_103936

JGI12416J11903_1039361

F047205

MKTHTGKDATAAYSPTKGHSVVIYTHKFKPEHFRKGAEIVTKQFPDAQAQSKTPQKRLNIFLRRPSTHEIVNVSFFDAGPGVHDWHESEGRLKTVERLQDMLEKPIDVQVFEVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000703: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences