Sample 3300000905

Basic Information
IMG/M Taxon OID	3300000905 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054647 \| Ga0001965
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300000905 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0075432 | Gp0054647 | Ga0001965

Sample Name

Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	17704443
Sequencing Scaffolds	26
Novel Protein Genes	26
Associated Families	24

Dataset Contents

Total Genome Size

17704443

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria	7
Not Available	13
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Ecosystem Assignment (GOLD)

Name

Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → tropical forest → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Location Information

Location

Luquillo Experimental Forest Soil, Puerto Rico

Coordinates

Lat. (^o)

18.0

Long. (^o)

-65.0

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004124	Metagenome / Metatranscriptome	452	Y
F005929	Metagenome / Metatranscriptome	386	Y
F007494	Metagenome / Metatranscriptome	350	Y
F010721	Metagenome / Metatranscriptome	300	Y
F011109	Metagenome / Metatranscriptome	295	Y
F011271	Metagenome	292	Y
F012657	Metagenome	278	Y
F015573	Metagenome	253	Y
F016180	Metagenome / Metatranscriptome	249	Y
F019273	Metagenome	230	Y
F023701	Metagenome / Metatranscriptome	209	Y
F040358	Metagenome / Metatranscriptome	162	N
F045461	Metagenome	152	N
F047330	Metagenome	150	Y
F050785	Metagenome / Metatranscriptome	145	Y
F057789	Metagenome	135	N
F062933	Metagenome / Metatranscriptome	130	Y
F063348	Metagenome	129	N
F064047	Metagenome / Metatranscriptome	129	Y
F066972	Metagenome / Metatranscriptome	126	Y
F086229	Metagenome / Metatranscriptome	111	Y
F091903	Metagenome	107	N
F092161	Metagenome / Metatranscriptome	107	N
F104209	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI12406J12870_100048	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2872	Open in IMG/M
JGI12406J12870_100053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2763	Open in IMG/M
JGI12406J12870_100074	All Organisms → cellular organisms → Bacteria	2508	Open in IMG/M
JGI12406J12870_100137	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
JGI12406J12870_100963	Not Available	1115	Open in IMG/M
JGI12406J12870_101218	Not Available	999	Open in IMG/M
JGI12406J12870_101286	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
JGI12406J12870_101907	Not Available	827	Open in IMG/M
JGI12406J12870_101929	Not Available	821	Open in IMG/M
JGI12406J12870_101984	Not Available	812	Open in IMG/M
JGI12406J12870_102275	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
JGI12406J12870_102525	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
JGI12406J12870_102537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	733	Open in IMG/M
JGI12406J12870_102591	Not Available	728	Open in IMG/M
JGI12406J12870_102913	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
JGI12406J12870_103394	Not Available	651	Open in IMG/M
JGI12406J12870_104211	Not Available	595	Open in IMG/M
JGI12406J12870_104301	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
JGI12406J12870_104887	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
JGI12406J12870_105097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	553	Open in IMG/M
JGI12406J12870_105702	Not Available	526	Open in IMG/M
JGI12406J12870_105721	Not Available	525	Open in IMG/M
JGI12406J12870_105969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
JGI12406J12870_106193	Not Available	509	Open in IMG/M
JGI12406J12870_106369	Not Available	504	Open in IMG/M
JGI12406J12870_106380	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12406J12870_100048	JGI12406J12870_1000483	F015573	VAETESPPQDELHNPAVYLERIAREXKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKESDNEAGKSNEGRSGS*
JGI12406J12870_100053	JGI12406J12870_1000532	F016180	VRKKYQRKVCKSNHKFEIVQGQELLVRVPLPMAEVWAEMQARVEELTGQAGLQIL
JGI12406J12870_100074	JGI12406J12870_1000741	F104209	STRRQERRNGHGGAGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12406J12870_100137	JGI12406J12870_1001376	F057789	MSETALQFTGTDLRGLLDVLLEALKVIRRTGRRPTITVNGKLYASHDLRKVAALLPDEELQPHHQALVNVMFAKKQRGYRKTAYNLADRVNSWRTEEQKLAARQAAKTSALAVAEPAPFRNRGFSERTIRALMDCSIDEPERLLFMQSADLKKIPGVGKASFDEIMRYRAKFIRSSVMKKNP*
JGI12406J12870_100963	JGI12406J12870_1009632	F062933	MHLVSKIGIAIFAAAAVAAVIVDTMRPIAARRLFALVAALIAGVTAFYLVPEPLPELTRAEFMXEVRAGHVRRVEIXDQXVXIXESSTRGEFRTEFDRYKDVDLPAELRALGIEVLFSTSPPGI*
JGI12406J12870_101218	JGI12406J12870_1012181	F012657	FKKKRRLRTSPVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*
JGI12406J12870_101286	JGI12406J12870_1012862	F045461	VRQPTAPHSEFSLRSMLFGAVFIIMFVAAVIIDLAALLXFSGLVNGLPANILEMAGVLTGLTIFPLLVMGMSVSVDLNHK*
JGI12406J12870_101907	JGI12406J12870_1019071	F012657	MIATAWLKNIEKKRLLSASPDMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12406J12870_101929	JGI12406J12870_1019291	F005929	MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRRIVEDLRQRSVDVYLAAKTPEAESDSKKFREASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYRYF*
JGI12406J12870_101984	JGI12406J12870_1019842	F019273	MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGYH
JGI12406J12870_102275	JGI12406J12870_1022751	F091903	MGHRDKKRHPGWLQPRWERQKRDTAARVEAAVRALQKDHAEVTYASICKRVSILFGLSISPNTIKRNELSYRIYMASRRPPRRKQLRESVLMQLINSASGPEKRSMWSKTARLRRESKDALIARLISLE
JGI12406J12870_102525	JGI12406J12870_1025251	F010721	VYIDTPKGRLSAGFTVPGTADAADVAMQLRERGWAPYKLRLDLEQHAWIAVVIDWKRAA*
JGI12406J12870_102537	JGI12406J12870_1025372	F086229	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWL
JGI12406J12870_102591	JGI12406J12870_1025911	F023701	MRELMGKIPTKDPNITDVVYLSEIVRCLECQKTVPMGIEVVTVKKGGGARKVLRRVCYCRAHGFDYETRVQSLPIHPRAH*
JGI12406J12870_102913	JGI12406J12870_1029132	F092161	LLYRQIGQLKVENDLYEGLGVKREVVLARAAMTAA*
JGI12406J12870_103394	JGI12406J12870_1033941	F063348	CAQERKTIVNVKKAEIEDLAFRFRDEVKAEILQHRGSNAIGVVGSFVVNIEAHRARYAKKLEAIRAGADAATVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILPMRGQISDDDVSVAVHRALSDIIRNSAVWKEWNQNSPPTLQDGQVSDAA*
JGI12406J12870_104211	JGI12406J12870_1042111	F040358	MRIAIXALAVLAGGGAAEAGQIEVISASPRHIEIAAWCWTAGSNCQQEASDVAQGYCHGSDYPDYPRRALYVRSGLVERGFFSERVIFVYRCNRRSIICEAGSC*
JGI12406J12870_104301	JGI12406J12870_1043011	F011109	VNSSSTAKTILFWISIVFLGVMLWKLVSTNGATARESTPSYSDFVVSVEQGDVKEVTMYLSPNSYELQGEYLKPANQKFRLIIPKENAPELTKLLREKAVMISV
JGI12406J12870_104887	JGI12406J12870_1048872	F007494	MKESLRVSVGAVVLALATLAAVIFAWLNFLQRSRYDLVDD
JGI12406J12870_105097	JGI12406J12870_1050971	F066972	VSSAILIFFAILAFATTPAHAQGTWLETRMIRAICSSEATPVANTDRLARRLNLTDPQKAALKDLTERFCVCR
JGI12406J12870_105702	JGI12406J12870_1057021	F050785	DMLILVRRSQICNSRIVSALPSCGRLPATVPDLTNRARQLVFLTPINSQLNDFLNEIHQIARLEPSIVDRIDEDLDLHAKKKKLQRLIDAQFLAGQTPDLPKLQLQLRELKLDNIDLEIGRPRTEAYIVYLFLMLRGLIGGCKDQHGRLFLEESITLKLWLNHLGLELPPASTLS
JGI12406J12870_105721	JGI12406J12870_1057212	F064047	MTLKKSSRAGLLALAFGVLLGLFLSVASFDASYAQTPAAPAAAPA
JGI12406J12870_105969	JGI12406J12870_1059692	F047330	HAKIAVADKALLNFCAKFNKLPSKIGADDIEVLRTYGFGEQHILEAIVTVGFAQFANTVAFGLGTVPDFHNRRIQEELGKARAVELGVHVPAAG*
JGI12406J12870_106193	JGI12406J12870_1061932	F004124	PSGGAVLRRERWVWQDGGVKRQPSQTRPTGRHLTPQEKADLLKAQRRSGLSLLAFARKEGLCYASLLRWRCRQGNGTHMMAPPQPEGGPGFVPVSIEAEVVGGDYILSWPSGRSLKIPRHFELDSLRRLLSVLEEVR*
JGI12406J12870_106369	JGI12406J12870_1063691	F011271	PVKAVIGTSAVTAIVFLPGAKCLAAGTKHMRRNRTRSVGRRSRIDFQLEPKERQALKLAEIREALVAAGYNTTAKQAAVLGIGRSTAWWLLNHNKRAGPSAKVIKRILLSPQIPKRVRRKVEQYVEEKVRGVYGHSEQRTQWFSEQFQRSPNS*
JGI12406J12870_106380	JGI12406J12870_1063801	F062933	MRHIAARHVFALLVALIVGVTVFYRLPEPLPELTRAEFMAEVRAGHVRRIEIEDQEVIIAESSTRGEFRTGFDRKVDVNLPAELRALGVEVYFSKSPLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000905: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences