3300001622: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018

Overview

Basic Information

• IMG/M Taxon OID: 3300001622
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057299 | Ga0003857
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6025796
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.17263
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000079	Metagenome / Metatranscriptome	2532	Y
F023803	Metagenome / Metatranscriptome	208	Y
F032451	Metagenome / Metatranscriptome	180	Y
F038357	Metagenome / Metatranscriptome	166	Y
F053458	Metagenome / Metatranscriptome	141	Y
F067238	Metagenome / Metatranscriptome	126	Y
F069298	Metagenome / Metatranscriptome	124	Y
F092161	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20252J16333_100008	Not Available	2663
JGI20252J16333_100050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1837
JGI20252J16333_100118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1522
JGI20252J16333_100120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1512
JGI20252J16333_100248	Not Available	1157
JGI20252J16333_100351	Not Available	949
JGI20252J16333_100544	All Organisms → cellular organisms → Bacteria	773

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20252J16333_100008	JGI20252J16333_1000081	F023803	RREPLFMLRVFGRLPVTDSATRSRAGVRKASGEETAGEFAPAVVSVYGDLAPM*
JGI20252J16333_100050	JGI20252J16333_1000501	F092161	AAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
JGI20252J16333_100118	JGI20252J16333_1001182	F053458	KVVHFLAILDYGRPRDLASEADGENSETMSATLGCILLPGFSAGTDGARHFR*
JGI20252J16333_100120	JGI20252J16333_1001202	F038357	MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGLTAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGEPPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAAAVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV*
JGI20252J16333_100248	JGI20252J16333_1002482	F069298	MTRLVSEHDPSHSVAARNGCTNIPLAAVGAQEDETFLKTGFLGHVRMRFVHLDPPGLIKSWKI*
JGI20252J16333_100351	JGI20252J16333_1003512	F067238	RKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
JGI20252J16333_100544	JGI20252J16333_1005441	F032451	MMRTDDGRIDHLQRGVRHSASREPFQDHVPDATVGPPPKLPKDRVPVAEALRQVAPRCAGSHQPKHRVEHAAMIAWRPAAAAMDQERF
JGI20252J16333_101390	JGI20252J16333_1013901	F000079	MRVYIIGNDGITLCRTAPAAVNNGEIAVASNEELHAAPLSAKRLLALWNALPDVEKRKKVGDRDA