3300001620: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032

Overview

Basic Information

• IMG/M Taxon OID: 3300001620
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057313 | Ga0003871
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1437576
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005285	Metagenome / Metatranscriptome	406	Y
F007280	Metagenome / Metatranscriptome	354	Y
F067238	Metagenome / Metatranscriptome	126	Y
F092161	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20266J16349_10147	All Organisms → cellular organisms → Bacteria	1107
JGI20266J16349_10417	All Organisms → cellular organisms → Bacteria	533
JGI20266J16349_10422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20266J16349_10147	JGI20266J16349_101472	F092161	QVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL*
JGI20266J16349_10300	JGI20266J16349_103002	F007280	LPGKLDNIGRETLLVVTTTGDLALCRAMLPERRXGATLGDMQLRSDLLNAGTATRGA*
JGI20266J16349_10417	JGI20266J16349_104171	F005285	SSGETVSVGEGMHGVGGDRMAGSWSDMNQGSLFGKGTAFMIDERSEEPCPKGDRAFVRAKKRGNARGAKGGRKVEA*
JGI20266J16349_10422	JGI20266J16349_104221	F067238	RKLLSSKAMVVNVAETRDMIPAGTIERGERKRTVDEVSKSD*