Metagenome Family F089940

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089940
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	58 residues
Representative Sequence	MKYISAXLIVLGLGIVLGAETHDWFPMFAAQIALGTVTLISGGLFATLIKTEED
Number of Associated Samples	21
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.13 %
% of genes near scaffold ends (potentially truncated)	14.81 %
% of genes from short scaffolds (< 2000 bps)	74.07 %
Associated GOLD sequencing projects	14
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.111 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water (75.000 % of family members)
Environment Ontology (ENVO)	Unclassified (75.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 57.32% β-sheet: 0.00% Coil/Unstructured: 42.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03819	MazG	12.04
PF08291	Peptidase_M15_3	10.19
PF06414	Zeta_toxin	6.48
PF12705	PDDEXK_1	6.48
PF02562	PhoH	3.70
PF12850	Metallophos_2	2.78

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	3.70
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	3.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
All Organisms	root	All Organisms	38.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Viruses	superkingdom	All Organisms → Viruses	31.48 %
cellular organisms	root	All Organisms → cellular organisms	7.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	12.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	12.04 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	12.04 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	4.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12.04 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.41 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	4.63 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.41 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4.63 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.41 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4.63 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.41 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	4.63 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.44 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.41 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4.63 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000385\|PR_CR_10_Liq_1_inCRDRAFT_1010442	Not Available	3047	Open in IMG/M
3300000385\|PR_CR_10_Liq_1_inCRDRAFT_1022183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1619	Open in IMG/M
3300000386\|P_1C_Liq_1_UnCtyDRAFT_1035718	Not Available	559	Open in IMG/M
3300005192\|Ga0073159_1000116	Not Available	4699	Open in IMG/M
3300005192\|Ga0073159_1000666	All Organisms → cellular organisms → Bacteria	2506	Open in IMG/M
3300005192\|Ga0073159_1007998	Not Available	873	Open in IMG/M
3300005192\|Ga0073159_1009214	Not Available	814	Open in IMG/M
3300005192\|Ga0073159_1009446	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	804	Open in IMG/M
3300005198\|Ga0073164_1020613	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	846	Open in IMG/M
3300007023\|Ga0080109_106978	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	870	Open in IMG/M
3300007023\|Ga0080109_107863	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	821	Open in IMG/M
3300007023\|Ga0080109_110484	Not Available	708	Open in IMG/M
3300007023\|Ga0080109_116036	Not Available	558	Open in IMG/M
3300007532\|Ga0102942_1002071	Not Available	7612	Open in IMG/M
3300007532\|Ga0102942_1003468	Not Available	5914	Open in IMG/M
3300007532\|Ga0102942_1028262	Not Available	1954	Open in IMG/M
3300007532\|Ga0102942_1030409	Not Available	1876	Open in IMG/M
3300007532\|Ga0102942_1043047	All Organisms → Viruses → Predicted Viral	1534	Open in IMG/M
3300007532\|Ga0102942_1047277	All Organisms → Viruses → Predicted Viral	1451	Open in IMG/M
3300007532\|Ga0102942_1048574	All Organisms → Viruses → Predicted Viral	1428	Open in IMG/M
3300007537\|Ga0102934_1049036	Not Available	2199	Open in IMG/M
3300007537\|Ga0102934_1102385	Not Available	1383	Open in IMG/M
3300007537\|Ga0102934_1295974	Not Available	720	Open in IMG/M
3300007537\|Ga0102934_1446831	Not Available	565	Open in IMG/M
3300007611\|Ga0102927_1013449	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1858	Open in IMG/M
3300007611\|Ga0102927_1022313	Not Available	1532	Open in IMG/M
3300007611\|Ga0102927_1023201	All Organisms → Viruses → Predicted Viral	1510	Open in IMG/M
3300007611\|Ga0102927_1068821	All Organisms → Viruses → Predicted Viral	1029	Open in IMG/M
3300007611\|Ga0102927_1088260	Not Available	941	Open in IMG/M
3300007611\|Ga0102927_1093111	Not Available	923	Open in IMG/M
3300007611\|Ga0102927_1123161	Not Available	832	Open in IMG/M
3300007611\|Ga0102927_1184438	Not Available	709	Open in IMG/M
3300007611\|Ga0102927_1190080	Not Available	700	Open in IMG/M
3300007611\|Ga0102927_1267617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	603	Open in IMG/M
3300007611\|Ga0102927_1291220	Not Available	581	Open in IMG/M
3300007616\|Ga0102936_1009894	Not Available	3520	Open in IMG/M
3300007616\|Ga0102936_1016983	All Organisms → Viruses → Predicted Viral	2626	Open in IMG/M
3300007616\|Ga0102936_1065012	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1214	Open in IMG/M
3300007616\|Ga0102936_1110732	Not Available	865	Open in IMG/M
3300007616\|Ga0102936_1217508	Not Available	556	Open in IMG/M
3300007616\|Ga0102936_1223892	Not Available	545	Open in IMG/M
3300007616\|Ga0102936_1224236	Not Available	545	Open in IMG/M
3300007616\|Ga0102936_1248147	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	510	Open in IMG/M
3300007631\|Ga0102939_1033773	Not Available	1631	Open in IMG/M
3300007631\|Ga0102939_1034399	Not Available	1614	Open in IMG/M
3300007631\|Ga0102939_1090678	Not Available	902	Open in IMG/M
3300007631\|Ga0102939_1176183	Not Available	590	Open in IMG/M
3300007668\|Ga0102935_1004053	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5323	Open in IMG/M
3300007668\|Ga0102935_1061281	Not Available	1334	Open in IMG/M
3300007668\|Ga0102935_1071924	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1220	Open in IMG/M
3300007668\|Ga0102935_1073430	All Organisms → Viruses → Predicted Viral	1205	Open in IMG/M
3300007668\|Ga0102935_1107596	Not Available	969	Open in IMG/M
3300007983\|Ga0102941_1229148	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	637	Open in IMG/M
3300008963\|Ga0102930_1003155	Not Available	5067	Open in IMG/M
3300008963\|Ga0102930_1004637	Not Available	4087	Open in IMG/M
3300008963\|Ga0102930_1006710	Not Available	3315	Open in IMG/M
3300008963\|Ga0102930_1006911	All Organisms → Viruses → Predicted Viral	3254	Open in IMG/M
3300008963\|Ga0102930_1007140	All Organisms → cellular organisms → Bacteria	3189	Open in IMG/M
3300008963\|Ga0102930_1015709	Not Available	2022	Open in IMG/M
3300008963\|Ga0102930_1031248	Not Available	1369	Open in IMG/M
3300008963\|Ga0102930_1036568	Not Available	1250	Open in IMG/M
3300008963\|Ga0102930_1041311	Not Available	1165	Open in IMG/M
3300008963\|Ga0102930_1045770	Not Available	1097	Open in IMG/M
3300008963\|Ga0102930_1081693	Not Available	784	Open in IMG/M
3300008963\|Ga0102930_1087583	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	753	Open in IMG/M
3300008963\|Ga0102930_1105335	Not Available	677	Open in IMG/M
3300008963\|Ga0102930_1138628	Not Available	581	Open in IMG/M
3300008963\|Ga0102930_1142483	Not Available	573	Open in IMG/M
3300009061\|Ga0102938_10130206	All Organisms → Viruses → Predicted Viral	1404	Open in IMG/M
3300026094\|Ga0209937_1002961	All Organisms → Viruses → Predicted Viral	4726	Open in IMG/M
3300026094\|Ga0209937_1003475	All Organisms → cellular organisms → Bacteria	4315	Open in IMG/M
3300026094\|Ga0209937_1003889	All Organisms → Viruses → Predicted Viral	4037	Open in IMG/M
3300026094\|Ga0209937_1004036	Not Available	3965	Open in IMG/M
3300026094\|Ga0209937_1005087	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3474	Open in IMG/M
3300026094\|Ga0209937_1005449	All Organisms → Viruses → Predicted Viral	3333	Open in IMG/M
3300026094\|Ga0209937_1006764	All Organisms → Viruses → Predicted Viral	2937	Open in IMG/M
3300026094\|Ga0209937_1007120	Not Available	2846	Open in IMG/M
3300026094\|Ga0209937_1011997	All Organisms → Viruses → Predicted Viral	2039	Open in IMG/M
3300026094\|Ga0209937_1016433	Not Available	1655	Open in IMG/M
3300026094\|Ga0209937_1017269	All Organisms → Viruses → Predicted Viral	1601	Open in IMG/M
3300026094\|Ga0209937_1018221	Not Available	1545	Open in IMG/M
3300026094\|Ga0209937_1019509	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1475	Open in IMG/M
3300026094\|Ga0209937_1019906	All Organisms → Viruses → Predicted Viral	1455	Open in IMG/M
3300026094\|Ga0209937_1020241	Not Available	1438	Open in IMG/M
3300026094\|Ga0209937_1020696	All Organisms → Viruses → Predicted Viral	1416	Open in IMG/M
3300026094\|Ga0209937_1024423	All Organisms → Viruses → Predicted Viral	1257	Open in IMG/M
3300026094\|Ga0209937_1025427	Not Available	1220	Open in IMG/M
3300026094\|Ga0209937_1026205	Not Available	1195	Open in IMG/M
3300026094\|Ga0209937_1040181	Not Available	875	Open in IMG/M
3300026094\|Ga0209937_1048694	Not Available	759	Open in IMG/M
3300026094\|Ga0209937_1050973	Not Available	733	Open in IMG/M
3300026094\|Ga0209937_1067855	Not Available	590	Open in IMG/M
3300026105\|Ga0209923_1002035	All Organisms → Viruses → Predicted Viral	3258	Open in IMG/M
3300026105\|Ga0209923_1009002	All Organisms → Viruses → Predicted Viral	1536	Open in IMG/M
3300026105\|Ga0209923_1015899	Not Available	1143	Open in IMG/M
3300026105\|Ga0209923_1033995	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	799	Open in IMG/M
3300026105\|Ga0209923_1053374	Not Available	659	Open in IMG/M
3300026110\|Ga0209945_1001829	Not Available	7586	Open in IMG/M
3300026110\|Ga0209945_1032338	Not Available	1347	Open in IMG/M
3300026114\|Ga0209946_1029599	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1551	Open in IMG/M
3300026124\|Ga0209965_1042239	All Organisms → Viruses → Predicted Viral	1047	Open in IMG/M
3300026124\|Ga0209965_1069459	Not Available	729	Open in IMG/M
3300026124\|Ga0209965_1092375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	588	Open in IMG/M
3300026140\|Ga0209917_1095032	Not Available	640	Open in IMG/M
3300026140\|Ga0209917_1100506	Not Available	613	Open in IMG/M
3300026197\|Ga0209925_1125512	Not Available	804	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	87.04%
Terrestrial	Environmental → Terrestrial	12.96%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	85.19%
Soil	Environmental → Terrestrial → Soil	12.96%
Marine	Environmental → Aquatic → Marine	1.85%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	75.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.96%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	9.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	75.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.96%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	9.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	75.00%
Pond Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil	12.96%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline	5.56%
Hypersaline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water	3.70%
Enviromental	Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental	1.85%
Salt Pond	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Salt Pond	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000385	Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1	Environmental	Open in IMG/M
3300000386	Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1	Environmental	Open in IMG/M
3300005192	E5 T9	Environmental	Open in IMG/M
3300005198	E2 T9	Environmental	Open in IMG/M
3300007023	Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T9	Environmental	Open in IMG/M
3300007532	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG	Environmental	Open in IMG/M
3300007537	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MG	Environmental	Open in IMG/M
3300007611	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_H2O_MG	Environmental	Open in IMG/M
3300007616	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG	Environmental	Open in IMG/M
3300007631	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG	Environmental	Open in IMG/M
3300007668	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG	Environmental	Open in IMG/M
3300007983	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D2_MG	Environmental	Open in IMG/M
3300008963	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG	Environmental	Open in IMG/M
3300009061	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG	Environmental	Open in IMG/M
3300026094	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026105	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026110	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG (SPAdes)	Environmental	Open in IMG/M
3300026114	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026124	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026140	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026197	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MG (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
PR_CR_10_Liq_1_inCRDRAFT_10104426	3300000385	Enviromental	MKYISAXLIVLGLGIVLGAETHDWFPMFAAQIALGTVTLISGGLFATLIKTEED*
PR_CR_10_Liq_1_inCRDRAFT_10221833	3300000385	Enviromental	MKYIAAFLIVLGLGIVLGAETHDWFPMFAAQIALGTVTLFSGFLFATQMDE*
P_1C_Liq_1_UnCtyDRAFT_10357182	3300000386	Salt Pond	MKYIAAFLIVLGLGIIAGSETHDWMPMFMAQIGLGVATTFFGYLFATQVDE*
Ga0073159_10001163	3300005192	Hypersaline	MKYAAAFFIVFGLAIVGGAETQDWFPMFVAQIGLGVVTLITGGMFALHFANEEED*
Ga0073159_10006667	3300005192	Hypersaline	MKYIAAFLIVLGLAIVGGAETHDWFPMFAAQIGLGTATLFAGYLFTTQIGDNDA*
Ga0073159_10079983	3300005192	Hypersaline	MKYAAAFFIILGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLF
Ga0073159_10092141	3300005192	Hypersaline	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFATQIDTEEDDT*
Ga0073159_10094461	3300005192	Hypersaline	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGVVTLIAGGLFASQIEIENER*
Ga0073164_10206132	3300005198	Hypersaline	MKYIAAFLIVLGLAIVGGAEAHDWFPLFATQVGLGTMTMVSGFLFATQVGDNNE*
Ga0080109_1069782	3300007023	Hypersaline Water	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGTITLITGGLFATLINTEEDNT*
Ga0080109_1078633	3300007023	Hypersaline Water	MKYIAAFLIVLGLAIVGGAEAHDWFPLFATQVGLGTMTMVSGLLFATQVGDNNE*
Ga0080109_1104841	3300007023	Hypersaline Water	AAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0080109_1160362	3300007023	Hypersaline Water	IMKYAAAFFIVLGLAIVGGAETQDWFPMFIAQIGLGVVTLITGGLFALHFANEEED*
Ga0102942_100207115	3300007532	Pond Water	MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDE*
Ga0102942_10034682	3300007532	Pond Water	MKYIAVFLIVLGLGIISGAETHDWFPMFAAQIALGTATLFSGGLFATLIDTEED*
Ga0102942_10282622	3300007532	Pond Water	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102942_10304091	3300007532	Pond Water	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN*
Ga0102942_10430473	3300007532	Pond Water	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGVVTLIAGGLFASQIEIENE*
Ga0102942_10472772	3300007532	Pond Water	MDSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE*
Ga0102942_10485742	3300007532	Pond Water	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDDEEEVE*
Ga0102934_10490363	3300007537	Pond Soil	MKYVSAALIVLGLSISIGAEAHDWFPMFATQIALGMTVSFSGVLFATQIDFDDDDN*
Ga0102934_11023851	3300007537	Pond Soil	MKYVSAALIVLGLSITIGAEAHDWFPMFAAQIALGAVTIISGGLFATLIDTSEE*
Ga0102934_12959742	3300007537	Pond Soil	MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDE*
Ga0102934_14468312	3300007537	Pond Soil	MKYASAFFIVLGLGIVVGAETQDWLPMFTAQVALGTVTLITGGLFATQIDIEEDDT*
Ga0102927_10134493	3300007611	Pond Water	LAIYNSLELVYNRLNSEEKKVYIMKYISAALIVLGLGIILGAETHDWFPMFAAQVALGTVTLISGGLFATQIETEED*
Ga0102927_10186241	3300007611	Pond Water	LAIYNSSELVYNRLNSEGKKVYIMKYISAALIVLGLGIALGAETHDWFPMFAAQVALGTVTLIS
Ga0102927_10223131	3300007611	Pond Water	MVSTVKERNHIMTKYISAALIVLGLGIVIGAEAHDWFPMFATQIALGMTVSFSGVLFATQIDFDDDDN*
Ga0102927_10232014	3300007611	Pond Water	MDSTVKERRNYSMKYVSAALIVLGLSIVLGAEAHDWFPMFITQIALGMVTSFFGILVAIQINTDEQ*
Ga0102927_10688213	3300007611	Pond Water	CSPEGGCIIMKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE*
Ga0102927_10882602	3300007611	Pond Water	MKFLSAFLIVFGLAIIGGAETHDWFPMFAAQIALGIVTLFSGFLFATQVDDWYNE*
Ga0102927_10931111	3300007611	Pond Water	MKYAAAFFIFLGLGIVVGAETQDWFPMFAAQVALGTVTLITGGLFAAQIDTEEDDT*
Ga0102927_11231613	3300007611	Pond Water	ASLIVLGLGIVLGAVTHDWLPMFAAQVALGTVTLISGGLFATLIKTEED*
Ga0102927_11844383	3300007611	Pond Water	IVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFATQIDTEEDDT*
Ga0102927_11900801	3300007611	Pond Water	IDSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE*
Ga0102927_12676171	3300007611	Pond Water	MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQILLGMLTSFSGFLFATQMDE*
Ga0102927_12912201	3300007611	Pond Water	MKYIAAFHIVLGLGIIAGAETHDWMPMFMAQIALGTVTLFSGFLFATQMDE*
Ga0102936_10098943	3300007616	Pond Water	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFATQIDTDD*
Ga0102936_10169834	3300007616	Pond Water	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGVVTLIAGGLFASQIVIENE*
Ga0102936_10650123	3300007616	Pond Water	MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE*
Ga0102936_11107322	3300007616	Pond Water	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDEEEVE*
Ga0102936_12175081	3300007616	Pond Water	FYIMKIISAALIVLGFGIIAGAETHDWFPMFATQIALGTTVLISGGLFATQINDDDEEEVE*
Ga0102936_12238922	3300007616	Pond Water	MKYAAAFFIVFGLGIVASAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102936_12242362	3300007616	Pond Water	MKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTVISGGLFATLIDTSEE*
Ga0102936_12481472	3300007616	Pond Water	MKYIAAFFIVLGLGIVLGAETHDWFPMFAAQIALGTVTLFSGFLFATQMDE*
Ga0102939_10337732	3300007631	Pond Water	MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD*
Ga0102939_10343996	3300007631	Pond Water	AFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102939_10906782	3300007631	Pond Water	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDNDDN*
Ga0102939_11761831	3300007631	Pond Water	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTDD*
Ga0102935_10040539	3300007668	Pond Soil	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGEVTLIAGGLFASQIVIENE*
Ga0102935_10612811	3300007668	Pond Soil	MVSTVKERKNYIMKYIAVLLVLLGLTIIVGAESHDWFPMFITQIALGMTVSFSGILFALQSDFDDDDD*
Ga0102935_10719243	3300007668	Pond Soil	MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE*
Ga0102935_10734302	3300007668	Pond Soil	MKIISAALIVLGFGIIAGSETHDWFPMFATQIALGTTVLISGGLFATQINDDDEEEVE*
Ga0102935_11075964	3300007668	Pond Soil	MVSTVKERRNYSMKYVSAALIVLGLGIVIGAETHDWFPMFATQIALGTVTTISGGLFATLIDTSEE*
Ga0102941_12291482	3300007983	Pond Soil	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDDDEEEVE*
Ga0102930_10031554	3300008963	Pond Water	MKYAAAFFIVFGLAIVGGAETQDWFPMFVAQIGLGVVTLITGGLFVSHIDSDD*
Ga0102930_10046377	3300008963	Pond Water	MKYIAAFLIVLGLGIIAGAETHDWMPMFMAQIALGTVTLFSGFLFATQMDE*
Ga0102930_10067102	3300008963	Pond Water	MKYVSAALIVLGLSITIGAEAHDWFPMFAAQIALGAVTIISGGLFATLINTSEE*
Ga0102930_10069114	3300008963	Pond Water	MKYISAALIVLGLGIALGAEAHDWLPMFATQVALGTITAITGVLFASHTFTDTDEE*
Ga0102930_10071407	3300008963	Pond Water	VLAIYNSSELVYNRLNSEGKKVYIMKYISAALIVLGLGIVLGAETHDWFPMFAAQVALGTVTLISGGLFATLIKTEED*
Ga0102930_10108462	3300008963	Pond Water	LVYNRLNSEGKKVYIMKYISAALIVLGLGIVLGAETHDWFPMFAAQVALGTVTLISGGLFATLIKTEED*
Ga0102930_10157094	3300008963	Pond Water	MDSTVKERRNYNMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTVISGGLFATLIDTSEE*
Ga0102930_10312481	3300008963	Pond Water	LAIYNSSELVYNRLNSEGKKVYIMKYISAALIVLGLGIALGAETHDWFPMFAAQVALGTVTLISGGLFATLIKTEED*
Ga0102930_10365681	3300008963	Pond Water	NSEGKKVYIMKYISAALIVLGLGIVLGAETHDWFPMFAAQVALGTVTLISGGLFATQIKTEED*
Ga0102930_10413112	3300008963	Pond Water	MVSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIGTGEE*
Ga0102930_10457703	3300008963	Pond Water	MKFLSAFFIVFGLAIIGGAETHDWFPMFAAQIALGIVTLFSGFLFATQVDDWYNE*
Ga0102930_10816931	3300008963	Pond Water	MKYAAAFFIVLGLGIVVGAETQDWFPMFAAQVALGTVTLITGGLFAAQIDTEEDDT*
Ga0102930_10875833	3300008963	Pond Water	LTLREKLRDFYIMKIISAALIVLGFGIIAGAETHDWFPMFATQIALGTTVLISGGLFATQINDDDEEEVE*
Ga0102930_11053353	3300008963	Pond Water	NIMKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQILLGMLTSFSGFLFATQMDE*
Ga0102930_11386281	3300008963	Pond Water	MDLTVKERRNYIMKYISAALIVLGLSIVIGAEAHNWLPMFAAQVALGTVTSFAGILFALQIEADES*
Ga0102930_11424832	3300008963	Pond Water	MKYASAFFIVLGLGIVVGAETQDWLPMFAAQVALGTVTLITGGLFATQIDIEEDDT*
Ga0102938_101302064	3300009061	Pond Soil	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFAAQIALGMTVSFSGVLFATQIDFDDDDN*
Ga0209937_10029615	3300026094	Pond Water	MKYISAALIVLGLGIVLGAETHDWFPMFAAQVALGTVTLISGGLFATLIKTEED
Ga0209937_10034753	3300026094	Pond Water	MKFLSAFFIVFGLAIIGGAETHDWFPMFAAQIALGIVTLFSGFLFATQVDDWYNE
Ga0209937_10038894	3300026094	Pond Water	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDEEEVE
Ga0209937_10040362	3300026094	Pond Water	MKYAAAFFIVLGLGIVVGAETQDWFPMFAAQVALGTVTLITGGLFAAQIDTEEDDT
Ga0209937_10050876	3300026094	Pond Water	MKYIAAFLIVLGLAIVGGAEAHDWFPLFATQVGLGTMTMVSGFLFATQVGDNNE
Ga0209937_10054498	3300026094	Pond Water	MDSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE
Ga0209937_10067643	3300026094	Pond Water	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGVVTLIAGGLFASQIVIENE
Ga0209937_10071202	3300026094	Pond Water	MKYIAAFLIVLGLGIIAGAETHDWMPMFMAQIALGTVTLFSGFLFATQMDE
Ga0209937_10119973	3300026094	Pond Water	MKYIAAFLIVLGLGIVLGAETHDWFPMFAAQIALGTVTLFSGFLFATQMDE
Ga0209937_10164335	3300026094	Pond Water	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT
Ga0209937_10172694	3300026094	Pond Water	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDDDDEEEIE
Ga0209937_10182214	3300026094	Pond Water	MKYAAAFFIVFGLAIVGGAETQDWFPMFVAQIGLGVVTLITGGLFVSHIDSDD
Ga0209937_10195091	3300026094	Pond Water	MKYISAALIVLGLGIILGAETHDWFPMFAAQVALGTVTLISGGLFATQIETEED
Ga0209937_10199063	3300026094	Pond Water	MKYVSAALIVLGLSIVLGAEAHDWFPMFITQIALGMVTSFFGILVAIQINTDEQ
Ga0209937_10202413	3300026094	Pond Water	MDSTVKERRNYNMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTVISGGLFATLIDTSEE
Ga0209937_10206964	3300026094	Pond Water	MKYIAAFFIVLGLGIVLGAETHDWFPMFAAQIALGTVTLFSGFLFATQMDE
Ga0209937_10244233	3300026094	Pond Water	MVSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIGTGEE
Ga0209937_10254271	3300026094	Pond Water	MKYVSAALIVLGLSITIGAEAHDWFPMFAAQIALGAVTIISGGLFATLIDT
Ga0209937_10262052	3300026094	Pond Water	MKYVSAALIVLGLSISIGAEAHDWFPMFATQIALGMTVSFSGVLFATQIDFDDDDN
Ga0209937_10401811	3300026094	Pond Water	MTKYISAALIVLGLGIVIGAEAHDWFPMFAAQIALGMTVSFSGVLFATQIDFDDDDN
Ga0209937_10486943	3300026094	Pond Water	MKYAAAFFIVLGLGIVAGAETQEWFPMFAAQVALGVVTLITGGLFATQIDTEEDDT
Ga0209937_10509733	3300026094	Pond Water	MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE
Ga0209937_10678552	3300026094	Pond Water	MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDE
Ga0209923_10020354	3300026105	Pond Water	MDSTVKERRNYSMKYVSAALIVLGLSIVLGAEAHDWFPMFITQIALGMVTSFFGILVAIQINTDEQ
Ga0209923_10090022	3300026105	Pond Water	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDDDEEEVE
Ga0209923_10158993	3300026105	Pond Water	MTKYISAALIVLGLGIVIGAEAHDWFPMFATQIALGMTVSFSGVLFATQIDFDDDDN
Ga0209923_10339951	3300026105	Pond Water	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGVVTLIAGGLFASQIEIENE
Ga0209923_10533742	3300026105	Pond Water	MKYASAFFIVLGLGIVVGAETQDWLPMFAAQVALGTVTLITGGLFATQIDIEEDDT
Ga0209945_10018293	3300026110	Pond Soil	MKYIAVFLIVLGLGIISGAETHDWFPMFAAQIALGTATLFSGGLFATLIDTEED
Ga0209945_10323381	3300026110	Pond Soil	MKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN
Ga0209946_10295992	3300026114	Pond Water	MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE
Ga0209965_10422391	3300026124	Pond Water	YLTLREKLRDFYIMKIISAALIVLGFGIIAGAETHDWFPMFASQIALGTTVLISGGLFATQINNDDEEEEVE
Ga0209965_10694591	3300026124	Pond Water	MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD
Ga0209965_10923752	3300026124	Pond Water	MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSG
Ga0209917_10950322	3300026140	Pond Water	MVSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE
Ga0209917_11005062	3300026140	Pond Water	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN
Ga0209925_11255122	3300026197	Pond Soil	MKYIAAFLIVLGLAIVGGAEAHNWFPMFAAQIALGTVTLFSGILFAIEVDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089940

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences