3300007631: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300007631
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125935 | Ga0102939
• Sample Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 353018812
• Sequencing Scaffolds: 37
• Novel Protein Genes: 39
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
Not Available	21
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	1
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	1
All Organisms → Viruses → environmental samples → uncultured virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4961
  • Long. (^o): -122.1331
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009454	Metagenome	317	Y
F018646	Metagenome / Metatranscriptome	234	Y
F026202	Metagenome	198	Y
F038111	Metagenome	166	N
F041612	Metagenome	159	N
F054456	Metagenome	140	N
F062489	Metagenome	130	Y
F066493	Metagenome	126	Y
F066527	Metagenome / Metatranscriptome	126	N
F066711	Metagenome / Metatranscriptome	126	Y
F072017	Metagenome	121	Y
F079661	Metagenome	115	Y
F083454	Metagenome	113	N
F089905	Metagenome	108	N
F089940	Metagenome	108	Y
F091393	Metagenome / Metatranscriptome	107	Y
F094957	Metagenome	105	N
F096726	Metagenome	104	N
F097996	Metagenome	104	N
F098765	Metagenome	103	N
F098766	Metagenome	103	Y
F099972	Metagenome	103	Y
F104555	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102939_1010079	All Organisms → Viruses → Predicted Viral	3141
Ga0102939_1012766	All Organisms → Viruses → Predicted Viral	2784
Ga0102939_1016898	All Organisms → Viruses → Predicted Viral	2388
Ga0102939_1023139	All Organisms → Viruses → Predicted Viral	2012
Ga0102939_1025372	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1916
Ga0102939_1026345	All Organisms → Viruses → Predicted Viral	1877
Ga0102939_1033773	Not Available	1631
Ga0102939_1034399	Not Available	1614
Ga0102939_1036621	All Organisms → Viruses → Predicted Viral	1558
Ga0102939_1042386	All Organisms → Viruses → Predicted Viral	1429
Ga0102939_1043193	Not Available	1413
Ga0102939_1047500	Not Available	1337
Ga0102939_1053949	Not Available	1239
Ga0102939_1058408	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	1184
Ga0102939_1065477	Not Available	1104
Ga0102939_1070061	Not Available	1059
Ga0102939_1090678	Not Available	902
Ga0102939_1102255	All Organisms → Viruses	837
Ga0102939_1117530	Not Available	766
Ga0102939_1121164	Not Available	751
Ga0102939_1125859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	733
Ga0102939_1127206	Not Available	728
Ga0102939_1130434	Not Available	716
Ga0102939_1130782	Not Available	715
Ga0102939_1144431	Not Available	671
Ga0102939_1155155	Not Available	641
Ga0102939_1172339	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	599
Ga0102939_1176123	Not Available	591
Ga0102939_1176183	Not Available	590
Ga0102939_1187763	Not Available	567
Ga0102939_1196841	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	550
Ga0102939_1201698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	542
Ga0102939_1209449	Not Available	529
Ga0102939_1209452	Not Available	529
Ga0102939_1217424	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	516
Ga0102939_1219461	Not Available	513
Ga0102939_1223418	All Organisms → Viruses → environmental samples → uncultured virus	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102939_1010079	Ga0102939_10100791	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLVETDNKKLKKFMNIYGLTLDHKPLCDD
Ga0102939_1012766	Ga0102939_10127661	F038111	MIHRVPVVNRPEYTIWLENYKGIANFIHADVYKYNKTVREDFGKNLDKLMDLHVDPLYVLTETDNKKLKKFMSIYGLELDHRPNCNDGVAREVFRLTRRQ*
Ga0102939_1016898	Ga0102939_10168982	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEDFYTIRDTILGD*
Ga0102939_1023139	Ga0102939_10231393	F066711	VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKIYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFDI*
Ga0102939_1025372	Ga0102939_10253722	F066493	MRQSREWDDGLIDVAGELVKEHSAEGAIERLQRRRQTSDDELQARCNEAIAYIRREVQDE
Ga0102939_1026345	Ga0102939_10263456	F079661	PWTADMTKTTIELPESTRDKLKAERKPHESNYGETIERLLGDTSGGSLWTEQEIRDMIEREIEQHARH*
Ga0102939_1033773	Ga0102939_10337732	F089940	MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD*
Ga0102939_1034399	Ga0102939_10343996	F089940	AFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102939_1036621	Ga0102939_10366211	F089905	MRTVKEVEQDIREAESAQAETEFSSTMWDSLNAEITGLHAELKRATYHWDRLKLCGMMGVDTH
Ga0102939_1042386	Ga0102939_10423861	F094957	NTMKALTGYMAQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGTLSRAEVEQRTNTWLDAITELDAIEQELTA*
Ga0102939_1043193	Ga0102939_10431931	F026202	MKNVVSCDAASKAAVLSVSSKELLVRASVLAELDLNDMGGTMLPVEVLWASQSRLEGCGWCWGSASACSGCH*
Ga0102939_1047500	Ga0102939_10475002	F094957	MKALTEYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTRAEVEARTNTWLDAITELDAIEQELTA*
Ga0102939_1053949	Ga0102939_10539493	F096726	MTRDEWIDPADTEASIRDHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSQSQYDPITVRFVEDGGE*
Ga0102939_1058408	Ga0102939_10584081	F041612	RDLLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPVAVTQQIDPAAHGTVGGAGGVSIETA*
Ga0102939_1065477	Ga0102939_10654772	F066493	MSQSREWTDGVIDVADELVQEHSAEGAIERLERRKESTRSDDLEARCREAIDWIESEVQSDD*
Ga0102939_1070061	Ga0102939_10700613	F091393	MSEKKTAEEIAQYYNAAMDSVNLINKGQQEDMSDE
Ga0102939_1090678	Ga0102939_10906782	F089940	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDNDDN*
Ga0102939_1097993	Ga0102939_10979933	F104555	DLSFRSVLTMRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF*
Ga0102939_1102255	Ga0102939_11022551	F062489	MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEIVEELAIDAPERER*
Ga0102939_1117530	Ga0102939_11175302	F054456	VNAMYEPTLDFKTDTEQLSPAQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTLPQFEQSEGEPLIEDESPKIHKDELSIMRWGVDPNPEDDFL*
Ga0102939_1121164	Ga0102939_11211641	F079661	MSNTTIQIPESVRDELRDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIELVTR
Ga0102939_1125859	Ga0102939_11258592	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ*
Ga0102939_1127206	Ga0102939_11272062	F098765	ASATDTAPLAVTQQIDPAAHGTVGGAGGVTIETG*
Ga0102939_1130434	Ga0102939_11304342	F097996	FVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRAVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE*
Ga0102939_1130782	Ga0102939_11307822	F097996	MATNTDGMHPRYLGFQVDWPVFVKMPFSADGHAWKRQEHFNWAERGIDQKQVATLYATGHIYHNYELEKQNKVGDRLGELNSEQLKRLVVQLNDIVKRRTTTTKEFQDKRCKQSKLEDKQRGLVRRFLNRNQWILEDFYEIRDYILSE*
Ga0102939_1144431	Ga0102939_11444311	F066527	MTNRFYHEDLLDEFGDDLERIFGPIEERTRGLTSLAGQPDGDLKALIKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSIDPATGKSIFYGYNLPYFITEERVQGVEEFAWDEIYIDYNVQRNIDVAHIIKDILVEWDTKLCDPAHCRMQSDNSLDVNDSQHATCARALVGAAVCPATYIVSDAKSD
Ga0102939_1155155	Ga0102939_11551552	F038111	MIHRVPVVNKNNYTIWLENYRHIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102939_1172339	Ga0102939_11723391	F009454	AILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCIELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPSYWDERLTGNGKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
Ga0102939_1176123	Ga0102939_11761231	F062489	AIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVVESLAIDCPGGER
Ga0102939_1176183	Ga0102939_11761831	F089940	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTDD*
Ga0102939_1180665	Ga0102939_11806652	F098765	VELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG*
Ga0102939_1187763	Ga0102939_11877632	F079661	MSDTTIQIPESVRDELKDERLPHESNYGETIERLLGDSTGGQLWTEHELKDLIDHRIQFHRR*
Ga0102939_1196841	Ga0102939_11968412	F038111	MIPSKVPVVNNPDYTIWLENYRNIATFIHADVYKYNKSVRQEFGEDLDKLLRLHNFPLYVLTNKDNTKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRRV*
Ga0102939_1201698	Ga0102939_12016981	F018646	MLKRENLPPFKKLPYNFDVEKIQEVLRQMPHVDDLKVKNGYGDKVGGKSSKLQKAFGLKFNTIEDAYEWLQKNDVAESELSKGLNGKRMAWDFRNYVKPFENYIQKDDEGKYEVNGSPYKQIALTEYNPESENRVYDKKIPKSRLDERH
Ga0102939_1209449	Ga0102939_12094492	F062489	MPGPDAIVIRERRAEGPTRRYVYHPLAAGGYERTEELWREAKDGWHTTGTEVVAALAIEHPGDGSLTIGTE*
Ga0102939_1209452	Ga0102939_12094521	F099972	TMPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLNDL*
Ga0102939_1217424	Ga0102939_12174242	F098766	MTHPRCAICGYEAHGDDYVRVEVERVPPEKPPETYYFHTRCFDRTQAWERDL
Ga0102939_1219461	Ga0102939_12194611	F083454	MSDKTTIGLKISHERNARIERKVDDENYSSRQAYIRELIDDDLGGFDTTVESTTTEHTPDDRRDAEIYEALLDSIPLKGWTRYDRFKG
Ga0102939_1223418	Ga0102939_12234182	F072017	MSLNQTPSLDSQSDTDIKSTVHKHDAIHRLTQEHIDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVEQ*