3300026140: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026140
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125936 | Ga0209917
• Sample Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 242091418
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4965
  • Long. (^o): -122.133
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016383	Metagenome / Metatranscriptome	247	Y
F041612	Metagenome	159	N
F043882	Metagenome	155	Y
F089905	Metagenome	108	N
F089940	Metagenome	108	Y
F090210	Metagenome	108	Y
F094957	Metagenome	105	N
F104555	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209917_1058350	Not Available	926
Ga0209917_1075021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766
Ga0209917_1091058	Not Available	661
Ga0209917_1095032	Not Available	640
Ga0209917_1096374	Not Available	633
Ga0209917_1100506	Not Available	613

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209917_1046441	Ga0209917_10464411	F043882	MGTFYIEYPELAYVHVPRTGMAMKKIIAEWLKPNFLVTDNENWQIDHPHICTVKSYYPSALTFSVVRNPWQRVFSLYKKIRTEGYWLDWNNVSLLDLKPINEWVLEYCDPDIVFEFPRWFTRFTNQLDFINIEGICVDIICKAENLDRDFLSVKEYLGCNAPLPDITNYDHWEYKKHLNQKSLN
Ga0209917_1058350	Ga0209917_10583501	F094957	MKALTQYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDA
Ga0209917_1061750	Ga0209917_10617503	F090210	SPAKYWYVDEEESEKGLVLDHCMIIERWAFAGAAREQLEEVAKDRPILYKLLGIKPKWGIDFSLDYVSQEICMEVMHVEQDFLTVEDALIAKQKLEHIIENTDWQAGAEELIARKAEWYDLSSDDHSDYKAQFFGWARAFDNRKVFS
Ga0209917_1075021	Ga0209917_10750212	F041612	VTLTRELLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG
Ga0209917_1083345	Ga0209917_10833452	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIEHNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEV
Ga0209917_1091058	Ga0209917_10910582	F016383	MKNADFEYYYNNVPGKGKCRNNLIYTSLISKDRKIFCKWFYNDKVYHNNQNEVVDASLMDLKWHKEIE
Ga0209917_1095032	Ga0209917_10950322	F089940	MVSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE
Ga0209917_1095904	Ga0209917_10959042	F090210	LDHCMIIERYAFAGEARAQLEEVAQERPILYKLLGIKPKWGIDFSLDYVSQDICMEVMHVEQDFLSIEEAVEAKQKLEHIIETTDWEAGAQELIKRKSEWYNLSSDDHSDYKAQFFGWHRAFDNRKVFSG
Ga0209917_1096374	Ga0209917_10963741	F089905	MRTVREIQQEIREAEEAQAETEFSSVGWDFLNAEIIGLHAELKRATYHWDRLKLCGM
Ga0209917_1100506	Ga0209917_11005062	F089940	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN