3300026124: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026124
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125935 | Ga0209965
• Sample Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 214123628
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → Viruses → Predicted Viral	4
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4961
  • Long. (^o): -122.1331
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032166	Metagenome	180	Y
F038111	Metagenome	166	N
F041612	Metagenome	159	N
F062489	Metagenome	130	Y
F065465	Metagenome	127	N
F066493	Metagenome	126	Y
F066711	Metagenome / Metatranscriptome	126	Y
F085171	Metagenome	111	N
F089940	Metagenome	108	Y
F094957	Metagenome	105	N
F100063	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209965_1000830	All Organisms → cellular organisms → Bacteria → Proteobacteria	10888
Ga0209965_1002759	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	6017
Ga0209965_1003686	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	5123
Ga0209965_1016475	All Organisms → Viruses → Predicted Viral	2042
Ga0209965_1019771	All Organisms → Viruses → Predicted Viral	1803
Ga0209965_1030400	All Organisms → Viruses → Predicted Viral	1328
Ga0209965_1042239	All Organisms → Viruses → Predicted Viral	1047
Ga0209965_1057181	Not Available	842
Ga0209965_1069459	Not Available	729
Ga0209965_1084152	Not Available	632
Ga0209965_1090705	Not Available	596
Ga0209965_1090962	Not Available	595
Ga0209965_1092375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	588
Ga0209965_1103907	All Organisms → Viruses	536
Ga0209965_1109523	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209965_1000830	Ga0209965_10008301	F038111	NMIHRVPVVNRNDYTIWLENYKNIANFIHAEVYKYNKTTREAFGKDLDKLMDLHQNPLYVLVETDNNKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209965_1002759	Ga0209965_10027595	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ
Ga0209965_1003686	Ga0209965_10036861	F100063	MSETCEVCGQFTGQTESFDLWIRGLDRRGEGERIETDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDTNSVQLHPITGNHLPESIDGYVIGKID
Ga0209965_1016475	Ga0209965_10164753	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDRIEREVYRLDRRV
Ga0209965_1019771	Ga0209965_10197712	F066711	VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKNYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFD
Ga0209965_1030400	Ga0209965_10304001	F065465	ARSMGYRRYADMPAADIVAAWPVHYTEHGSWDSHILPTLRCLAGYGDRGYGTYQERQDVALIQDGDEADMPADAIILDSSHLLDDIIVSWQDGAHTAVTDTLRQSDEYSLEDIQR
Ga0209965_1042239	Ga0209965_10422391	F089940	YLTLREKLRDFYIMKIISAALIVLGFGIIAGAETHDWFPMFASQIALGTTVLISGGLFATQINNDDEEEEVE
Ga0209965_1057181	Ga0209965_10571811	F041612	VTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPVAVTQQIDPAAHGTVGGAGGVSIETA
Ga0209965_1069459	Ga0209965_10694591	F089940	MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD
Ga0209965_1081989	Ga0209965_10819891	F032166	DGFNEIEEAEELLDFQRRTQGQIKSQGLGENYLTDERDMTKREAASIRWAIDPDEEREWL
Ga0209965_1084152	Ga0209965_10841522	F094957	EEGNTMKALTGYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGKLTRAEVEERTNTWLDAMTELDKIEQELTA
Ga0209965_1090705	Ga0209965_10907051	F085171	MTHTDLEGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRCVEPHQIVIEARVDLSNVDLEDIDLGVD
Ga0209965_1090962	Ga0209965_10909621	F066493	GGGRMSQSREWTDGVIDVADELVQEHSAEGAIEHLQRRRQTSDDELQARCNEAIAWIRREVQSDD
Ga0209965_1092375	Ga0209965_10923752	F089940	MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSG
Ga0209965_1103907	Ga0209965_11039071	F062489	MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEVVEELAIDAPEGER
Ga0209965_1109523	Ga0209965_11095232	F066493	MTERREFDDGLIDVADELVKEHSADGAIDRLQRRRESTRSEDLEARCLEAIAYIRREVQDDT