Sample 3300026114

Overview

Basic Information
IMG/M Taxon OID	3300026114 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125934 \| Ga0209946
Sample Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	259273896
Sequencing Scaffolds	16
Novel Protein Genes	19
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	8
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Natronoarchaeaceae → Halostella → Halostella pelagica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Chromohalobacter → Chromohalobacter salexigens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → pond → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F029568	Metagenome / Metatranscriptome	188	Y
F032166	Metagenome	180	Y
F038111	Metagenome	166	N
F066493	Metagenome	126	Y
F066711	Metagenome / Metatranscriptome	126	Y
F079661	Metagenome	115	Y
F085171	Metagenome	111	N
F089905	Metagenome	108	N
F089940	Metagenome	108	Y
F094957	Metagenome	105	N
F096726	Metagenome	104	N
F099972	Metagenome	103	Y
F104555	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F004256

Metagenome

446

F029568

Metagenome / Metatranscriptome

188

F032166

Metagenome

180

F038111

Metagenome

166

F066493

Metagenome

126

F066711

Metagenome / Metatranscriptome

126

F079661

Metagenome

115

F085171

Metagenome

111

F089905

Metagenome

108

F089940

Metagenome

108

F094957

Metagenome

105

F096726

Metagenome

104

F099972

Metagenome

103

F104555

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209946_1015261	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2421	Open in IMG/M
Ga0209946_1015352	All Organisms → Viruses → Predicted Viral	2412	Open in IMG/M
Ga0209946_1015813	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2366	Open in IMG/M
Ga0209946_1021435	All Organisms → Viruses → Predicted Viral	1929	Open in IMG/M
Ga0209946_1029599	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1551	Open in IMG/M
Ga0209946_1047733	Not Available	1110	Open in IMG/M
Ga0209946_1050679	Not Available	1064	Open in IMG/M
Ga0209946_1056205	Not Available	988	Open in IMG/M
Ga0209946_1059316	Not Available	951	Open in IMG/M
Ga0209946_1069840	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Natronoarchaeaceae → Halostella → Halostella pelagica	843	Open in IMG/M
Ga0209946_1076428	Not Available	789	Open in IMG/M
Ga0209946_1084462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Chromohalobacter → Chromohalobacter salexigens	731	Open in IMG/M
Ga0209946_1091851	Not Available	686	Open in IMG/M
Ga0209946_1095241	Not Available	668	Open in IMG/M
Ga0209946_1108760	Not Available	603	Open in IMG/M
Ga0209946_1113385	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209946_1015261

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

2421

Open in IMG/M

Ga0209946_1015352

All Organisms → Viruses → Predicted Viral

2412

Open in IMG/M

Ga0209946_1015813

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

2366

Open in IMG/M

Ga0209946_1021435

All Organisms → Viruses → Predicted Viral

1929

Open in IMG/M

Ga0209946_1029599

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

1551

Open in IMG/M

Ga0209946_1047733

Not Available

1110

Open in IMG/M

Ga0209946_1050679

Not Available

1064

Open in IMG/M

Ga0209946_1056205

Not Available

988

Open in IMG/M

Ga0209946_1059316

Not Available

951

Open in IMG/M

Ga0209946_1069840

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Natronoarchaeaceae → Halostella → Halostella pelagica

843

Open in IMG/M

Ga0209946_1076428

Not Available

789

Open in IMG/M

Ga0209946_1084462

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Chromohalobacter → Chromohalobacter salexigens

731

Open in IMG/M

Ga0209946_1091851

Not Available

686

Open in IMG/M

Ga0209946_1095241

Not Available

668

Open in IMG/M

Ga0209946_1108760

Not Available

603

Open in IMG/M

Ga0209946_1113385

All Organisms → cellular organisms → Bacteria → Proteobacteria

583

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209946_1015261	Ga0209946_10152611	F032166	EDAIELLETPADEWRDLDDGFNEVEEAEELLDFQRRTQGQIEAQGLGENYLTDERDMTKREAASIRWAIDPDTEREWL
Ga0209946_1015352	Ga0209946_10153521	F089905	MRTVREIEQDIREAEEAQAETEFSSTSWDSLNAEITGLHRELKRATYHWDRLRLCGMMGVDTYG
Ga0209946_1015813	Ga0209946_10158132	F096726	MTRDEWIDPADTEASIREHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSQSQYDPITVRFVEDGGE
Ga0209946_1021435	Ga0209946_10214353	F038111	TIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209946_1029599	Ga0209946_10295992	F089940	MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE
Ga0209946_1047733	Ga0209946_10477331	F094957	MKALTGYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDAIEQELTA
Ga0209946_1047744	Ga0209946_10477442	F029568	IEQHSGYGVLFKTSTGEPMVMGGVFNDGRYPSNVAKQINRLYTFPKFRMTRSDMTDGFRCTCKLIDALSAVNDYEIYLITMQNRPNRKNKGFWNLWCKHMNIASKGAWNLGEGYIQTCPWNVQKCWQNFVWQEKKEGTFREWWPKTIDHVEWLSLEEGK
Ga0209946_1050186	Ga0209946_10501864	F089905	REAEEAQAETEFSSTSWDSLNAEITGLHRELKRATYHWDRLKLCGMMGVDTYGR
Ga0209946_1050679	Ga0209946_10506792	F099972	MPKANKGKRLLNLPEASQYSASSYWRGVEHGRREGRAEVLKALESLSADIKKDVENKISD
Ga0209946_1056205	Ga0209946_10562052	F004256	LNYNYYWNDVPGIGLCRNNLVYTSLMSEDKKVFVQWFYNDGEYHKGQNEVLDPKLMGEKFNREIYYLKIMKENYPDLVPDYSLDLDDRKVFLQVDGKDFWNRAKCSVENYSNVIPDWKQQMLDILEKHKNLGLFKFSLHPSSYFIVNRKLKSINYFFTYHKNEGPISISDHASHIYSSRQDTMQKQIESMGISWNNPEPLEKLQILCFESFRSNYTDDFINQAKEIYYD
Ga0209946_1059316	Ga0209946_10593161	F094957	QEGNTMKALTGYMAQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILTKDGTLTRAEVEARTNTWLDAITELNAIEQELTA
Ga0209946_1069840	Ga0209946_10698401	F079661	MSNTTIQIPESVRDELKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIEQVTRR
Ga0209946_1076428	Ga0209946_10764283	F085171	MSEARKRTHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRCVEPHQIVIEARVDLSNVDLEDIDLGVD
Ga0209946_1084462	Ga0209946_10844622	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIERE
Ga0209946_1091851	Ga0209946_10918511	F099972	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDLER
Ga0209946_1091884	Ga0209946_10918843	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDNNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVGATF
Ga0209946_1095241	Ga0209946_10952411	F066493	SREFDDGLIDVADELVSEYSAEGAIDRLQRRRESTRSDELADRCLEAIAYIRREVQDDT
Ga0209946_1108760	Ga0209946_11087601	F094957	MKALTQYMDQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILTKDGTLTRAEVEQRTNTWLDAITELDAIEQELTA
Ga0209946_1113385	Ga0209946_11133851	F066711	VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKNYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFC

Scaffold ID

Protein ID

Family

Sequence

Ga0209946_1015261

Ga0209946_10152611

F032166

EDAIELLETPADEWRDLDDGFNEVEEAEELLDFQRRTQGQIEAQGLGENYLTDERDMTKREAASIRWAIDPDTEREWL

Ga0209946_1015352

Ga0209946_10153521

F089905

MRTVREIEQDIREAEEAQAETEFSSTSWDSLNAEITGLHRELKRATYHWDRLRLCGMMGVDTYG

Ga0209946_1015813

Ga0209946_10158132

F096726

MTRDEWIDPADTEASIREHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSQSQYDPITVRFVEDGGE

Ga0209946_1021435

Ga0209946_10214353

F038111

TIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV

Ga0209946_1029599

Ga0209946_10295992

F089940

MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDEWYE

Ga0209946_1047733

Ga0209946_10477331

F094957

MKALTGYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDAIEQELTA

Ga0209946_1047744

Ga0209946_10477442

F029568

IEQHSGYGVLFKTSTGEPMVMGGVFNDGRYPSNVAKQINRLYTFPKFRMTRSDMTDGFRCTCKLIDALSAVNDYEIYLITMQNRPNRKNKGFWNLWCKHMNIASKGAWNLGEGYIQTCPWNVQKCWQNFVWQEKKEGTFREWWPKTIDHVEWLSLEEGK

Ga0209946_1050186

Ga0209946_10501864

F089905

REAEEAQAETEFSSTSWDSLNAEITGLHRELKRATYHWDRLKLCGMMGVDTYGR

Ga0209946_1050679

Ga0209946_10506792

F099972

MPKANKGKRLLNLPEASQYSASSYWRGVEHGRREGRAEVLKALESLSADIKKDVENKISD

Ga0209946_1056205

Ga0209946_10562052

F004256

LNYNYYWNDVPGIGLCRNNLVYTSLMSEDKKVFVQWFYNDGEYHKGQNEVLDPKLMGEKFNREIYYLKIMKENYPDLVPDYSLDLDDRKVFLQVDGKDFWNRAKCSVENYSNVIPDWKQQMLDILEKHKNLGLFKFSLHPSSYFIVNRKLKSINYFFTYHKNEGPISISDHASHIYSSRQDTMQKQIESMGISWNNPEPLEKLQILCFESFRSNYTDDFINQAKEIYYD

Ga0209946_1059316

Ga0209946_10593161

F094957

QEGNTMKALTGYMAQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILTKDGTLTRAEVEARTNTWLDAITELNAIEQELTA

Ga0209946_1069840

Ga0209946_10698401

F079661

MSNTTIQIPESVRDELKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIEQVTRR

Ga0209946_1076428

Ga0209946_10764283

F085171

MSEARKRTHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRCVEPHQIVIEARVDLSNVDLEDIDLGVD

Ga0209946_1084462

Ga0209946_10844622

F038111

MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIERE

Ga0209946_1091851

Ga0209946_10918511

F099972

MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDLER

Ga0209946_1091884

Ga0209946_10918843

F104555

MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDNNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVGATF

Ga0209946_1095241

Ga0209946_10952411

F066493

SREFDDGLIDVADELVSEYSAEGAIDRLQRRRESTRSDELADRCLEAIAYIRREVQDDT

Ga0209946_1108760

Ga0209946_11087601

F094957

MKALTQYMDQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILTKDGTLTRAEVEQRTNTWLDAITELDAIEQELTA

Ga0209946_1113385

Ga0209946_11133851

F066711

VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKNYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026114: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences