3300001429: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012

Overview

Basic Information

• IMG/M Taxon OID: 3300001429
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056281 | Ga0003488
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53974223
• Sequencing Scaffolds: 29
• Novel Protein Genes: 31
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis	1
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1
All Organisms → cellular organisms → Bacteria	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003369	Metagenome / Metatranscriptome	491	Y
F012088	Metagenome / Metatranscriptome	284	Y
F017249	Metagenome	242	Y
F021590	Metagenome	218	Y
F024915	Metagenome / Metatranscriptome	204	N
F025880	Metagenome / Metatranscriptome	200	Y
F034759	Metagenome / Metatranscriptome	174	Y
F035555	Metagenome / Metatranscriptome	172	Y
F047382	Metagenome / Metatranscriptome	150	Y
F050023	Metagenome / Metatranscriptome	146	Y
F051569	Metagenome	144	Y
F062277	Metagenome	131	Y
F077975	Metagenome	117	Y
F081920	Metagenome	114	N
F082778	Metagenome	113	N
F084865	Metagenome	112	Y
F086336	Metagenome	111	Y
F091040	Metagenome / Metatranscriptome	108	Y
F096253	Metagenome	105	Y
F100041	Metagenome	103	N
F102120	Metagenome	102	N
F102124	Metagenome / Metatranscriptome	102	N
F104078	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20202J14951_1000209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10362
JGI20202J14951_1000357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7730
JGI20202J14951_1001594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis	3347
JGI20202J14951_1001841	Not Available	3067
JGI20202J14951_1002244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2698
JGI20202J14951_1003081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2180
JGI20202J14951_1004214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1678
JGI20202J14951_1004217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1677
JGI20202J14951_1004234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1671
JGI20202J14951_1004334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1641
JGI20202J14951_1005655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1316
JGI20202J14951_1005811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1284
JGI20202J14951_1007664	Not Available	993
JGI20202J14951_1009178	Not Available	845
JGI20202J14951_1012513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	662
JGI20202J14951_1012921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	647
JGI20202J14951_1013722	Not Available	621
JGI20202J14951_1014349	Not Available	604
JGI20202J14951_1014682	Not Available	594
JGI20202J14951_1015238	Not Available	581
JGI20202J14951_1015871	All Organisms → cellular organisms → Bacteria	566
JGI20202J14951_1016466	Not Available	554
JGI20202J14951_1016470	All Organisms → cellular organisms → Bacteria	554
JGI20202J14951_1016828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	546
JGI20202J14951_1017376	All Organisms → cellular organisms → Bacteria	536
JGI20202J14951_1018363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	519
JGI20202J14951_1018967	Not Available	509
JGI20202J14951_1018989	Not Available	508
JGI20202J14951_1019552	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20202J14951_1000160	JGI20202J14951_10001605	F091040	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDXPAGPAK*
JGI20202J14951_1000209	JGI20202J14951_10002093	F051569	MTIITESVALTVRQSATTTYLAGPLDQVNAWVSQWGTSLQILGGTILAICMVLVGIKLGAKSVASNGASTGHREAVGAIFGLLIAGVLIGAALIVVPLFVGVGSNSGTTPAPAPAATPGG
JGI20202J14951_1000357	JGI20202J14951_100035713	F003369	MSRWNXVAMGQAGLTGSTRKVAEPVARSIARRTGRPEXEILSLIGAVFLAIXVVDFLRNVDSVIIAGRTGRRPPNAAPGAHP*
JGI20202J14951_1001594	JGI20202J14951_10015942	F003369	MSRWNFVAMGQAGLTGSTRKVAEPIARSIGRRTGRPEGQILSLIGAVFLAIAVVDFLRNVDSVIIAGRTDHRPPSTAPAAPGAHP*
JGI20202J14951_1001841	JGI20202J14951_10018414	F096253	MTPASRHGVRGRWLVLGVVLWLILASSITLEQGQESAAQWGSAATLAVLGILVLLAVCRVALIPVRGLVRRVRRWVAGRFR*
JGI20202J14951_1002244	JGI20202J14951_10022442	F102124	VADKGPPDEHVPYPATATAAAFRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEXALXPXHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20202J14951_1003081	JGI20202J14951_10030813	F012088	LRRSDQAVTWARTMLTPRRAVVIDCETTDLPGGVTGNDGYQNLRNSTRTRLFR*
JGI20202J14951_1003090	JGI20202J14951_10030904	F086336	LKRSDGAKVWSRVLSELAQVRVSVEWGAAPAWAGVLAGTARPGEALMGRAAALGSGSTTKIGR*
JGI20202J14951_1004214	JGI20202J14951_10042143	F062277	MTEPGAVLDAAHTAIADLAAVLVAVRAGLGCECVRAGSHLEMGEIDLLSARDAVEKARLEIDLAGPAVADVHVTVPLSVGWIVLRGTAPEGIPVTGGAEVRSRPPGRRPAGTRRPRSPGHGQGELFSVHDVTSCTLQLA*
JGI20202J14951_1004217	JGI20202J14951_10042173	F050023	YEHIAAGWRRTTGERRAGLLGELELLGCSCRRWCNPEDPDRAEIIALRAAISRLITQITIGLADPPLSCGS*
JGI20202J14951_1004234	JGI20202J14951_10042341	F017249	PIDQWGALPLPLQRLSPHSPHSLSRRARDLLSGDLGAHRDLPVDPDPEPVVTAPENPPVLTQPTRRAYDPADAAAAWDRRRRDLDDLAGIIDVLTDVERRADELNPRAAELVEGWP*
JGI20202J14951_1004334	JGI20202J14951_10043342	F102120	MSTINDQRLVREVDAAGPTVLEVHQAVRVARLSHCRHGRAREVHRGRVRRPPVSQYRPAVVVDTTTQSRLVRSDFARERRPVPTVVAAAVALSLLYVGFIRVFEPDMNQRILVIGVCVIAATAAVCLNAFTLGTATEPARNPERAILPVQHQGVSAGDIGESGPDNFKERR*
JGI20202J14951_1005655	JGI20202J14951_10056553	F050023	MRRWSGEAFVRVTAVRTRDEHIAAGWRRATGERRAGLLGELELLALQLPAVVQPEDPDRAEIIALRAAIR*
JGI20202J14951_1005811	JGI20202J14951_10058112	F081920	VPMSVVLEELTVCVGDGCANRFSDESGWEGRCPECMALWDDHAAGQHDPPVDGCXLCR*
JGI20202J14951_1007664	JGI20202J14951_10076643	F021590	MTATNPIDVRDMAIVHQTFRRAYGESTRLVRANPTPSAARVRFLADHIDFGVGMLHH
JGI20202J14951_1009178	JGI20202J14951_10091781	F082778	MSVPSTIQGPPGVRADLIAELVAVRDAVVGPDGMDPALSRSLSLEDDAVEMCGAVYALPDQFRERGRSGTPLMWPWPWSLFRSGMARRDELLLA
JGI20202J14951_1012513	JGI20202J14951_10125131	F084865	VTPSPSATRLTALLLLLLAGPAGARVAVLPLSGPRNASLERQLSASICGKLGCVPASSVMTSKRVDWEKVRRAHLDGVLVGGLSKSKRPQILEVSFLTPDAQRAYRTRVTIVNGRISSAELVEIRDGVGAAVRAAKAP
JGI20202J14951_1012921	JGI20202J14951_10129212	F025880	PKVNTDRTSLPGLLFALDRPPRPHTPYVHQPNVPMQRRGETVMDHVKIEIGLGRFEAVTIIGPQHDSSVHESVAGALVWLSGRFIASVMSTEVEVLNCTAAIFDVDAEEVMVQWHGSSDELADLLDRLAK*
JGI20202J14951_1013722	JGI20202J14951_10137222	F100041	YRRVKEAWKDATEARQITMLDDLQDLLDGIGFDDDEEYELRGRVERLITEIEDELGIDESEP*
JGI20202J14951_1014349	JGI20202J14951_10143492	F017249	RDLLSGDLGAHRDLPVEPDAEPETIAPESRPMAAPPRSAYGAAEAEAALERRRRELEDLAGMVDVLADVERRADELNRRAAELADGWL*
JGI20202J14951_1014682	JGI20202J14951_10146821	F077975	RGPAAPPGRAERDEMTTHEEHVSAAEDATTGPATTPVKDLGDAAAAADSGVICQAGSVEIGIGQDGADPFDATLLLAGTDPQGREVAVWIRLTPTTINDLTDQLTQVLVAQQQILGGNSLHRTTDDVDTDRTAADEDAQDTGEGRAKRFLDPLGIRHLKDRSPRTTVMLGVAIASLMLLAFVLQHIRG*
JGI20202J14951_1015238	JGI20202J14951_10152381	F077975	MTTHDEHVSAAADATGQETTQITDLGDAAPAAVICQAEVVDVGLAGAGTDPFDATFLLAGTDPQGREIVVWIRLTPTTINDLIDRLGEVLVAQQDILGINRHQSTTDDVGPDRDNTDENDPDPGEGRVKRFFDPMGIRHLKDRSPGTTVVLGAAIASLVILAFVLQLLRG*
JGI20202J14951_1015871	JGI20202J14951_10158711	F081920	AGCAGFAADQGVVPMNVVFEELTFCVGDGCVNRFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR*
JGI20202J14951_1016466	JGI20202J14951_10164661	F051569	SATTTYLAGPLDQVNSWVAQWGTSLQILGASVLAICVVLVGIKLGAKSVASQGASTGHREAIGSIVGLVIAGVLIGAALIIVPIFIGVGSNSGTTPPAPAPAPAATGGG*
JGI20202J14951_1016470	JGI20202J14951_10164702	F035555	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAXGSADDHQ*
JGI20202J14951_1016828	JGI20202J14951_10168281	F034759	SVCQRVWVEVRDNDLMGNSELTAPPRTRYPGTFCFLVHDGRTARFSLEPDEPSLKPFASLVLRRSKHASGRHLVSYGRSSPDYDEDQLRGRNDFLYLRAYGSGERHYGATVTDLTGRITLSWSAILGPNGARLDEVPSPRGVAQLASSPSRRQPPGPQ*
JGI20202J14951_1017376	JGI20202J14951_10173761	F035555	VHPMSQLAFDLDDAAPAPPPVIGRPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20202J14951_1018363	JGI20202J14951_10183631	F047382	MVFTPYLLSGIGALLFTVIGAVVGLLGPVLLFPVWRILGSRTVPLSMFASLGLGIFGGLTAGLLTPFFAPAAQMFYPEWWGFLLAAGNAGGVVFTGALIASVPARNAGY*
JGI20202J14951_1018967	JGI20202J14951_10189671	F104078	MDQQRSRAAATPTTTEQVPAPEQPVTGCLYEAGFHTTGPHPQGGVAIARSIDEARQRLADMLTFCDPTAAAVADITAFTRAGIVARYSGTVAELFADFNTGTPDRTVHARPLIGLTTPRPADGRR*
JGI20202J14951_1018989	JGI20202J14951_10189891	F102120	VHQAVRVARVGHCRHGRARAVRRGRTRRRPVSEFRPAVVVDTTTQSRVVRRDIPRKRRAVSTVVTAAVALSLLYIEFIRVFEPYTNQRFLVIGVCLIAVAAAVCLNAFTLGAVNEPARNPERAIR*
JGI20202J14951_1019552	JGI20202J14951_10195522	F024915	ELVPAADVRVGDCVIDEQGAPTVVTSTRWQGAGAGVVSIALSSRPDRRSHRGQDRVTRVILLG*