NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001400

3300001400: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012



Overview

Basic Information
IMG/M Taxon OID3300001400 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0084162 | Gp0056297 | Ga0003469
Sample NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26755785
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
Not Available7
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliensis1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → Butyrivibrio proteoclasticus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biomepolarpeat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000708Metagenome / Metatranscriptome926Y
F001491Metagenome / Metatranscriptome685Y
F002347Metagenome / Metatranscriptome568Y
F006022Metagenome / Metatranscriptome383Y
F006554Metagenome / Metatranscriptome370Y
F008517Metagenome / Metatranscriptome332Y
F012088Metagenome / Metatranscriptome284Y
F026747Metagenome / Metatranscriptome197Y
F026960Metagenome / Metatranscriptome196Y
F035555Metagenome / Metatranscriptome172Y
F040199Metagenome / Metatranscriptome162Y
F040359Metagenome / Metatranscriptome162Y
F045440Metagenome153Y
F056183Metagenome138Y
F056936Metagenome / Metatranscriptome137Y
F074176Metagenome / Metatranscriptome120Y
F081920Metagenome114N
F083114Metagenome / Metatranscriptome113Y
F083423Metagenome / Metatranscriptome113Y
F084877Metagenome / Metatranscriptome112N
F087938Metagenome110Y
F098277Metagenome / Metatranscriptome104Y
F102124Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20183J14883_100140All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis2443Open in IMG/M
JGI20183J14883_100612All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1588Open in IMG/M
JGI20183J14883_100867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1374Open in IMG/M
JGI20183J14883_100930Not Available1331Open in IMG/M
JGI20183J14883_101248All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41157Open in IMG/M
JGI20183J14883_101277Not Available1143Open in IMG/M
JGI20183J14883_101367Not Available1102Open in IMG/M
JGI20183J14883_101494All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliensis1054Open in IMG/M
JGI20183J14883_101704All Organisms → cellular organisms → Bacteria988Open in IMG/M
JGI20183J14883_101824All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria946Open in IMG/M
JGI20183J14883_101852All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria938Open in IMG/M
JGI20183J14883_102246Not Available841Open in IMG/M
JGI20183J14883_103321All Organisms → cellular organisms → Bacteria → Acidobacteria704Open in IMG/M
JGI20183J14883_104472All Organisms → cellular organisms → Bacteria → Acidobacteria621Open in IMG/M
JGI20183J14883_104540Not Available617Open in IMG/M
JGI20183J14883_104889All Organisms → cellular organisms → Bacteria601Open in IMG/M
JGI20183J14883_104952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → Butyrivibrio proteoclasticus598Open in IMG/M
JGI20183J14883_105150All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes589Open in IMG/M
JGI20183J14883_105181Not Available587Open in IMG/M
JGI20183J14883_106686All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
JGI20183J14883_106851All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales532Open in IMG/M
JGI20183J14883_107389Not Available517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20183J14883_100140JGI20183J14883_1001402F000708MTKSDPTLAQIAAQFTQFDVAKSRGGYMILDRRTSSPVARLHPIPGADRFELFYWSNAKGRWTTLGNIGRLNLMIESAHEIVENDPIFRIPRSR*
JGI20183J14883_100612JGI20183J14883_1006121F074176MPVHHGSRSDQDERLPPPGPEGLQCNPEQLVQGSHSTARSLRVQSQQLLTQSQVFEDEVLPGTESADHPPKEMPKRYDHGKNLTGTIRIELCTKSYILRVYDVLARHRSRKGSAQESGEGRILRGFL*
JGI20183J14883_100867JGI20183J14883_1008673F081920VLEELTSCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
JGI20183J14883_100930JGI20183J14883_1009302F012088MITATADAPAWLRRSDQAVTWARTMLTPRRAVVIDCETTDLPGGVTGNDGYQNLRNSTRTRLLR*
JGI20183J14883_101248JGI20183J14883_1012481F026747KAAMWMPTRRKNGEGRDDWEEPGAGARYRITVRTSRSTGVVSTACKEGNLRQWGRPGMVGESRAPNGIFRMSDHLGVGEGQRYPRSRVMPVEGRTLASGVLEKKERSGDWR*
JGI20183J14883_101277JGI20183J14883_1012772F056936MLTNEVTVNIYLLAIILGLSVFVGFAMRAKIILRYRAKIEKLEREILNNCAHILELERETLQMETKFQDIKIPVITMKTPNKQAEPTIQKVPDISLRKL
JGI20183J14883_101367JGI20183J14883_1013672F083423AQPVGTWTSWAIALPGADWEEHDEQAVWEEIDDD*
JGI20183J14883_101494JGI20183J14883_1014942F084877KLRRLTRRWITLAESRGSEGGGLWVTHLTWTRKREGTAAWWESVERCEGVEGAAAQGPCDMAKTRLFEAQFPVMEMCILRHTTPGAEPPASGEFPLLRPNPSGWWAVSNELTQGNGKAAYVTLDTSSAEEFGIT*
JGI20183J14883_101704JGI20183J14883_1017041F056183MDRSINLALDVDADASTVFQALSTTAGQRGFWTADCEVGADSARFGFTAAPVDL
JGI20183J14883_101824JGI20183J14883_1018243F098277MTDVDSNEIEFQCPSCGNDLKLTMSQLKVGRHMICPGCSIGINIDTDRLANAAEEIQKAIEKSPAEITIKFFR*
JGI20183J14883_101852JGI20183J14883_1018522F040199MIARCMMTLPGAAPAAIFTAMFVVTEADAAAIRATYEQEGELSAAIELRRRFPGIIDNAKARECARSIAGWTPQPLAAATVTPLRRRKKRL*
JGI20183J14883_102246JGI20183J14883_1022461F102124VADKGPPDEHVPYPATATAAAFRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEQALQPLHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20183J14883_103321JGI20183J14883_1033212F026960TNGRPRARRYIEFLRGQFPDAQELKKEESRIILP*
JGI20183J14883_104472JGI20183J14883_1044721F040359YSVAFNRLRGQLNVRADEVRLSNAELRFFEPGTEKSGAGIVTGNVAYRFADKSLSTELVGASLPLENFRSIKSAGLPVGGQITFRMKSSGLVTRPVAEGTFRLVDLRLATEVIGSLDGELHSDGNEASLKLKSAMSTGAISGSVKLGLSDPMPLDGTVSIQNINLDPYLLSALHLDKFAGHGTADGDITVKGELRHRENLVVDGNFR
JGI20183J14883_104540JGI20183J14883_1045403F035555VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLAPVIARHHAAAGSADDDE*
JGI20183J14883_104889JGI20183J14883_1048891F002347KSRLLEQIAAIPVMERGKLSRYSFKDRSNASGPYHKLQRWQDGKNHTRYVSAAELPAVQTALAGYAQFQQLTGQYADLVIEQTRQNLAGSKKKRSRPKSSSPRKKKSSN*
JGI20183J14883_104952JGI20183J14883_1049521F087938KYRVRIAGAGVLEDLRKRIPQQSEGLRERTMKQMLGNFLTLIGLLAVSVSCLAQNGGSSASHPPADSSQPALKMQTLTAALSGEWSLDVKWETNASMPNGLVNTGEETWRAGPGGHTLLEEEHLRSHQGDVFLFGVVWWNSTKKNLQGLECQNLLPQTCDVKGALNDITMSWDGKQFVIDEIETSNTGKKSIWHEVWSD
JGI20183J14883_105150JGI20183J14883_1051501F083114MKQELDHSVKEPAKVFLKLAVFGFALIGFAYISLIIMGTALKAIH*
JGI20183J14883_105181JGI20183J14883_1051812F006022VTSNEIAIYAVETKAIIQILWGLLLIMSITLVSVSIVYVLLRLKLRSYRRREGQMSRQIAARAEEIVRLEERLAAHTDLEEGVEELKAEVRRADAIRGKTEDRLVAQNAEIEALRARFAE
JGI20183J14883_106686JGI20183J14883_1066862F006554DGRPTPGSVQVLRESLASEASIPLGGPVAGLISLNLQVR*
JGI20183J14883_106851JGI20183J14883_1068512F045440SPSTPGTVKDRRKELRPATRLQLLTVSGGLSGTSSSDLERELTALYVSQPLRWQTFMDEAQVLIDAVSENNSGFAETIAPGEG*
JGI20183J14883_106869JGI20183J14883_1068691F001491VIDAYPKALQNYQTGENRAKTARKQGMSPEPNAFEQAVARALRDNLERIQRSSDELNQAVNDVVAACSSSRPSNALPPMLRAQTGAAALAASLEVLSRFITLALNPSPRTAFEEKITQAIGLQAPESPAEAVRPAPQVPQPK
JGI20183J14883_107389JGI20183J14883_1073891F008517VSRAVIIGWSIELAGTALWLYGYFATGNPSLFDWHAYTPWWIADYLPNIESEIGMALVFAGMVPLY

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