Basic Information | |
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IMG/M Taxon OID | 3300001400 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0084162 | Gp0056297 | Ga0003469 |
Sample Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 26755785 |
Sequencing Scaffolds | 22 |
Novel Protein Genes | 23 |
Associated Families | 23 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
Not Available | 7 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliensis | 1 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → Butyrivibrio proteoclasticus | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | polar biome → polar → peat soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000708 | Metagenome / Metatranscriptome | 926 | Y |
F001491 | Metagenome / Metatranscriptome | 685 | Y |
F002347 | Metagenome / Metatranscriptome | 568 | Y |
F006022 | Metagenome / Metatranscriptome | 383 | Y |
F006554 | Metagenome / Metatranscriptome | 370 | Y |
F008517 | Metagenome / Metatranscriptome | 332 | Y |
F012088 | Metagenome / Metatranscriptome | 284 | Y |
F026747 | Metagenome / Metatranscriptome | 197 | Y |
F026960 | Metagenome / Metatranscriptome | 196 | Y |
F035555 | Metagenome / Metatranscriptome | 172 | Y |
F040199 | Metagenome / Metatranscriptome | 162 | Y |
F040359 | Metagenome / Metatranscriptome | 162 | Y |
F045440 | Metagenome | 153 | Y |
F056183 | Metagenome | 138 | Y |
F056936 | Metagenome / Metatranscriptome | 137 | Y |
F074176 | Metagenome / Metatranscriptome | 120 | Y |
F081920 | Metagenome | 114 | N |
F083114 | Metagenome / Metatranscriptome | 113 | Y |
F083423 | Metagenome / Metatranscriptome | 113 | Y |
F084877 | Metagenome / Metatranscriptome | 112 | N |
F087938 | Metagenome | 110 | Y |
F098277 | Metagenome / Metatranscriptome | 104 | Y |
F102124 | Metagenome / Metatranscriptome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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JGI20183J14883_100140 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 2443 | Open in IMG/M |
JGI20183J14883_100612 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1588 | Open in IMG/M |
JGI20183J14883_100867 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1374 | Open in IMG/M |
JGI20183J14883_100930 | Not Available | 1331 | Open in IMG/M |
JGI20183J14883_101248 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1157 | Open in IMG/M |
JGI20183J14883_101277 | Not Available | 1143 | Open in IMG/M |
JGI20183J14883_101367 | Not Available | 1102 | Open in IMG/M |
JGI20183J14883_101494 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliensis | 1054 | Open in IMG/M |
JGI20183J14883_101704 | All Organisms → cellular organisms → Bacteria | 988 | Open in IMG/M |
JGI20183J14883_101824 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 946 | Open in IMG/M |
JGI20183J14883_101852 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 938 | Open in IMG/M |
JGI20183J14883_102246 | Not Available | 841 | Open in IMG/M |
JGI20183J14883_103321 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 704 | Open in IMG/M |
JGI20183J14883_104472 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 621 | Open in IMG/M |
JGI20183J14883_104540 | Not Available | 617 | Open in IMG/M |
JGI20183J14883_104889 | All Organisms → cellular organisms → Bacteria | 601 | Open in IMG/M |
JGI20183J14883_104952 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → Butyrivibrio proteoclasticus | 598 | Open in IMG/M |
JGI20183J14883_105150 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 589 | Open in IMG/M |
JGI20183J14883_105181 | Not Available | 587 | Open in IMG/M |
JGI20183J14883_106686 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 536 | Open in IMG/M |
JGI20183J14883_106851 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 532 | Open in IMG/M |
JGI20183J14883_107389 | Not Available | 517 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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JGI20183J14883_100140 | JGI20183J14883_1001402 | F000708 | MTKSDPTLAQIAAQFTQFDVAKSRGGYMILDRRTSSPVARLHPIPGADRFELFYWSNAKGRWTTLGNIGRLNLMIESAHEIVENDPIFRIPRSR* |
JGI20183J14883_100612 | JGI20183J14883_1006121 | F074176 | MPVHHGSRSDQDERLPPPGPEGLQCNPEQLVQGSHSTARSLRVQSQQLLTQSQVFEDEVLPGTESADHPPKEMPKRYDHGKNLTGTIRIELCTKSYILRVYDVLARHRSRKGSAQESGEGRILRGFL* |
JGI20183J14883_100867 | JGI20183J14883_1008673 | F081920 | VLEELTSCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR* |
JGI20183J14883_100930 | JGI20183J14883_1009302 | F012088 | MITATADAPAWLRRSDQAVTWARTMLTPRRAVVIDCETTDLPGGVTGNDGYQNLRNSTRTRLLR* |
JGI20183J14883_101248 | JGI20183J14883_1012481 | F026747 | KAAMWMPTRRKNGEGRDDWEEPGAGARYRITVRTSRSTGVVSTACKEGNLRQWGRPGMVGESRAPNGIFRMSDHLGVGEGQRYPRSRVMPVEGRTLASGVLEKKERSGDWR* |
JGI20183J14883_101277 | JGI20183J14883_1012772 | F056936 | MLTNEVTVNIYLLAIILGLSVFVGFAMRAKIILRYRAKIEKLEREILNNCAHILELERETLQMETKFQDIKIPVITMKTPNKQAEPTIQKVPDISLRKL |
JGI20183J14883_101367 | JGI20183J14883_1013672 | F083423 | AQPVGTWTSWAIALPGADWEEHDEQAVWEEIDDD* |
JGI20183J14883_101494 | JGI20183J14883_1014942 | F084877 | KLRRLTRRWITLAESRGSEGGGLWVTHLTWTRKREGTAAWWESVERCEGVEGAAAQGPCDMAKTRLFEAQFPVMEMCILRHTTPGAEPPASGEFPLLRPNPSGWWAVSNELTQGNGKAAYVTLDTSSAEEFGIT* |
JGI20183J14883_101704 | JGI20183J14883_1017041 | F056183 | MDRSINLALDVDADASTVFQALSTTAGQRGFWTADCEVGADSARFGFTAAPVDL |
JGI20183J14883_101824 | JGI20183J14883_1018243 | F098277 | MTDVDSNEIEFQCPSCGNDLKLTMSQLKVGRHMICPGCSIGINIDTDRLANAAEEIQKAIEKSPAEITIKFFR* |
JGI20183J14883_101852 | JGI20183J14883_1018522 | F040199 | MIARCMMTLPGAAPAAIFTAMFVVTEADAAAIRATYEQEGELSAAIELRRRFPGIIDNAKARECARSIAGWTPQPLAAATVTPLRRRKKRL* |
JGI20183J14883_102246 | JGI20183J14883_1022461 | F102124 | VADKGPPDEHVPYPATATAAAFRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEQALQPLHEWGQEWSTVQRAITDTFVPPDAQLDP* |
JGI20183J14883_103321 | JGI20183J14883_1033212 | F026960 | TNGRPRARRYIEFLRGQFPDAQELKKEESRIILP* |
JGI20183J14883_104472 | JGI20183J14883_1044721 | F040359 | YSVAFNRLRGQLNVRADEVRLSNAELRFFEPGTEKSGAGIVTGNVAYRFADKSLSTELVGASLPLENFRSIKSAGLPVGGQITFRMKSSGLVTRPVAEGTFRLVDLRLATEVIGSLDGELHSDGNEASLKLKSAMSTGAISGSVKLGLSDPMPLDGTVSIQNINLDPYLLSALHLDKFAGHGTADGDITVKGELRHRENLVVDGNFR |
JGI20183J14883_104540 | JGI20183J14883_1045403 | F035555 | VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLAPVIARHHAAAGSADDDE* |
JGI20183J14883_104889 | JGI20183J14883_1048891 | F002347 | KSRLLEQIAAIPVMERGKLSRYSFKDRSNASGPYHKLQRWQDGKNHTRYVSAAELPAVQTALAGYAQFQQLTGQYADLVIEQTRQNLAGSKKKRSRPKSSSPRKKKSSN* |
JGI20183J14883_104952 | JGI20183J14883_1049521 | F087938 | KYRVRIAGAGVLEDLRKRIPQQSEGLRERTMKQMLGNFLTLIGLLAVSVSCLAQNGGSSASHPPADSSQPALKMQTLTAALSGEWSLDVKWETNASMPNGLVNTGEETWRAGPGGHTLLEEEHLRSHQGDVFLFGVVWWNSTKKNLQGLECQNLLPQTCDVKGALNDITMSWDGKQFVIDEIETSNTGKKSIWHEVWSD |
JGI20183J14883_105150 | JGI20183J14883_1051501 | F083114 | MKQELDHSVKEPAKVFLKLAVFGFALIGFAYISLIIMGTALKAIH* |
JGI20183J14883_105181 | JGI20183J14883_1051812 | F006022 | VTSNEIAIYAVETKAIIQILWGLLLIMSITLVSVSIVYVLLRLKLRSYRRREGQMSRQIAARAEEIVRLEERLAAHTDLEEGVEELKAEVRRADAIRGKTEDRLVAQNAEIEALRARFAE |
JGI20183J14883_106686 | JGI20183J14883_1066862 | F006554 | DGRPTPGSVQVLRESLASEASIPLGGPVAGLISLNLQVR* |
JGI20183J14883_106851 | JGI20183J14883_1068512 | F045440 | SPSTPGTVKDRRKELRPATRLQLLTVSGGLSGTSSSDLERELTALYVSQPLRWQTFMDEAQVLIDAVSENNSGFAETIAPGEG* |
JGI20183J14883_106869 | JGI20183J14883_1068691 | F001491 | VIDAYPKALQNYQTGENRAKTARKQGMSPEPNAFEQAVARALRDNLERIQRSSDELNQAVNDVVAACSSSRPSNALPPMLRAQTGAAALAASLEVLSRFITLALNPSPRTAFEEKITQAIGLQAPESPAEAVRPAPQVPQPK |
JGI20183J14883_107389 | JGI20183J14883_1073891 | F008517 | VSRAVIIGWSIELAGTALWLYGYFATGNPSLFDWHAYTPWWIADYLPNIESEIGMALVFAGMVPLY |
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