3300001451: Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet Assemble

Overview

Basic Information

• IMG/M Taxon OID: 3300001451
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090745 | Gp0055802 | Ga0012466
• Sample Name: Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet Assemble
• Sequencing Status: Permanent Draft
• Sequencing Center: Cornell University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1986802579
• Sequencing Scaffolds: 27
• Novel Protein Genes: 27
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AM30-16	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. BP1-148	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Dipodascaceae → Yarrowia → Yarrowia lipolytica	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Langston, Oklahoma, USA
• Coordinates
  • Lat. (^o): 35.453976
  • Long. (^o): -97.515884
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008062	Metagenome / Metatranscriptome	340	Y
F008732	Metagenome / Metatranscriptome	329	Y
F009724	Metagenome / Metatranscriptome	314	Y
F014211	Metagenome / Metatranscriptome	265	Y
F023997	Metagenome / Metatranscriptome	208	Y
F025615	Metagenome / Metatranscriptome	201	Y
F026441	Metagenome / Metatranscriptome	198	N
F032082	Metagenome / Metatranscriptome	181	N
F034749	Metagenome / Metatranscriptome	174	N
F037488	Metagenome / Metatranscriptome	168	N
F042636	Metagenome / Metatranscriptome	158	N
F045443	Metagenome / Metatranscriptome	153	Y
F056169	Metagenome / Metatranscriptome	138	Y
F059440	Metagenome / Metatranscriptome	134	Y
F067228	Metagenome / Metatranscriptome	126	N
F068247	Metagenome / Metatranscriptome	125	N
F077963	Metagenome	117	N
F079361	Metagenome / Metatranscriptome	116	Y
F080619	Metagenome / Metatranscriptome	115	Y
F086330	Metagenome / Metatranscriptome	111	Y
F089572	Metagenome / Metatranscriptome	109	N
F091029	Metagenome / Metatranscriptome	108	N
F106163	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
yes_10317087	Not Available	1452
yes_10320243	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AM30-16	1822
yes_10326903	Not Available	607
yes_10425796	Not Available	551
yes_10466529	Not Available	795
yes_10531815	Not Available	752
yes_10694564	Not Available	655
yes_10810107	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. BP1-148	2956
yes_10965992	Not Available	893
yes_11198627	Not Available	653
yes_11237411	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	707
yes_11256500	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Dipodascaceae → Yarrowia → Yarrowia lipolytica	684
yes_11461520	Not Available	1098
yes_11477540	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	650
yes_11500906	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1284
yes_11509046	Not Available	594
yes_11944249	Not Available	624
yes_12218501	Not Available	639
yes_12289407	Not Available	1022
yes_13078054	Not Available	922
yes_13649093	Not Available	582
yes_13652095	Not Available	516
yes_14160688	Not Available	696
yes_14527173	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	595
yes_14803319	Not Available	532
yes_14990577	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1090
yes_17138225	Not Available	767

Sequences

Scaffold ID	Protein ID	Family	Sequence
yes_10317087	yes_103170871	F037488	FLNYFKIFQTLYDTHPPTQYANYFHCTSLFDLEKVNKINNNDSFLKAIATFINEVTFSKKKIFIEFSTEDSVANAIKVLKMLKDPKKYLYCLHMARPKVADIDFIKFVEIFEYIDNIEDVHFFEDCAKKIIEDKINVGKLYYVNLDQIPVDKVIEYSTQYPNKIKELYAFENKEYDKIKKVCDLNSETLIRIPNCKLDLYPNLKNVEIVTINSEPLPDPLPDNFNYSSVKNLETIFIEDDSEEKTNFAIELINKCPNLEKVSFATFSELTQEQFLKIFSTTKSNKIKEICVTCQEFEEGIDFAPIFKNLPKLSKFRVDCHCSMDFLYALHPIISCEKVAPTYPILEQLINNYLNEDEDNYLKGEFPNDFEPFFEYFKKKENIMNRFEKIWGDSASTFELPYFSHLIINKSAEIAKFNVKKVGTVHVLCPVDDKIKQFLEKVKPDFIKVKEGKLDDSVSNATKIVYCADTGDMKF*
yes_10320243	yes_103202433	F077963	MKLLKRILDFFNVHPDKNQRWTLSTLFIVGLLYTYVQPAITKAWVTDLPAEWLAFQSLVYSVVGLFIGMIWKGVMRRWAIRWFTVLCIIESAAGFIVGMWLTFVNYNVWVLAIACLLYGTLVSEFISKCLMTFRPKLWNEKEREIYDNNNDVVCGIYCIVGYVCSLLFMPSLKVAMFVWGLTCAIDNIGWLVVYHKNRDKFCEIENEKSN*
yes_10326903	yes_103269031	F042636	EMFIPDPLREKMFKDIYKRGHLDRYTCEFNFIPSVLPEYYIKGEIDDYIMTHPIEWKLILLKKGVNSDFGMDEISVEKVEKDDETTFIFTFPKPKETPNCFYAMLIFDKDKKWSYYTLELDYGSSTVFKDGGGIICGQRGYDHLNYGRRCKEDLDEFQKKVKDIRENKPFDLVENYGDLDIKKMQEMGCEIV*
yes_10425796	yes_104257961	F032082	KEETMLRSYNETFYSSLKSLSFIKDPLPLEEKLMYHFEQNDSASVSSTIGQLESTLQELLVKNKEIKEKIIELNGEIKVLRGEINKIEEHYGVFRPEIKILSEAIKDFFEKQKLENYRLKDEITLLEKEKNEIQQRIYDSLGYLNKLEKIVGIKSKTYTYYYDQTMSEGELASKFLIKDEDI*
yes_10466529	yes_104665291	F045443	DSSPLAISYGIEPDYFRTDQTYNIFPKFSFKKENIPLGNSIALCLTIQWGELERGKHYHVMKNVQGFSKCSTANEQFIWNEEDSIYGVDIPAWVQIINEAECKNDEECADYCKEKFGGAYIKGKNKNKCYSYQILHGICLVLKYNPLKDEYSFHGGCYPNNETYRLVPGIYGEEVDFNDLKIEVREYSDPIIQAGEWTNYRYRFGQYWRYVSFVFKFLLLITLGVLAYVSYDVYKTRLKFRGAPNLISNEENSGMPGNFGF*
yes_10531815	yes_105318152	F056169	MTAKEAIFEARKYGLEEEIRQELAAGLSPEEALEEWDIF*
yes_10694564	yes_106945641	F034749	GLISNVILITATAGFGNYSMGFINSYFTDVNGGQTKILKNKILFTLTGPICAFFIIIVLSCFIGNYYSKTTPAIMFTLYLIVTITGNVIPSLSTPRDLSYAALIYSIASSTMGPYVQGTNLSAGTPSKKPFGVTINIIAGIILGQIPAPYIYATLLKNFPKEEVLNIFMRFLIVGAIFNFLMMVFRFKEYPPEKEKPKPAIELSDK*
yes_10810107	yes_108101075	F059440	MNRKEREAEFRAKIAKLDAYVEEMNAKGNLTNEEWGEVWSAMLQTNRYLRAIGAPESEMYDI*
yes_10965992	yes_109659922	F079361	MIYFTIAKNECGYLIDSISNDYTTLRNKFPDEKIYQSDKPIVSIYVLKDQLNEIQS*
yes_11198627	yes_111986271	F008062	MNKFLVVLLLIGSCLNIKLREVPVDDIYAAVVAIFKGMAETEEATCAGVLVNQKEKILEIVYATIDEVKAGTELSVALQNAVIKLMAVDGLVSECNVLAMPAIYTKVTSKDGIVEMLQTGIDNIDVLFDYGLKIKDAIADKDYNLAAENLGHIVSIVLDFQVSR*
yes_11237411	yes_112374111	F086330	QRLFLTNEDGEIFVFSTLVYPPTMVKSLRTSTCSCIRAAHLDNSSQLFFTGSVNGFITIINLGIPGRERLISEMSRFNIGKMKIRVCVGNPKNNELITGDQEGRVTVWSLKTGRPVYIWEAHPKSAITKMWFQEEENLLWTGGKDLKINIWELPAKWVSNEAQSFEETQYKKITAKISQDIISKKKYRKDKNGEYDSDDDDLNGWNFKEY*
yes_11256500	yes_112565001	F086330	NRRIFLTTEDCELLVYSIMTYPPNMVRNLKISALSCIRAAYLDNQSQLFFTGSVNGLISIINIGAPGRERLITEMTSFSIGKMKIRVCVGNSKKNELITGDQVGRVTVWSLKSGKPIYLWEAHPKQAITQMWLQEEENLLWTGGKDMKINIWQLPEKWVSNEAEDYEVNKLKDFTAKIAEKKIIKKYRKDRDGEIDSDEDDLNGWNFREY*
yes_11461520	yes_114615201	F023997	MITLKNWKEQQPEVVYFVQTNFQGDEFMKKLVRSEMNKEAWDKTVAKYSDREIYKVITENHSGELHRWVYFKEGE*
yes_11477540	yes_114775401	F091029	EDPKVKEKTEKKLKDFRKYIVDKGVVLMFVKVLLSLKYAEKKPRNPIKIIRDYFGKYHDPRWDEMSALKEKIILFNNENAKLLEKAMNLEDELKNLKRTKRIDKLFDSFELDKNGLISTKTIIELLTGNKKFDVDEKFDKEGLIKFIESTVETHSEDENLLLESLESALQGNTVFKEDLENPIYLKIVEYFKGLKEANKEVKKAEKKK*
yes_11500906	yes_115009062	F106163	MKRFIIIAAAALLLFSSCTGRKKHYFSNISTGETYLCAIGFDEDSQKDYTVVTDVLYAGTDTSSRYKMVFYMPDGWDDTYPLFLDKYVPIEGGQPWTAYKGSPVAEAALKEGNMIVVLVACDEETAIPDVLLAEEFLKKNDADLPGDSKIILTSAYFDFE*
yes_11509046	yes_115090461	F025615	LQIVAFSTNDTTQTPNDIINIFLGQQEHTIIKKSRHSIAFQTNIKNSKKKTKIMVCSILNLTREYTGINDVNCYVLFINLEKQDSMEKLEEIISYARDYCELGKKIYVLGMISGNEGESRQINKSDITKVLDQVQANYEYKEFNLSKVKEVCDTIMEVLDYSSKHSINGESEIDKEGGKANSCVIF*
yes_11944249	yes_119442491	F067228	MCIRDRLNNGENTIDLNFIRSLLSINNNNYSEIFLKFITQYKLIESMKSGKFNKDTLHNVVFEEEEFVNFITGKQTKDLLFEDNLDLPQKRFKIDEYAKLYELIGGDQQGISKISLKQNIEEVLKSLCKEEDIENLSELAEEQAEEIIELLGSNEGSLSPEDFMNIMTSNTPFPDKLEDTF*
yes_12218501	yes_122185011	F025615	IQIVAFSTNDKQQTPNDVINIFLENNNHIIIKKNRNAIAFSTHLANSSKSSKIMICSILNLTREYTGISDVNCYILFIDLEKEDSKDKFESIINYSKDYCELTKKVYVLGMVNGDKTKIISKDFITKSLDQAQIDYEYKEINLSKAKEVSDIIMEILIYSSKHSISGDDEVDKDGGKDGSCEIF*
yes_12289407	yes_122894071	F026441	LEFFNEEEDTDFLMFEKNKVYIDYNENLFNFHKVDEKEKIIEIDLDNCEIKGEADKDNDAEDEIDAKTDLVTLNYFPLCISHCNITLCYEQDLPQVLSNELIVQFMNIYQIADNKSLICGYDSLNAGCVINQLHFEFLMLDDFSNEINKLPIEEREAFPIFETKLRYKNDKEISMFDGTTSIKVSQIKEPVVCWKIEAKTSDGESNDISAMENLYQNSISHIVNLILTKLTDKEIPHNITLTDQGKTFYVIPRKPEEKKHKYNSCWNDLSGLITCREKQSYDEIDEEKINKFLKEEISLEKGKFDELNENIISQIDSVFEIIKF*
yes_13078054	yes_130780541	F089572	AYYDYDFRAKLLKFKNSCEFKKIKWIFYFDNDEIFKIKINLYKVTSDNSTVLDYIISYVPKLGQSILEQVLPELNNNQIFKNVEESIQKQFNALYQYESCLIQGSPEEIWNILSDNSKLVLIAPNNECFLPININDKKVGETFEIKMNINDKESNIEVKLDLLRKKMGNKWIFCYTILGGKPFNILKQSLFVQLTKINNNETQLSISTKIYENINSEMIIYLSNKKKYVLTSLKDYFLNFYTPLNQTNK*
yes_13649093	yes_136490931	F014211	VNTLEQIIPKMRYQMYQKRVHSLDVVNQIVRTEGKYYSIADLDIFFAKIGVYLKSQEVTELLNHCKHSKTQIDLIRMVNLLKTEVPEDIICILNLIFDKLSGNQQAMDVEELLQHLNENEYPQIELMNKNLKIVNENIIKGFKEIIGDNKIITKEQFVDFHKNIYWVIPDYKIKEFKNRLHLMWGIRRLR*
yes_13652095	yes_136520951	F080619	MTTTYRLNNQNLKNAFDLLDYRQEGELDIPAIMENLKKMGYDKSHPELFDLINSLGNDKLNYSDYVTTLSDIMNQKDEDAGLQRMYDLLIYNPKIQFIDYETLKKISQETGHSLTDMEIQFALNEIGDGKTIPIESFIKFMKSN*
yes_14160688	yes_141606882	F009724	NEDNVKEWMKDYLKKKKLTMPNDGAYIVIQSPVADTRERPYKVEKPKYEARTHSPEKFYVLRDATGNEVGREKTSKAAEQTAKEFVSDYKEDVTINYEWVSKEKNSLYATVKYTPSKGSKPCKLLVFGYPVLD*
yes_14527173	yes_145271731	F008732	RNILPKLRRTFFQTHKEKGFPYFSSSRVGSCSYVKVKNGQCLAIPFFILNRRGRTLNHFKTVPEKLYTSKSTYMMDFVKRGNMHCGMKNKPLLPYSMNSARSQLPINGIISGAAVNRSCLELGDNKLINRKQWKTSYRDFFRKPNYIPVSNMGIRSDMAKAAHAKLTHF*
yes_14803319	yes_148033191	F068247	TRLLEIREYGLRLERLRNETMKLIENSFNEIISVVKKRKTVLMTEIIDYFSEEKEKVNTDEKKWLDNQKIAEKIVALAKDSNDAKILLNAKFITDSLKELENKPEYRETKLLNVVDPSLHLDEEVTLSYEEILYYLSNYMTILEPNILEFNS*
yes_14990577	yes_149905772	F106163	MKRLLIICLGLLLLAGCKEKRYFKEIPGDNWLCQIGFDDGSKREFWVVSDVLYAGEDSTSRFKMVFYMPDGWDDSYPVFLDRYVPENDYVSAYTAYQGMPVAEDALKMGNMIVVLVAYNEWTAIPDILLAEHFLKEHDDDIPGDSRNILTAADFDFEPVVEIE*
yes_17138225	yes_171382251	F045443	IPLGNSISLCMNAHWGEIERGKHYEIMKPVKGFGKCSTVNDQFIWNEGDSTEGIDVPAWKQTSHEVDCSDEDCAEYCKQNFEGAFVNGVNKHICYSYETLDSICIVIKYDKLRDEYVYHGGCYPGNETYKMSPATLGEENKFNAVKIEIRDYSDPIIQAGEWTDYGYNFGHFWRYVSFLLKILSLAALGLLGYVAYDIYMTRKKYKGAPNDLIGGEEDKGMPGGNIGITM*