Sample 3300021540

Overview

Basic Information
IMG/M Taxon OID	3300021540 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118397 \| Gp0242250 \| Ga0214517
Sample Name	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	60007591
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	1
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: California
Coordinates	Lat. (^o)	34.4149	Long. (^o)	-119.841	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F039427	Metagenome / Metatranscriptome	163	Y
F046128	Metagenome / Metatranscriptome	151	Y
F056169	Metagenome / Metatranscriptome	138	Y
F057037	Metagenome / Metatranscriptome	136	Y
F075545	Metagenome / Metatranscriptome	118	Y
F079361	Metagenome / Metatranscriptome	116	Y
F086383	Metagenome / Metatranscriptome	110	N
F093056	Metagenome / Metatranscriptome	106	Y
F097585	Metagenome / Metatranscriptome	104	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214517_100310	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	21046	Open in IMG/M
Ga0214517_101150	Not Available	5863	Open in IMG/M
Ga0214517_102360	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	2855	Open in IMG/M
Ga0214517_103774	Not Available	1800	Open in IMG/M
Ga0214517_104631	Not Available	1487	Open in IMG/M
Ga0214517_106292	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	1122	Open in IMG/M
Ga0214517_107646	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	954	Open in IMG/M
Ga0214517_108135	Not Available	906	Open in IMG/M
Ga0214517_108227	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	898	Open in IMG/M
Ga0214517_110762	Not Available	725	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214517_100310

All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae

21046

Open in IMG/M

Ga0214517_101150

Not Available

5863

Open in IMG/M

Ga0214517_102360

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.

2855

Open in IMG/M

Ga0214517_103774

Not Available

1800

Open in IMG/M

Ga0214517_104631

Not Available

1487

Open in IMG/M

Ga0214517_106292

All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315

1122

954

Not Available

906

898

Not Available

725

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0214517_100310	Ga0214517_10031023	F086383	MTLHIALDGIYVNVNHIIVQKLVEYFASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214517_101150	Ga0214517_1011508	F086383	VTLHIALDGIYVNVNQHITQKLVEYLTSKSYTVKTIFPLEDEIIQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDHEVEARLISNEKKRLGL
Ga0214517_102360	Ga0214517_1023603	F097585	MEISIDENKPHKVSEVICVKCLHRWIAVRPIECRLKDLECAGCGEQGYVIETGEVIDG
Ga0214517_103774	Ga0214517_1037742	F057037	MIVLEVTDDKFGKIMKAVSEIGKHSECLAAIFEDLSEDSEYSERNNHKRYDDDDMYGSRYGMRRGGRRY
Ga0214517_104631	Ga0214517_1046313	F075545	MIQLVVNVNLLREIDERKLINAYARFMYNDEKDTTDDIQIRENLIQLLDWDKNGDNGLGTYCSHFESLKEKDWNVLINFIKENHHEIKSISFYPVKERKLESIKVINDILETKKQHNIERFTDENYEVSGRGKKARPCIYEGREYKSRQECMYKEGLTKYQLWIYLKETNQI
Ga0214517_106292	Ga0214517_1062921	F086383	MTLHIALDGIYVNVNQHITQKLVEYLTEKSYAVKTIFPIQDESIQSILAGYDLTFSEKAMIAALDRSITWNSQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFNDVIQQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214517_107646	Ga0214517_1076462	F056169	MTPKEAIQLARKYNLEKEIRMELAAGLTPEEALEEWDIR
Ga0214517_108135	Ga0214517_1081351	F086383	MTLHIALDGIYVNVNHIIVQKLVEYFTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYGGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSNNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214517_108227	Ga0214517_1082272	F093056	MEVNINNMIYKRYEYLSSKGKVWTKWFKWNSDLRPELQMDDRRIINRLKNEYKEV
Ga0214517_110762	Ga0214517_1107621	F046128	MKKYLVRFTTKSGDYDKEWCYANSEDEAAQNIQNEHWNIASIDDVEMISEL
Ga0214517_111600	Ga0214517_1116001	F039427	MSKKMFALVSGIVGALQTIGVAIVTYNSPENSTVINSAIVAAGAAIIEICNLFIKAE
Ga0214517_113208	Ga0214517_1132081	F079361	FEDIIMIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYILKDQLDEIQ

Scaffold ID

Protein ID

Family

Sequence

Ga0214517_100310

Ga0214517_10031023

F086383

MTLHIALDGIYVNVNHIIVQKLVEYFASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL

Ga0214517_101150

Ga0214517_1011508

F086383

VTLHIALDGIYVNVNQHITQKLVEYLTSKSYTVKTIFPLEDEIIQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDHEVEARLISNEKKRLGL

Ga0214517_102360

Ga0214517_1023603

F097585

MEISIDENKPHKVSEVICVKCLHRWIAVRPIECRLKDLECAGCGEQGYVIETGEVIDG

Ga0214517_103774

Ga0214517_1037742

F057037

MIVLEVTDDKFGKIMKAVSEIGKHSECLAAIFEDLSEDSEYSERNNHKRYDDDDMYGSRYGMRRGGRRY

Ga0214517_104631

Ga0214517_1046313

F075545

MIQLVVNVNLLREIDERKLINAYARFMYNDEKDTTDDIQIRENLIQLLDWDKNGDNGLGTYCSHFESLKEKDWNVLINFIKENHHEIKSISFYPVKERKLESIKVINDILETKKQHNIERFTDENYEVSGRGKKARPCIYEGREYKSRQECMYKEGLTKYQLWIYLKETNQI

Ga0214517_106292

Ga0214517_1062921

F086383

MTLHIALDGIYVNVNQHITQKLVEYLTEKSYAVKTIFPIQDESIQSILAGYDLTFSEKAMIAALDRSITWNSQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFNDVIQQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL

Ga0214517_107646

Ga0214517_1076462

F056169

MTPKEAIQLARKYNLEKEIRMELAAGLTPEEALEEWDIR

Ga0214517_108135

Ga0214517_1081351

F086383

MTLHIALDGIYVNVNHIIVQKLVEYFTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYGGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSNNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL

Ga0214517_108227

Ga0214517_1082272

F093056

MEVNINNMIYKRYEYLSSKGKVWTKWFKWNSDLRPELQMDDRRIINRLKNEYKEV

Ga0214517_110762

Ga0214517_1107621

F046128

MKKYLVRFTTKSGDYDKEWCYANSEDEAAQNIQNEHWNIASIDDVEMISEL

Ga0214517_111600

Ga0214517_1116001

F039427

MSKKMFALVSGIVGALQTIGVAIVTYNSPENSTVINSAIVAAGAAIIEICNLFIKAE

Ga0214517_113208

Ga0214517_1132081

F079361

FEDIIMIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYILKDQLDEIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021540: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences