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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021540 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118397 | Gp0242250 | Ga0214517 |
| Sample Name | Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 60007591 |
| Sequencing Scaffolds | 12 |
| Novel Protein Genes | 12 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae | 1 |
| Not Available | 7 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp. | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.4149 | Long. (o) | -119.841 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039427 | Metagenome / Metatranscriptome | 163 | Y |
| F046128 | Metagenome / Metatranscriptome | 151 | Y |
| F056169 | Metagenome / Metatranscriptome | 138 | Y |
| F057037 | Metagenome / Metatranscriptome | 136 | Y |
| F075545 | Metagenome / Metatranscriptome | 118 | Y |
| F079361 | Metagenome / Metatranscriptome | 116 | Y |
| F086383 | Metagenome / Metatranscriptome | 110 | N |
| F093056 | Metagenome / Metatranscriptome | 106 | Y |
| F097585 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214517_100310 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae | 21046 | Open in IMG/M |
| Ga0214517_101150 | Not Available | 5863 | Open in IMG/M |
| Ga0214517_102360 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp. | 2855 | Open in IMG/M |
| Ga0214517_103774 | Not Available | 1800 | Open in IMG/M |
| Ga0214517_104631 | Not Available | 1487 | Open in IMG/M |
| Ga0214517_106292 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315 | 1122 | Open in IMG/M |
| Ga0214517_107646 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 954 | Open in IMG/M |
| Ga0214517_108135 | Not Available | 906 | Open in IMG/M |
| Ga0214517_108227 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 898 | Open in IMG/M |
| Ga0214517_110762 | Not Available | 725 | Open in IMG/M |
| Ga0214517_111600 | Not Available | 685 | Open in IMG/M |
| Ga0214517_113208 | Not Available | 625 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214517_100310 | Ga0214517_10031023 | F086383 | MTLHIALDGIYVNVNHIIVQKLVEYFASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL |
| Ga0214517_101150 | Ga0214517_1011508 | F086383 | VTLHIALDGIYVNVNQHITQKLVEYLTSKSYTVKTIFPLEDEIIQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDHEVEARLISNEKKRLGL |
| Ga0214517_102360 | Ga0214517_1023603 | F097585 | MEISIDENKPHKVSEVICVKCLHRWIAVRPIECRLKDLECAGCGEQGYVIETGEVIDG |
| Ga0214517_103774 | Ga0214517_1037742 | F057037 | MIVLEVTDDKFGKIMKAVSEIGKHSECLAAIFEDLSEDSEYSERNNHKRYDDDDMYGSRYGMRRGGRRY |
| Ga0214517_104631 | Ga0214517_1046313 | F075545 | MIQLVVNVNLLREIDERKLINAYARFMYNDEKDTTDDIQIRENLIQLLDWDKNGDNGLGTYCSHFESLKEKDWNVLINFIKENHHEIKSISFYPVKERKLESIKVINDILETKKQHNIERFTDENYEVSGRGKKARPCIYEGREYKSRQECMYKEGLTKYQLWIYLKETNQI |
| Ga0214517_106292 | Ga0214517_1062921 | F086383 | MTLHIALDGIYVNVNQHITQKLVEYLTEKSYAVKTIFPIQDESIQSILAGYDLTFSEKAMIAALDRSITWNSQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFNDVIQQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL |
| Ga0214517_107646 | Ga0214517_1076462 | F056169 | MTPKEAIQLARKYNLEKEIRMELAAGLTPEEALEEWDIR |
| Ga0214517_108135 | Ga0214517_1081351 | F086383 | MTLHIALDGIYVNVNHIIVQKLVEYFTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYGGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSNNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL |
| Ga0214517_108227 | Ga0214517_1082272 | F093056 | MEVNINNMIYKRYEYLSSKGKVWTKWFKWNSDLRPELQMDDRRIINRLKNEYKEV |
| Ga0214517_110762 | Ga0214517_1107621 | F046128 | MKKYLVRFTTKSGDYDKEWCYANSEDEAAQNIQNEHWNIASIDDVEMISEL |
| Ga0214517_111600 | Ga0214517_1116001 | F039427 | MSKKMFALVSGIVGALQTIGVAIVTYNSPENSTVINSAIVAAGAAIIEICNLFIKAE |
| Ga0214517_113208 | Ga0214517_1132081 | F079361 | FEDIIMIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYILKDQLDEIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |