3300011257: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.2

Overview

Basic Information

• IMG/M Taxon OID: 3300011257
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121704 | Gp0173487 | Ga0151658
• Sample Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.2
• Sequencing Status: Permanent Draft
• Sequencing Center: Toyama Prefectural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 166072000
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
Not Available	16
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium BBFL7	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Dna From Seawater And Marine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.1316
  • Long. (^o): 137.71844
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001874	Metagenome	623	Y
F005129	Metagenome / Metatranscriptome	411	Y
F008424	Metagenome / Metatranscriptome	333	Y
F009962	Metagenome / Metatranscriptome	310	Y
F012505	Metagenome / Metatranscriptome	280	Y
F031532	Metagenome	182	N
F032660	Metagenome / Metatranscriptome	179	Y
F037230	Metagenome / Metatranscriptome	168	Y
F037503	Metagenome / Metatranscriptome	168	Y
F042317	Metagenome	158	Y
F044014	Metagenome	155	Y
F045764	Metagenome / Metatranscriptome	152	N
F059342	Metagenome / Metatranscriptome	134	N
F060609	Metagenome / Metatranscriptome	132	Y
F061521	Metagenome / Metatranscriptome	131	Y
F071990	Metagenome / Metatranscriptome	121	Y
F076109	Metagenome	118	Y
F078923	Metagenome / Metatranscriptome	116	Y
F085721	Metagenome / Metatranscriptome	111	N
F085725	Metagenome	111	Y
F096595	Metagenome	104	Y
F097129	Metagenome	104	N
F099865	Metagenome	103	N
F105207	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151658_1002595	All Organisms → cellular organisms → Bacteria	1885
Ga0151658_1036374	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	607
Ga0151658_1039404	Not Available	697
Ga0151658_1042757	Not Available	770
Ga0151658_1045416	Not Available	919
Ga0151658_1055091	Not Available	703
Ga0151658_1062125	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	967
Ga0151658_1075939	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	647
Ga0151658_1086392	Not Available	772
Ga0151658_1101621	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium BBFL7	673
Ga0151658_1105643	Not Available	703
Ga0151658_1107031	Not Available	612
Ga0151658_1110958	Not Available	642
Ga0151658_1116090	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1246
Ga0151658_1132913	Not Available	932
Ga0151658_1136645	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	719
Ga0151658_1140995	Not Available	605
Ga0151658_1142900	Not Available	584
Ga0151658_1142942	Not Available	562
Ga0151658_1165805	Not Available	524
Ga0151658_1183116	Not Available	566
Ga0151658_1194882	Not Available	670
Ga0151658_1204225	Not Available	540
Ga0151658_1211029	All Organisms → cellular organisms → Bacteria	705

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151658_1002595	Ga0151658_10025951	F037503	MHLGAASRLSFIEVELLIGLGGFTAYQPLTNSECYKIYSGVRAWVLRSMSERERTQIIS*
Ga0151658_1036374	Ga0151658_10363742	F097129	TTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDRMLKEKGEKPNVTSLAVFGVIALGLSLITFPTIIQKLQERRILKNV*
Ga0151658_1039404	Ga0151658_10394042	F012505	MSKFMIYNADEVTFILSKTLDEARQWAIMYCDHSHEIIVREISDIKYKY*
Ga0151658_1042757	Ga0151658_10427571	F060609	MKREKMKGASEQIADMERRDFCRKAIRRSSVAAAVGVAGYLAYRKPSVKSFFGASDAYAASTGPGKFSLKGDSN*
Ga0151658_1045416	Ga0151658_10454162	F009962	MSTLQFMGRGELVPRLIEQPGGNKEFAYELLKKRGDMDAEGKLTAKGEKRNQMTAEERAFDRAGESPHTHTYNPETNRLEKN*
Ga0151658_1055091	Ga0151658_10550912	F008424	METQVNILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKRDDLERIIYGKER*
Ga0151658_1062125	Ga0151658_10621251	F009962	MGRGELVPRLIAQVGNEAFAKNLLKKRGRVNADGTLTAKGEKRNQMTAEERAFDRAGESVHTHDYNPETNRLEKI*
Ga0151658_1074834	Ga0151658_10748342	F071990	FGTVDISGGAANSSVLTLLWDITADGGNTLAETFKLWLSDNGFDQAGSVLKVQPLSGGDQGAPSLTENYKANAGTGDYTFTNMVEAEPGAINIWPTDEGTSMAVSTASDDVVMCAMYCAIAANETTGTYKGTDAGMELQFSFKYSYS*
Ga0151658_1075939	Ga0151658_10759392	F061521	MNPEFIKIEIERIVNLVTGFGWKKVEEKIEPGRVLITLEKSVKVTDE*
Ga0151658_1086392	Ga0151658_10863923	F085721	MTDTEIKDRTAGKCFAKINALENSLEYLAIQKPYLAYTQEMIDAQISFKRRELTIWNHMALLNETTT*
Ga0151658_1101621	Ga0151658_11016212	F096595	MTSLVKFGQYVHHQRLRKGLTQLELSLKVFNKPNLEYRGRLERGKLTGITFTTADKIMMVFDSELEFKEYKF*
Ga0151658_1105643	Ga0151658_11056433	F005129	MNYKVKIAEVNKSFSLAHHSYIDLGVFTVNASTYSFLYPAVKTDWGCDMNDTELEFLVNNKKCKYVGFKELYTQLYGNSFATFEADLIRQIEEEVAKNIIKEYPGTDVNF*
Ga0151658_1107031	Ga0151658_11070311	F032660	MEELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKRGWCVSDKGLTAFYKQMLYTFAYE
Ga0151658_1110958	Ga0151658_11109581	F037230	MKNLTEEYVNIDWSGICEDFDLDSGDISPEQSFEIDRALGNINEVIHNFIDQNKTKVHIGTATLTSTEHNVLMVALDHMYEHLDNLVGDLETFEEENTNLKRIDEVQSLKEMFNL*
Ga0151658_1116090	Ga0151658_11160903	F076109	MEVLFKILFVIAFIAFIFCLWVFMGGLFVAFQKNELPDIEDV*
Ga0151658_1132913	Ga0151658_11329131	F085725	MNLLLVSFLLLISAVAIGFYLVYLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIFTGPIDKLNNVAGLLLFLAILGGGMVFALNEENKPPSMSAVTAHAIMGLVGILLLIINLF*
Ga0151658_1136645	Ga0151658_11366452	F042317	MELILSILGAAGLGHLAADLFSRFEWMPDKPMKCNMCMTFWLNVGPFIFLYGYRGILYAALASIISELYLKIIL*
Ga0151658_1140995	Ga0151658_11409951	F078923	RHAIEEAEKDILAAEAKGKRSIYAPGYFTMVGNEIIHKVNRMTLKKHQD*
Ga0151658_1140995	Ga0151658_11409952	F059342	MSTTKYNGYTDLNTWRVFHDTLSDIDFKSKVTADELEEISLSVVLSNFQWICGSHLVEEHARLFIEPADFQDIADSINNDIR*
Ga0151658_1142900	Ga0151658_11429001	F099865	DDKITLADCNEQIRTWAKTLAEREIEKRPEGKQLSKLKGIKRVALDTIMESEAPATLTESLNKVMTKFIGVSWHEEPKAIEHN*
Ga0151658_1142942	Ga0151658_11429421	F044014	MNTEYKPRFSFEISWEQKARADRLISTYGLRKAMFGNILDDVLDMIEEFGGMAIGIIMSDGVKPRDVIPSMKQADEIGKK*
Ga0151658_1165805	Ga0151658_11658051	F031532	SMSHRITKKKVKTFLNLRFRKEPLMMYDDTLDVAVEVIQDFLNCDPLDVGRLQGNTYDTIYNIEKEIDNEN*
Ga0151658_1183116	Ga0151658_11831162	F045764	MKLTDEEIKEIADRMDDLMWEGFHDIVYDVYLQREDCFLDEEISDSDVIKVRKELKKYI*
Ga0151658_1194882	Ga0151658_11948822	F001874	MGYYVISNLIKERINMSNEIIVKLEEGLYEEYLEDLQKKYYGGINKVLGEPWFHKSDAEMEAEAEKKVKEFMDRNS*
Ga0151658_1204225	Ga0151658_12042251	F105207	INSIRASMLLGKGHKFLENGRYQEALEKALKAKSLKLEEQFEWLCHSIEGKSRYHLGDKENALPSLRRAQEILASKLEREKESKPLQNIMNDITWYIEKIEHVDT*
Ga0151658_1211029	Ga0151658_12110291	F076109	MGVLFNILFVIAVIATIFCLCVFLGGLFILFEKDELPDIEDF*