NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029227

3300029227: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002670-43



Overview

Basic Information
IMG/M Taxon OID3300029227 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127425 | Gp0192952 | Ga0168687
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002670-43
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size152057865
Sequencing Scaffolds26
Novel Protein Genes30
Associated Families30

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → unclassified Peptostreptococcaceae → Peptostreptococcaceae bacterium pGA-81
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F029444Metagenome188Y
F032286Metagenome / Metatranscriptome180Y
F039147Metagenome164N
F042910Metagenome157N
F045105Metagenome153N
F047126Metagenome150N
F047755Metagenome149Y
F050793Metagenome145N
F051935Metagenome143N
F051936Metagenome143N
F056623Metagenome137N
F059982Metagenome133N
F062320Metagenome / Metatranscriptome130Y
F067720Metagenome125Y
F070133Metagenome123N
F072366Metagenome121N
F073574Metagenome120N
F075480Metagenome119N
F076064Metagenome118N
F077320Metagenome117N
F078693Metagenome116N
F078822Metagenome116N
F081354Metagenome114Y
F082714Metagenome113N
F088914Metagenome109N
F091068Metagenome108N
F101193Metagenome102N
F101355Metagenome102N
F102166Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168687_100100All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii137722Open in IMG/M
Ga0168687_100138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae105928Open in IMG/M
Ga0168687_100213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales77985Open in IMG/M
Ga0168687_100245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales71936Open in IMG/M
Ga0168687_100249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes70787Open in IMG/M
Ga0168687_100269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae67009Open in IMG/M
Ga0168687_100283All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales65540Open in IMG/M
Ga0168687_100379All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales54707Open in IMG/M
Ga0168687_100428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis49407Open in IMG/M
Ga0168687_100550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae41288Open in IMG/M
Ga0168687_100678All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales34978Open in IMG/M
Ga0168687_100748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales32200Open in IMG/M
Ga0168687_100772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales31534Open in IMG/M
Ga0168687_101069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales22962Open in IMG/M
Ga0168687_101288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae18687Open in IMG/M
Ga0168687_101330All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales18218Open in IMG/M
Ga0168687_101337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18171Open in IMG/M
Ga0168687_102440All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales9064Open in IMG/M
Ga0168687_102583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes8555Open in IMG/M
Ga0168687_103092All Organisms → cellular organisms → Bacteria6888Open in IMG/M
Ga0168687_104033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5097Open in IMG/M
Ga0168687_110756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → unclassified Peptostreptococcaceae → Peptostreptococcaceae bacterium pGA-81780Open in IMG/M
Ga0168687_113163All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1449Open in IMG/M
Ga0168687_121543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes895Open in IMG/M
Ga0168687_125080All Organisms → cellular organisms → Bacteria768Open in IMG/M
Ga0168687_137606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales537Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168687_100100Ga0168687_10010033F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY
Ga0168687_100138Ga0168687_10013831F047126LYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKTSKNVLTNACQSAIITKR
Ga0168687_100213Ga0168687_10021364F032286MVKWVCQIVTPIRHRVLIFDVRLSAGNTTNDTLVTGNTRSFCRLMCLCVKRRNVKPDSKRRSLPDSALFHADNRTEQKTISLFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIARSRISKRSENAPKNADFHAYGQDRERAET
Ga0168687_100245Ga0168687_10024515F059982MRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDDDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGASVYVAEDAAAAASPEV
Ga0168687_100245Ga0168687_10024557F075480VAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDHLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSLGIQVDLTEADTSHLKSCEVQMECRVGVFGKDGKATQWQKEILAATITFK
Ga0168687_100249Ga0168687_10024945F039147MRARRLLIPLMMLLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDYNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIAGESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLTKSAMNAASLAARMSASADAPDILRLGLTPDMPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLTMVSDYEKTLTELRRQQENAPAWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGEISLEEFVEEADKLIEGLEQ
Ga0168687_100249Ga0168687_10024957F070133MKRLLGLLLAMMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIGQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0168687_100249Ga0168687_10024961F051935MKRLLGLLLAMMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGAISYYVEGYGTTYINMSYDRGLEFQIDVPVYSRFSYEVYPVEEHSFGVEDFDLATCPLSMQEFLVPAVVTCGEEGAGLYIMVQQDVQPIVMLADGEAIEAIPQRWQRDWVIVCYRGNYLFMKTENCKIEE
Ga0168687_100269Ga0168687_10026913F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVLDRLFAVPYTPKENRKNPGKFIVFSAWYAAKALEMDVK
Ga0168687_100283Ga0168687_10028349F072366MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWTKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEKRLQIRLEVGEWNLQKNDMDQAVQSDFDDAMTWYRDNGRKLLEAKNKTNN
Ga0168687_100379Ga0168687_10037911F042910LADRLYCALNGTTLHDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGTLTLHEDGKRVLRVVCTQFPAMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
Ga0168687_100428Ga0168687_10042827F101355MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0168687_100550Ga0168687_10055065F067720MASTTYEHFVDVNKMYAAQEQFRHVTKMVCTRFRGLTKTYHLGAIAAMVRNAGQLPQPFWLGAARGSGSCSAARCAART
Ga0168687_100678Ga0168687_10067821F082714MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIKTLRKAVEIRSVEAVECETLARWAF
Ga0168687_100748Ga0168687_10074823F101193MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAATVLVPTELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0168687_100772Ga0168687_1007727F073574MLLPAAVRPYAADVDGTDSRVRCAIALNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQVDLSFEYPDAEEVSAFANPGDAFTWIWISMRCTRCHAVFRGNFAAD
Ga0168687_101069Ga0168687_1010695F050793MADIHAIQTRVKKHNLLTAALLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQNEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0168687_101288Ga0168687_10128817F078822RTAQSLYQRSYFLSSTFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168687_101330Ga0168687_10133037F062320MKEFFETMMKDIYSEHCTRREYVIYGIIAPLVLFAAVLLAGLIESI
Ga0168687_101337Ga0168687_1013377F056623MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAVALQSMTLVRAEIPATQKRDWKPLILPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0168687_102409Ga0168687_1024094F045105MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEKRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPAGSSLGQWDIRAQVALSQTLEKIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFANLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPLQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGSSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGALLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASDAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSLTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYRKDGELIWHFWLSTDMGYFLLDVRDSDLSVVDSVQIPSFCALRASILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLRQTIYPDVPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRVMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0168687_102440Ga0168687_1024404F091068MNEKSQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0168687_102583Ga0168687_1025839F077320MKRKGMRRRRKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWEGLSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTATPLPEWLADW
Ga0168687_103092Ga0168687_1030924F081354XXXXAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR
Ga0168687_104033Ga0168687_1040335F102166MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMGEMVDYITEIANGESADNVFAMWQADIGAV
Ga0168687_110756Ga0168687_1107561F047755MINDMDKKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFNKYPLITFAMAKLMEMNATEQNKIAMYLFNCITWI
Ga0168687_113163Ga0168687_1131633F051936LALRGKAFGFSVLQEHAVMTPVISIFILMVIIRYLSIHISIKK
Ga0168687_121543Ga0168687_1215432F026592ASPQGIDAQASQGSVAPLTERSDETFSVGQFSSADWE
Ga0168687_125080Ga0168687_1250802F078693LRAKREPELVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC
Ga0168687_137606Ga0168687_1376061F029444MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLQKSGIIAEKESQILGCRFVGFDGPKKVAPFFNF

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