3300023038: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D2

Overview

Basic Information

• IMG/M Taxon OID: 3300023038
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272173 | Ga0233370
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82435090
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F042737	Metagenome / Metatranscriptome	157	Y
F062320	Metagenome / Metatranscriptome	130	Y
F066313	Metagenome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233370_1008505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1022
Ga0233370_1009650	Not Available	972
Ga0233370_1020088	Not Available	709
Ga0233370_1036049	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233370_1008505	Ga0233370_10085052	F041521	GTFDAGEFRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233370_1009650	Ga0233370_10096502	F062320	MKEFLEIMGKDIMSENFTRKKYVVYGIIAPLVLVLVCGLVGSLA
Ga0233370_1020088	Ga0233370_10200882	F042737	MKLTEKSMEVYNYVKENGGRVSIEELAAGLNRTPRSVNANVTDLCSEKKGLAMREKVKGEGEDAKDITYVVLT
Ga0233370_1036049	Ga0233370_10360491	F066313	MKEKIKEWMGKDNITFSAICGEKFTNSEVVYTHIGLVVFLLALGIVGGVE