3300009388: Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA - Hexadecane

Overview

Basic Information

• IMG/M Taxon OID: 3300009388
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117979 | Gp0126398 | Ga0103809
• Sample Name: Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA - Hexadecane
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, San Diego
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135262569
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Sequencing Of An Anaerobic Hexadecane-degrading Microbial Consortia From University Of California, San Diego, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Metatranscriptome Sequencing Of An Anaerobic Hexadecane-degrading Microbial Consortia From University Of California, San Diego, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: UCSD, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029455	Metagenome / Metatranscriptome	188	Y
F030143	Metagenome / Metatranscriptome	186	Y
F036301	Metagenome / Metatranscriptome	170	Y
F043480	Metagenome / Metatranscriptome	156	Y
F047387	Metagenome / Metatranscriptome	150	Y
F053932	Metagenome / Metatranscriptome	140	Y
F056321	Metagenome / Metatranscriptome	137	N
F056343	Metagenome / Metatranscriptome	137	N
F058725	Metagenome / Metatranscriptome	134	N
F061534	Metagenome / Metatranscriptome	131	N
F063408	Metagenome / Metatranscriptome	129	Y
F072488	Metagenome / Metatranscriptome	121	Y
F073228	Metagenome / Metatranscriptome	120	N
F081499	Metagenome / Metatranscriptome	114	Y
F084900	Metagenome / Metatranscriptome	112	Y
F088316	Metagenome / Metatranscriptome	109	N
F091989	Metagenome / Metatranscriptome	107	Y
F098715	Metagenome / Metatranscriptome	103	N
F102634	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103809_1000012	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	130458
Ga0103809_1000137	Not Available	43467
Ga0103809_1000411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	21530
Ga0103809_1000880	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	10940
Ga0103809_1001406	Not Available	6967
Ga0103809_1003009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	3698
Ga0103809_1004006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	3019
Ga0103809_1004612	All Organisms → cellular organisms → Bacteria → Proteobacteria	2745
Ga0103809_1006809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	2133
Ga0103809_1007965	All Organisms → cellular organisms → Bacteria	1917
Ga0103809_1015077	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1244
Ga0103809_1019536	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1037
Ga0103809_1021707	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	961
Ga0103809_1024899	All Organisms → cellular organisms → Bacteria	869
Ga0103809_1026201	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	836
Ga0103809_1027432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	807
Ga0103809_1027450	All Organisms → cellular organisms → Bacteria	806
Ga0103809_1031027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	736
Ga0103809_1034754	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	674
Ga0103809_1050388	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103809_1000012	Ga0103809_100001298	F043480	MHKILFLAGLCIALTSAALLFFGIIEPGLAAMIGIVGIGLIAASGMSHIKRL*
Ga0103809_1000137	Ga0103809_10001377	F047387	MAAEVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI*
Ga0103809_1000411	Ga0103809_100041120	F102634	METIIKKRIEIKGYGMLDGEFIQNEHGWFCREVNGLRWNFREWGAPAAMETPEEAAFYLLSLDVDDAE*
Ga0103809_1000880	Ga0103809_10008806	F091989	MRLSAFARSVIQAANVNGYATDASRASDPLIRPFGEHDEQKASLRALQESTIGLCWVNSEGKLVPFNEAEFAGIQKEIANLQAKIDHNAVILDKLDAKVAELGLTEFSISKLKGQIEKLRSNINQIRAEENDSLRSKWEAVVSLGGNRATYDKLPEVIEARTKAAEKIAPIESEIKAFNAQIRSLESILSKFKR*
Ga0103809_1001406	Ga0103809_10014064	F073228	VEGIDMAITIGDIMDINSSKYGEFLYKIVMVFPHNMEVDKTELARLIKISNNTLTFERKTGEKFTLDERDIEHMDLFKSPNYRGGE*
Ga0103809_1003009	Ga0103809_10030093	F058725	MGERLKAPFFACVGGGGVLTFVGTADDQAVYWFLEAIDPRPGEGPWPPVGRLQRPRYRVSPIRFGTGFYYGIRIPYGGTVRWHSVNEVNSGLTLTDASKHATNIYLAPKRPPLIRYGMHYKFGQVKYGEGSGLYDRVTVKAVLD*
Ga0103809_1004006	Ga0103809_10040064	F088316	MTLYRVREGYVVHLGNRQTLSPGTIFEPDRKVLESQGWKVEPVKEVEPVPEEAKPVTKDVEAPPQDRMIKKPPVKK*
Ga0103809_1004612	Ga0103809_10046123	F056321	MPHMEAPATPPVIYVHVEFYRGVKAIAKFLGVHERTAQAFLHDGKIPGKKDGTGTWVLTNLDYFTSLQR*
Ga0103809_1006809	Ga0103809_10068092	F030143	VSQGHDLDRLLDGYPAMVVKGFLAAAQVHRRRLLTEQVVALTVAVTGALDLALNQGKGKVLERWLEEVLGEDQGEPPLRRPKMSDRAFSFFTAMPRRNTKGKLRT*
Ga0103809_1006809	Ga0103809_10068093	F056343	MPDEITDHQVLSSYLAEEQVDGFTVKPWTIKQLILVMPILDALVQEFKTQGVTLDNLGEVFEGQGLAAAKDIIQTILPRLPEFLAITLRIDREQAEELDLGLGMQLAVKVLRMNVDHLKNAFGLIMSQVGVLIGPEATS*
Ga0103809_1007965	Ga0103809_10079652	F061534	MNDCGHIPPELMERVRGMFLTLFGGKEKLDCWLTRIADELADADNPANRPIKLDPSLIPEEFQSVMHRPKEVVDLIVERLDSLSVFGYTAKIIKQGEVSLAIVSDQVSGHVIEEAAGPDPDNLIHSLVEKYGPNLEVVKE*
Ga0103809_1015077	Ga0103809_10150772	F029455	MPDRTIDLNLWDEGAAENLPAITVTGQGLRIEGSIAEFDRLILILGEWLKS*
Ga0103809_1019536	Ga0103809_10195363	F063408	MPDSGPEEIVLEITDDGAAATWWWTEEADQILSALGPPASGFEGVNSNPWCG*
Ga0103809_1021707	Ga0103809_10217072	F084900	MDISVHERACQAFIEALRRSEDMVFVKDEIIISEKKKIGDSVICAMEAHKGNGDSSHASGQAYVYRDLVIVCVESVRKRFTEPVYPHHYEYLSY*
Ga0103809_1024899	Ga0103809_10248992	F072488	MKSPALDPQLAWALWYELAKWSFLLWECYQEDFLRLAEEEKAKRGKDPEEEFEIEIPF*
Ga0103809_1026201	Ga0103809_10262012	F036301	MFTSKKVLIHDRRPDTPEFLLEVVVNRGYKAGFAKDGTEIIAMLSNDQYDVVLTNGGYSKLNHDQHMQLKSSSVFIIDIKESHNQNQDMDLQADLDLPRPLLISELWRAINSAPIT*
Ga0103809_1027432	Ga0103809_10274322	F098715	MADSIKVQAMQKLAGVFGAMAAIGSVHRWQGSPTDLDRVKLPALFFWDEDETRDKRNRLAMGTLKLYVAIFCRLSPAGAASFPDVADNLQGAIHNALLGTSELQGLVENLQEERVWKEFPNDQYGVLFMSFTLTYAHAWGDAFSTTY*
Ga0103809_1027450	Ga0103809_10274502	F058725	MGDRLKVPFLAGIQGGGVMTFIGTREGQAVYWFLEAIDPRPGLGPWPPVGRLQRPRYRVSPIRFGTGFQYGIRIPYGGTVRWHPASEVNSGLTLTDASKHAVNIYLAPKRPPLIRYGMHYKFGEVRYSEESGLYDRVTVKAVLG*
Ga0103809_1031027	Ga0103809_10310272	F053932	MNRWLPHVLHPRPGWFILHAAAIVLVFLLGYSVRF*
Ga0103809_1034754	Ga0103809_10347541	F030143	LASQGHDLYQLIDGYPALMVKGLVAASQVRSRHRLMEQGVALTVAVTGGLDLAFNQGKGKVLERWLKEMSGEEKSEPHEERPKMSDRAFSFFASMPRQRPDRPAREK*
Ga0103809_1050388	Ga0103809_10503881	F081499	VKVFSLENPYVVEQAQVIKNTEGSNEAIVKGEMADTLPGS*