NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F027186

Metagenome / Metatranscriptome Family F027186

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F027186
Family Type Metagenome / Metatranscriptome
Number of Sequences 195
Average Sequence Length 41 residues
Representative Sequence MVTNSDFNFTNNETVTLELPFSEHIEELRQRLFHIFWI
Number of Associated Samples 170
Number of Associated Scaffolds 195

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.56 %
% of genes near scaffold ends (potentially truncated) 94.36 %
% of genes from short scaffolds (< 2000 bps) 82.05 %
Associated GOLD sequencing projects 165
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (86.154 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(18.462 % of family members)
Environment Ontology (ENVO) Unclassified
(29.744 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(70.256 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.24%    β-sheet: 0.00%    Coil/Unstructured: 75.76%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 195 Family Scaffolds
PF02823ATP-synt_DE_N 65.13
PF02874ATP-synt_ab_N 7.18
PF00006ATP-synt_ab 5.64
PF00902TatC 3.59
PF00401ATP-synt_DE 2.56
PF00306ATP-synt_ab_C 2.05
PF01084Ribosomal_S18 1.54
PF00471Ribosomal_L33 1.03
PF16639Apocytochr_F_N 1.03
PF01649Ribosomal_S20p 0.51
PF13181TPR_8 0.51
PF07394DUF1501 0.51

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 195 Family Scaffolds
COG0355FoF1-type ATP synthase, epsilon subunitEnergy production and conversion [C] 67.69
COG0805Twin-arginine protein secretion pathway component TatCIntracellular trafficking, secretion, and vesicular transport [U] 3.59
COG0055FoF1-type ATP synthase, beta subunitEnergy production and conversion [C] 2.05
COG0056FoF1-type ATP synthase, alpha subunitEnergy production and conversion [C] 2.05
COG1155Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1Energy production and conversion [C] 2.05
COG1156Archaeal/vacuolar-type H+-ATPase subunit B/Vma2Energy production and conversion [C] 2.05
COG0238Ribosomal protein S18Translation, ribosomal structure and biogenesis [J] 1.54
COG0267Ribosomal protein L33Translation, ribosomal structure and biogenesis [J] 1.03
COG0268Ribosomal protein S20Translation, ribosomal structure and biogenesis [J] 0.51


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.15 %
All OrganismsrootAll Organisms13.85 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2046860007|LWAeNNiSIP_GDP3C2T02GALZ5Not Available507Open in IMG/M
3300000137|LP_F_10_SI03_10DRAFT_c1042350Not Available631Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1033700Not Available507Open in IMG/M
3300000243|SA_S2_NOR18_50mDRAFT_1049888Not Available635Open in IMG/M
3300003566|Ga0008455J51687_1004106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales2173Open in IMG/M
3300005527|Ga0068876_10730928Not Available527Open in IMG/M
3300005825|Ga0074476_1025649All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua692Open in IMG/M
3300005825|Ga0074476_1059108All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana26643Open in IMG/M
3300005825|Ga0074476_1599564Not Available551Open in IMG/M
3300005941|Ga0070743_10023570Not Available2138Open in IMG/M
3300005954|Ga0073925_1007456All Organisms → cellular organisms → Bacteria1106Open in IMG/M
3300005987|Ga0075158_10279634Not Available949Open in IMG/M
3300006373|Ga0075483_1287898Not Available1149Open in IMG/M
3300006424|Ga0075497_1046437Not Available2164Open in IMG/M
3300006571|Ga0075505_1009430Not Available1717Open in IMG/M
3300006803|Ga0075467_10478800Not Available642Open in IMG/M
3300006803|Ga0075467_10691332Not Available519Open in IMG/M
3300006870|Ga0075479_10231356Not Available736Open in IMG/M
3300006874|Ga0075475_10060304Not Available1770Open in IMG/M
3300006917|Ga0075472_10465912Not Available627Open in IMG/M
3300007228|Ga0075175_1057320Not Available587Open in IMG/M
3300007228|Ga0075175_1098152All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana3496Open in IMG/M
3300007230|Ga0075179_1081313Not Available606Open in IMG/M
3300007230|Ga0075179_1095460Not Available687Open in IMG/M
3300007235|Ga0075184_10125793All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana3504Open in IMG/M
3300007239|Ga0075171_1045382All Organisms → cellular organisms → Eukaryota1024Open in IMG/M
3300007248|Ga0075168_1067830Not Available511Open in IMG/M
3300007543|Ga0102853_1121084Not Available505Open in IMG/M
3300007558|Ga0102822_1181400Not Available501Open in IMG/M
3300007621|Ga0102872_1151040Not Available616Open in IMG/M
3300007623|Ga0102948_1202426Not Available603Open in IMG/M
3300007651|Ga0102900_1016517Not Available1528Open in IMG/M
3300007665|Ga0102908_1038704Not Available919Open in IMG/M
3300007665|Ga0102908_1130045Not Available519Open in IMG/M
3300007725|Ga0102951_1244606Not Available511Open in IMG/M
3300008724|Ga0103785_105520Not Available577Open in IMG/M
3300008931|Ga0103734_1001693Not Available2260Open in IMG/M
3300008936|Ga0103739_1015455Not Available956Open in IMG/M
3300008938|Ga0103741_1003069All Organisms → cellular organisms → Eukaryota2148Open in IMG/M
3300008938|Ga0103741_1005333Not Available1821Open in IMG/M
3300008958|Ga0104259_1016576Not Available715Open in IMG/M
3300009001|Ga0102963_1253717Not Available696Open in IMG/M
3300009003|Ga0102813_1228784Not Available574Open in IMG/M
3300009055|Ga0102905_1125604All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua540Open in IMG/M
3300009058|Ga0102854_1107738Not Available798Open in IMG/M
3300009071|Ga0115566_10513359Not Available678Open in IMG/M
3300009079|Ga0102814_10512175Not Available654Open in IMG/M
3300009086|Ga0102812_10802690Not Available522Open in IMG/M
3300009141|Ga0102884_1094352Not Available752Open in IMG/M
3300009221|Ga0103849_1055363Not Available563Open in IMG/M
3300009221|Ga0103849_1061880Not Available538Open in IMG/M
3300009252|Ga0103863_10037282Not Available647Open in IMG/M
3300009254|Ga0103867_1043284Not Available503Open in IMG/M
3300009257|Ga0103869_10063472Not Available860Open in IMG/M
3300009327|Ga0103843_101198Not Available1258Open in IMG/M
3300009423|Ga0115548_1014390All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana3331Open in IMG/M
3300009432|Ga0115005_11005002Not Available675Open in IMG/M
3300009543|Ga0115099_10432949Not Available1611Open in IMG/M
3300009592|Ga0115101_1259911Not Available952Open in IMG/M
3300009592|Ga0115101_1851296Not Available677Open in IMG/M
3300009606|Ga0115102_10234100All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana5265Open in IMG/M
3300009608|Ga0115100_10161542Not Available2012Open in IMG/M
3300009728|Ga0123371_165551Not Available2145Open in IMG/M
3300009739|Ga0123362_1058740Not Available566Open in IMG/M
3300009757|Ga0123367_1206288Not Available999Open in IMG/M
3300012408|Ga0138265_1074453Not Available631Open in IMG/M
3300012408|Ga0138265_1224848Not Available540Open in IMG/M
3300012412|Ga0138266_1122050Not Available1368Open in IMG/M
3300012413|Ga0138258_1150198Not Available672Open in IMG/M
3300012415|Ga0138263_1025752Not Available2078Open in IMG/M
3300012415|Ga0138263_1467917Not Available2123Open in IMG/M
3300012417|Ga0138262_1345064Not Available795Open in IMG/M
3300012417|Ga0138262_1393068All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana4782Open in IMG/M
3300012418|Ga0138261_1347553Not Available1136Open in IMG/M
3300012419|Ga0138260_10464242Not Available509Open in IMG/M
3300012472|Ga0129328_1077143Not Available1046Open in IMG/M
3300012518|Ga0129349_1353108Not Available540Open in IMG/M
3300012523|Ga0129350_1474820All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana4026Open in IMG/M
3300012525|Ga0129353_1686718Not Available1121Open in IMG/M
3300012528|Ga0129352_10644230Not Available852Open in IMG/M
3300012953|Ga0163179_11655114Not Available580Open in IMG/M
3300012965|Ga0129346_1237645Not Available701Open in IMG/M
3300012968|Ga0129337_1298317Not Available1360Open in IMG/M
3300012968|Ga0129337_1325550Not Available1174Open in IMG/M
3300012968|Ga0129337_1382560Not Available2071Open in IMG/M
3300013295|Ga0170791_10912358Not Available538Open in IMG/M
(restricted) 3300014720|Ga0172376_10675978Not Available560Open in IMG/M
3300016731|Ga0182094_1246809Not Available1680Open in IMG/M
3300016731|Ga0182094_1266484Not Available2110Open in IMG/M
3300016740|Ga0182096_1010469Not Available1326Open in IMG/M
3300017744|Ga0181397_1174903Not Available542Open in IMG/M
3300017753|Ga0181407_1002143All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana6204Open in IMG/M
3300017753|Ga0181407_1115364Not Available671Open in IMG/M
3300018515|Ga0192960_104258Not Available682Open in IMG/M
3300018649|Ga0192969_1049387Not Available586Open in IMG/M
3300018692|Ga0192944_1001080All Organisms → cellular organisms → Eukaryota2047Open in IMG/M
3300018711|Ga0193069_1003239Not Available1256Open in IMG/M
3300018794|Ga0193357_1060685Not Available626Open in IMG/M
3300018813|Ga0192872_1020976Not Available1161Open in IMG/M
3300018964|Ga0193087_10160822Not Available727Open in IMG/M
3300018980|Ga0192961_10000157All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana6290Open in IMG/M
3300019010|Ga0193044_10007387Not Available2677Open in IMG/M
3300019022|Ga0192951_10029915Not Available1358Open in IMG/M
3300019111|Ga0193541_1000571Not Available2090Open in IMG/M
3300019133|Ga0193089_1000093All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana5737Open in IMG/M
3300019153|Ga0192975_10310499Not Available519Open in IMG/M
3300019191|Ga0180035_1074721Not Available659Open in IMG/M
3300019200|Ga0180036_1042410Not Available588Open in IMG/M
3300019201|Ga0180032_1019091Not Available796Open in IMG/M
3300019201|Ga0180032_1062444Not Available759Open in IMG/M
3300019214|Ga0180037_1195968Not Available716Open in IMG/M
3300019253|Ga0182064_1465276Not Available835Open in IMG/M
3300019715|Ga0193966_1011868Not Available873Open in IMG/M
3300019717|Ga0193972_1052003Not Available524Open in IMG/M
3300019726|Ga0193974_1004370Not Available1301Open in IMG/M
3300019739|Ga0194012_1015686Not Available830Open in IMG/M
3300019741|Ga0194020_1019955Not Available788Open in IMG/M
3300019747|Ga0193978_1005810Not Available1239Open in IMG/M
3300019756|Ga0194023_1086671Not Available630Open in IMG/M
3300019764|Ga0193963_1148281Not Available608Open in IMG/M
3300020084|Ga0194110_10815265Not Available564Open in IMG/M
3300021093|Ga0194123_10327928Not Available722Open in IMG/M
3300021282|Ga0210303_1113067Not Available685Open in IMG/M
3300021296|Ga0210300_100035Not Available653Open in IMG/M
3300021298|Ga0210349_1030496Not Available730Open in IMG/M
3300021298|Ga0210349_1135111All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua535Open in IMG/M
3300021299|Ga0210302_1007508Not Available2146Open in IMG/M
3300021305|Ga0210296_1001985Not Available2155Open in IMG/M
3300021316|Ga0210351_1283353Not Available2103Open in IMG/M
3300021323|Ga0210295_1040955Not Available720Open in IMG/M
3300021335|Ga0213867_1057799Not Available1465Open in IMG/M
3300021350|Ga0206692_1468583All Organisms → cellular organisms → Eukaryota2125Open in IMG/M
3300021353|Ga0206693_1823359Not Available2095Open in IMG/M
3300021356|Ga0213858_10437704Not Available610Open in IMG/M
3300021356|Ga0213858_10527115Not Available543Open in IMG/M
3300021359|Ga0206689_10538649Not Available1373Open in IMG/M
3300021364|Ga0213859_10305458Not Available718Open in IMG/M
3300021365|Ga0206123_10345658Not Available623Open in IMG/M
3300021368|Ga0213860_10129802Not Available1107Open in IMG/M
3300021389|Ga0213868_10389584Not Available773Open in IMG/M
3300021425|Ga0213866_10512740Not Available570Open in IMG/M
3300021501|Ga0193948_1020330Not Available897Open in IMG/M
3300021845|Ga0210297_1102778Not Available712Open in IMG/M
3300021947|Ga0213856_1145198Not Available771Open in IMG/M
3300022206|Ga0224499_10007328All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana3124Open in IMG/M
3300022369|Ga0210310_1010079Not Available918Open in IMG/M
3300022372|Ga0210293_130490Not Available524Open in IMG/M
3300022549|Ga0212091_10076071Not Available1260Open in IMG/M
3300024343|Ga0244777_10524160Not Available725Open in IMG/M
3300024346|Ga0244775_10324012Not Available1275Open in IMG/M
3300024346|Ga0244775_11495653Not Available516Open in IMG/M
3300024537|Ga0255225_1072936Not Available585Open in IMG/M
3300025577|Ga0209304_1026438Not Available1766Open in IMG/M
3300025872|Ga0208783_10148978Not Available994Open in IMG/M
3300026185|Ga0209949_1006866All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana4488Open in IMG/M
3300027194|Ga0208799_1017564Not Available1023Open in IMG/M
3300027203|Ga0208925_112128Not Available623Open in IMG/M
3300027223|Ga0208169_1055051Not Available723Open in IMG/M
3300027226|Ga0208309_1014489Not Available992Open in IMG/M
3300027245|Ga0208445_1021310Not Available667Open in IMG/M
3300027249|Ga0208175_1020612Not Available704Open in IMG/M
3300027264|Ga0255580_1127620Not Available680Open in IMG/M
3300027320|Ga0208923_1041619Not Available819Open in IMG/M
3300027406|Ga0208965_1094761Not Available596Open in IMG/M
3300027547|Ga0209864_1020309Not Available780Open in IMG/M
3300027631|Ga0208133_1040696Not Available1140Open in IMG/M
3300027631|Ga0208133_1101714Not Available671Open in IMG/M
3300027716|Ga0209682_10099846Not Available731Open in IMG/M
3300027776|Ga0209277_10018964All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana3167Open in IMG/M
3300027831|Ga0209797_10411805Not Available547Open in IMG/M
3300027833|Ga0209092_10190971Not Available1158Open in IMG/M
3300027840|Ga0209683_10355413Not Available674Open in IMG/M
3300027841|Ga0209262_10410302Not Available660Open in IMG/M
3300027883|Ga0209713_10992183Not Available521Open in IMG/M
3300027897|Ga0209254_11123561Not Available500Open in IMG/M
3300028598|Ga0265306_10042242Not Available2247Open in IMG/M
3300028598|Ga0265306_10764195All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua535Open in IMG/M
3300028600|Ga0265303_11174008Not Available638Open in IMG/M
3300029987|Ga0311334_10924508Not Available722Open in IMG/M
3300030715|Ga0308127_1002006All Organisms → cellular organisms → Eukaryota2135Open in IMG/M
3300031523|Ga0307492_10445863Not Available509Open in IMG/M
3300031725|Ga0307381_10039124Not Available1384Open in IMG/M
3300031784|Ga0315899_11750814Not Available508Open in IMG/M
3300032047|Ga0315330_10000510All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana24181Open in IMG/M
3300032126|Ga0307415_102203565Not Available539Open in IMG/M
3300032258|Ga0316191_11405022All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua504Open in IMG/M
3300032260|Ga0316192_11197998All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua507Open in IMG/M
3300032276|Ga0316188_10823922Not Available514Open in IMG/M
3300033524|Ga0316592_1047560Not Available956Open in IMG/M
3300033524|Ga0316592_1064891Not Available822Open in IMG/M
3300033524|Ga0316592_1082304Not Available733Open in IMG/M
3300033527|Ga0316586_1021899Not Available1059Open in IMG/M
3300033528|Ga0316588_1051901Not Available995Open in IMG/M
3300033528|Ga0316588_1108577Not Available698Open in IMG/M
3300034066|Ga0335019_0806278Not Available529Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine18.46%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous9.23%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.23%
Polar MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine5.13%
Wastewater EffluentEngineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent4.62%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine4.10%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment3.59%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.59%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere3.59%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water3.08%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.56%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.56%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.05%
Ice Edge, Mcmurdo Sound, AntarcticaEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica2.05%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment1.54%
Worm BurrowEnvironmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow1.54%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.54%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.54%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment1.54%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.54%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.03%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.03%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.03%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water1.03%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand1.03%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.51%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.51%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.51%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment0.51%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.51%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater0.51%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.51%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.51%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.51%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat0.51%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater0.51%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.51%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.51%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.51%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine0.51%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.51%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.51%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.51%
Pond SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil0.51%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.51%
CoralHost-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral0.51%
Ocean WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water0.51%
Microbial MatsEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Microbial Mats0.51%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2046860007Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - Microc enrich af exp to meth lab w 13Ccarbon-no added nitrateEnvironmentalOpen in IMG/M
3300000137Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10EnvironmentalOpen in IMG/M
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300000243Svalbard Archipelago station 2 sample NOR 18_50mEnvironmentalOpen in IMG/M
3300003566Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_07_M0_10 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005825Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBBEnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300005954Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_21-May-14EnvironmentalOpen in IMG/M
3300005987Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNAEngineeredOpen in IMG/M
3300006373Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006424Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006571Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007228Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300007230Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300007235Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 D RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300007239Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B2 RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300007248Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 D RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300007543Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3EnvironmentalOpen in IMG/M
3300007558Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733EnvironmentalOpen in IMG/M
3300007621Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3EnvironmentalOpen in IMG/M
3300007623Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MGEnvironmentalOpen in IMG/M
3300007651Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3EnvironmentalOpen in IMG/M
3300007665Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3EnvironmentalOpen in IMG/M
3300007725Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MGEnvironmentalOpen in IMG/M
3300008724Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone1_mRNAEnvironmentalOpen in IMG/M
3300008931Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1CEnvironmentalOpen in IMG/M
3300008936Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3BEnvironmentalOpen in IMG/M
3300008938Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 4AEnvironmentalOpen in IMG/M
3300008958Marine microbial communities from eastern North Pacific Ocean - P1 particle-associatedEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009003Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725EnvironmentalOpen in IMG/M
3300009055Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009141Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3EnvironmentalOpen in IMG/M
3300009221Microbial communities of water from Amazon river, Brazil - RCM2EnvironmentalOpen in IMG/M
3300009252Microbial communities of water from Amazon river, Brazil - RCM16EnvironmentalOpen in IMG/M
3300009254Microbial communities of water from Amazon river, Brazil - RCM20EnvironmentalOpen in IMG/M
3300009257Microbial communities of water from Amazon river, Brazil - RCM22EnvironmentalOpen in IMG/M
3300009327Microbial communities of water from the North Atlantic ocean - ACM30EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009543Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009592Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009728Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_213_2m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009739Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_194_18m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009757Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_205_2m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012408Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA23.A_192.20151118 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012412Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA24.B_192.20151118 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012413Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA6.ICE_1m.20151110 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012415Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA15.ICE_1m.20151115 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012417Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA13.B_72.20151113 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012418Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA12.A_72.20151113 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012419Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012472Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012518Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012523Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012528Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300012965Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012968Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300016731Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016740Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041413YT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300018515Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001372 (ERX1782216-ERR1712231)EnvironmentalOpen in IMG/M
3300018649Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001440 (ERX1782476-ERR1712161)EnvironmentalOpen in IMG/M
3300018692Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001382 (ERX1782155-ERR1712153)EnvironmentalOpen in IMG/M
3300018711Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_143 - TARA_N000003139 (ERX1782287-ERR1712099)EnvironmentalOpen in IMG/M
3300018794Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001823 (ERX1782102-ERR1711992)EnvironmentalOpen in IMG/M
3300018813Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000809 (ERX1782297-ERR1712172)EnvironmentalOpen in IMG/M
3300018964Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000939 (ERX1782328-ERR1712130)EnvironmentalOpen in IMG/M
3300018980Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001372 (ERX1782312-ERR1712127)EnvironmentalOpen in IMG/M
3300019010Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001428 (ERX1809462-ERR1739838)EnvironmentalOpen in IMG/M
3300019022Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001390 (ERX1782474-ERR1712194)EnvironmentalOpen in IMG/M
3300019111Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002817 (ERX1782321-ERR1712210)EnvironmentalOpen in IMG/M
3300019133Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001377 (ERX1782440-ERR1712071)EnvironmentalOpen in IMG/M
3300019153Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001019 (ERX1789708-ERR1719469)EnvironmentalOpen in IMG/M
3300019191Estuarine microbial communities from the Columbia River estuary - R.880 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019200Estuarine microbial communities from the Columbia River estuary - R.1175 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019201Estuarine microbial communities from the Columbia River estuary - R6.10AS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019214Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019253Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101410AT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019715Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_2-3_MGEnvironmentalOpen in IMG/M
3300019717Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_8-9_MGEnvironmentalOpen in IMG/M
3300019726Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_10-11_MGEnvironmentalOpen in IMG/M
3300019739Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_8-9_MGEnvironmentalOpen in IMG/M
3300019741Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_6-7_MGEnvironmentalOpen in IMG/M
3300019747Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_5-6_MGEnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300019764Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_6_MGEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300021093Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surfaceEnvironmentalOpen in IMG/M
3300021282Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1035 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021296Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R881 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021298Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.460 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021299Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1034 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021305Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R868 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021316Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.485 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021323Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R9.63AS (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021350Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021353Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021359Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021501Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_1-2_MGEnvironmentalOpen in IMG/M
3300021845Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R876 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021947Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022206Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022369Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1119 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022372Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R8.46A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022549Cold Creek_combined assemblyEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024537Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025577Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)EnvironmentalOpen in IMG/M
3300025872Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026185Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_C_black_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027194Estuarine microbial communities from the Columbia River estuary - metaG S.751 (SPAdes)EnvironmentalOpen in IMG/M
3300027203Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027223Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027226Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027245Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027249Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027264APAL treatment metatranscriptome co-assemblyHost-AssociatedOpen in IMG/M
3300027320Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)EnvironmentalOpen in IMG/M
3300027406Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027547Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 (SPAdes)EnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027716Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027776Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA (SPAdes)EngineeredOpen in IMG/M
3300027831Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027840Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027841Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027883Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027897Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)EnvironmentalOpen in IMG/M
3300028598Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028600Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300029987I_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030715Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1295_SCM (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031523Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SI3LEnvironmentalOpen in IMG/M
3300031725Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-1.R1 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300032047Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032258Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cmEnvironmentalOpen in IMG/M
3300032260Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrowEnvironmentalOpen in IMG/M
3300032276Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1EnvironmentalOpen in IMG/M
3300033524Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033527Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033528Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LWAeNNiSIP_334702046860007Freshwater SedimentMISNFDFNFKNTPTLTLELPFSEHIEELRQRIIHIFWIILLLSLLVIY
LP_F_10_SI03_10DRAFT_104235023300000137MarineMVTNSDFNFTNNEAIILELPFSEHIEELRQRLFHIFWIILFL
LPaug08P2610mDRAFT_103370023300000159MarineMVANSDFNFTTNEIVTLELPFSEHMEELRQRFFHIFWIILLLTFIAFV
SA_S2_NOR18_50mDRAFT_104988823300000243MarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHTFWTILFLTSI
Ga0008455J51687_100410633300003566SeawaterMITNSDFNFKKNELVTLELPFSEHIEELRQRIFHIFWIILLLTCA
Ga0068876_1073092813300005527Freshwater LakeMPTNSNFNFTNNSIVTLELPFSEHVEELRQRLFLMVGIVLVFT
Ga0074476_102564913300005825Sediment (Intertidal)MVTNSNFNFTNNKIVTLELPFSEHIEELRQRIFLLFWVI
Ga0074476_105910813300005825Sediment (Intertidal)MVANLDFNFEKNDENLTLELPFSEHVEELRQRISHLFWVV
Ga0074476_159956413300005825Sediment (Intertidal)MVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLTCIASRRA
Ga0070743_1002357013300005941EstuarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLTCAAF
Ga0073925_100745633300005954SandMTSNFDFNFKNTPNLTLELPFSEHIEELRQRIIHIFCIILVLS
Ga0075158_1027963413300005987Wastewater EffluentMATNSNFNFTNNTNVTLELPFSEHIEELRQRIFLLFW
Ga0075483_128789813300006373AqueousMVTNSDFNFTIDESVTLELPFSEHIEELRQRIFHTFWIILLL
Ga0075497_104643733300006424AqueousMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLTCA
Ga0075505_100943033300006571AqueousMVANSDFNFTNNETVTLELPFSEHIEELRQRLFHI
Ga0075467_1047880013300006803AqueousMITNSDFNFKKNELVTLELPFSEHIEELRQRIFHIFWVILLLTC
Ga0075467_1069133213300006803AqueousMVTNSDFNFTKNEIVTLELPFSEHIEELRQRIFHIFWVILILSCLAFF
Ga0075479_1023135613300006870AqueousMITNSDFNFKNNETLTLELPFSEHIEELRQRSFHIFWIVLLLTCA
Ga0075475_1006030413300006874AqueousMVTNSDFNFTKNESVTLELPFSEHIEELRQRIFHIF
Ga0075472_1046591213300006917AqueousMVTNSDFNFTNNETVTLELPFSEHIEELRQRLFHIFWI
Ga0075175_105732023300007228Wastewater EffluentMTTNSNFNFTKNSIITLELPFSEHIEELRQRIFLVFGI
Ga0075175_109815213300007228Wastewater EffluentMVSNLDFNFKNNATLTLELPFSEHIEELRQRISHIFWIILLLSFLAFF
Ga0075179_108131323300007230Wastewater EffluentMTTNSNFNFTKNSIITLELPFSEHIEELRQRIFLV
Ga0075179_109546013300007230Wastewater EffluentMVTNSDFNFTNNETVTLELPFSEHIEELRQRLFHIV
Ga0075184_1012579313300007235Wastewater EffluentMVSNLDFNFKNNATLTLELPFSEHIEELRQRISHIFWIILLLSF
Ga0075171_104538233300007239Wastewater EffluentMVANLDFNFKKNNDNLTLELPFSEHVEELRQRISHIFWVILLLTCVAFF
Ga0075168_106783013300007248Wastewater EffluentMVANLDFNFKKNNDNLTLELPFSEHVEELRQRISHIFWVILLLTCV
Ga0102853_112108413300007543EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILFLTCIA
Ga0102822_118140023300007558EstuarineMVKNSDFNFTDNATVTLELPFSEHIEELRQRFFHIFWIILFLTC
Ga0102872_115104013300007621EstuarineMVKNSDFNFTDNATVTLELPFSEHIEELRQRFFHIFWII
Ga0102948_120242613300007623WaterMTTNSNFNFTNNSTVTLELPFSEHIEELRQRIFLV
Ga0102900_101651713300007651EstuarineMISNFDFNFKNTPTLTLELPFSEHIEELRQHIIHIFWIILLLSLLA
Ga0102908_103870413300007665EstuarineMVKNSDFNFTDNATVTLELPFSEHIEELRQRFFHIFWIILL
Ga0102908_113004523300007665EstuarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFL
Ga0102951_124460623300007725WaterMVKNSDFNFTDTSTVTLELPFSEHIEELRQRFFHIFWIILFLTCV
Ga0103785_10552023300008724Microbial MatsMTTNSNFNFTNNTAITLELPFSEHIEELRQRIFVVF
Ga0103734_100169313300008931Ice Edge, Mcmurdo Sound, AntarcticaMVANADFNFVNKNLLTLELPFSEHIEELRQRIFHIAWIILL
Ga0103739_101545513300008936Ice Edge, Mcmurdo Sound, AntarcticaMITNSDFNFQQNEAVTLELPFTEHIEELRQRLFHIVWVILILTCV
Ga0103741_100306913300008938Ice Edge, Mcmurdo Sound, AntarcticaMVTNSDFNFGKNKDITLELPFSEHVKELRQRIFHIFC
Ga0103741_100533333300008938Ice Edge, Mcmurdo Sound, AntarcticaMVANADFNFVNKNLLTLELPFSEHIEELRQRIFHIAWII
Ga0104259_101657613300008958Ocean WaterMVKNSDFNFTNTETVILELPFSEHIEELRQRLFHIFWIILFLTDR
Ga0102963_125371713300009001Pond WaterMTTNSNFNFTNNSTNTLELPFSEHIEELRQRIFLVFGIILLLTC
Ga0102813_122878413300009003EstuarineMVTNSDFNFKNNETLTLELPFTEHIEELRQRCFHI
Ga0102905_112560413300009055EstuarineMVANSDFNFKNNETLTLELPFSEHIEELRQRCFHIFWIIVLLTCVA
Ga0102854_110773813300009058EstuarineMVTNSNFNFTNNTSITLELPFSEHIEELRQRLFLLFWIILLLT
Ga0115566_1051335923300009071Pelagic MarineMTTNSNFNFRTNTTVTLELPFSEHIEELRQRIFLVFGIVLLLT
Ga0102814_1051217513300009079EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIF
Ga0102812_1080269013300009086EstuarineMTTNSNFNFINNTSVILELPFSEHIEELRQRIFLV
Ga0102884_109435223300009141EstuarineMVTNSNFNFTNNTIITLELPFSEHIEELRQRIFHLFWIILLLT
Ga0103849_105536323300009221River WaterMVANFDFKFKTNPTLTLELPFSEHIEELRQRISHIFWIILL
Ga0103849_106188023300009221River WaterMISNFDFNFKNTPTLTLELPFAEHIEELRQRIIHIFCIILL
Ga0103863_1003728223300009252River WaterMVSNFDFNFRNSITLNLELPFSEHTEELRQRIAHIFLIILLLSI
Ga0103867_104328413300009254River WaterMVTNSDFNFTNNETVILELPFSEHIEELRQRIFHIFGIVLILTIFFFF*
Ga0103869_1006347223300009257River WaterMISNFDFNFKNTPTLTLELPFAEHIEELRQRIIHIFLDNFII*
Ga0103843_10119813300009327River WaterMITNSDFNFKKNEIVTLELPFSEHIEELRQRIFHIFWIIL
Ga0115548_101439073300009423Pelagic MarineMVTNSDFNFKNNETLTLELPFSEHIEELRQRCFHIFW
Ga0115005_1100500223300009432MarineMITNSDFNFQQNETVTLELPFTEHIEELRQRLFHI
Ga0115099_1043294933300009543MarineMVTNSDFNFATNETVTLELPFSEHMEELRQRIFHIFWIVLLLTSIAFF*
Ga0115101_125991113300009592MarineMITNSDFNFKKNETVTLELPFSEHIEELRQRLFHIF
Ga0115101_185129623300009592MarineMITNLDFNFSNNKTVTLELPFSEHIEELRQRLFHIFW
Ga0115102_1023410063300009606MarineMIKNSDFNFTNTETVVLELPFSEHVEELRQRLFTYFG*
Ga0115100_1016154243300009608MarineMVTNSDFNFTNNEAVSLELPFSEHIEELRQRLFHIFWITLFFNVYSVY*
Ga0123371_16555133300009728MarineMITNSDFNFKKNEIVTLELPFSEHIEELRQRIFHIFWIILLL
Ga0123362_105874013300009739MarineMPANSNFNFTNNSVVTLELPFSEHVEELRQRIFLIV
Ga0123367_120628833300009757MarineMITNSDFNFRKKETLTLELPFSEHIEELRQRIFHIFWIILLL
Ga0138265_107445323300012408Polar MarineMITNSDFNFGENKDTTLELPFSEHVEELRQRIFHIFWTILLL
Ga0138265_122484813300012408Polar MarineMPTTSNFNFTNNSVVTLELPFSEHVEELRQRIFLIV
Ga0138266_112205013300012412Polar MarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHTFW
Ga0138258_115019823300012413Polar MarineMPTTSNFNFTNNSVVTLELPFSEHVEELRQRIFLIVGII
Ga0138263_102575213300012415Polar MarineMITNSNFNFVNNTYVTLELPFSEHMEELRQRIFLLFGIILALTC
Ga0138263_146791713300012415Polar MarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIF
Ga0138262_134506413300012417Polar MarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFW
Ga0138262_139306833300012417Polar MarineMVTNSDFNFKSNETLTLELPFSEHIEELRQRFFHIFWIILFLTCLSFF*
Ga0138261_134755333300012418Polar MarineMVTNSDFNFKKTDKLIFELPFYEHIEELRQRIFHIFWIVLFLTCA
Ga0138260_1046424213300012419Polar MarineMITNSDFNFGENKDTTLELPFSEHVEELRQRIFHIFWTILLLTC
Ga0129328_107714313300012472AqueousMATNSNFNFKNNETLTFELPFSEHVEELRQRCFHACWITLFLSCFTFF
Ga0129349_135310813300012518AqueousMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILF
Ga0129350_147482043300012523AqueousMVTNSDFNFTVNETVTLELPFSEHIEELRQRIFHTFWIILLLTCIAFF*
Ga0129353_168671813300012525AqueousMLTNSDFNFKNNHTSILELPFSEHIEELRQRCFHIFSIILVL
Ga0129352_1064423013300012528AqueousMITNSDFNFRKNETVTLELPFSEHIEELRQRILHIF
Ga0163179_1165511413300012953SeawaterMVANSDFNFKNNETLTLELPFSEHIEELRQRCFHIFWIIVFLT*
Ga0129346_123764513300012965AqueousMVTNSDFNFTKNEIVTLELPFSEHIEELRQRTFHIFWVI
Ga0129337_129831713300012968AqueousMVANSDFNFKRNETVILELPFSEHIEELRLRIFQIFWIILFLTCISFFE
Ga0129337_132555013300012968AqueousMATNSNFNFTNNSIITLELPFSEHIEELRQRIFLVF
Ga0129337_138256013300012968AqueousMPTNSNFNFTNNSIVTLELPFSEHVEELRQRIFLIVG
Ga0170791_1091235823300013295FreshwaterMVTNSDFNFTNNEALILELPFSEHIEELRQRLFHIFWIILFL
(restricted) Ga0172376_1067597823300014720FreshwaterMITNSDFNFKKNETVTLELPFSEHIEELRQRIFHIFITILFLT
Ga0182094_124680913300016731Salt MarshMVTNSDFNFATNETVTLELPFSEHMEELRQRIFHIFWIVL
Ga0182094_126648413300016731Salt MarshMVKNSDFNFTDTSTVTLELPFSEHIEELRQRFFHIFWIIL
Ga0182096_101046933300016740Salt MarshMITNSDFNFKKNETVTLELPFSEHIEELRQRIFHIFWIILLLTC
Ga0181397_117490313300017744SeawaterMITNSDFNFKKNETVTLELPFSEHIEELRQRIFHVFWIILMLTCIA
Ga0181407_100214383300017753SeawaterMLTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLTCLAFI
Ga0181407_111536413300017753SeawaterMITNSDFNFQKNEAVTLELPFSEHIEELRQRLFHIVWIV
Ga0192960_10425823300018515MarineMITNSDFNFKKNETVTLELPFSEHIEELRQRVFHI
Ga0192969_104938723300018649MarineMVTNSHFNFTKTETITLELPFSEHIEELRQRLFHTFWIIL
Ga0192944_100108013300018692MarineMVTNSDFNFGKNKEITLELPFSEHVEELRQRIFHIF
Ga0193069_100323943300018711MarineMITNSDFNFKKNEIVTLELPFSEHIEELRQRIFHI
Ga0193357_106068513300018794MarineMMTNSDFNFKKNDILTLELPFSEHIEELRQRIFHIFWIIFLLTCIAF
Ga0192872_102097613300018813MarineMITNSNFNFKKNYPLTLELPFSEHIEELRQRLFHIV
Ga0193087_1016082223300018964MarineMITNSDFNFQQNDASTLELPFSEHIEELRQRLFHIVWVILILTCVAFF
Ga0192961_1000015783300018980MarineMVTNSDFNFTKNEIVTLELPFSEHIEELRQRIFHIFWVILILSCLA
Ga0193044_1000738733300019010MarineMVANTDFNFKTKDPLTLELPFSEHIEELRQRSFHIIC
Ga0192951_1002991533300019022MarineMLTNSDFNFKNNQTLTLELPFSEHIEELRQRCFHIFWVTLILTCI
Ga0193541_100057133300019111MarineMPTTSNFNFTNNSVVMLELPFSEHVEELRQRIFLIIGI
Ga0193089_100009383300019133MarineMVTNSDFNFTKNESVTLELPFSEHIEELRQRIFHIFG
Ga0192975_1031049923300019153MarineMVANADFNFVNKNLLTLELPFSEHIEELRQRIFHIAW
Ga0180035_107472123300019191EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWI
Ga0180036_104241013300019200EstuarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLTC
Ga0180032_101909133300019201EstuarineMTTNSNFNFTKNSIITLELPFSEHIEELRQRIFLVFGIILLLTCF
Ga0180032_106244413300019201EstuarineMTTNSNFNFTNNSIITLELPFSEHIEELRQRIFLVF
Ga0180037_119596823300019214EstuarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLTCI
Ga0182064_146527633300019253Salt MarshMTISSDFNFKENYKSTLELPFSEHVEELRQRSFQVFWIILLL
Ga0193966_101186833300019715SedimentMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILLL
Ga0193972_105200323300019717SedimentMVKNSDFNFTDTSTVTLELPFSEHIEELRQRFFHIFWIILFL
Ga0193974_100437013300019726SedimentMVKNSDFNFTDTSTVTLELPFSEHIEELRQRFFHIF
Ga0194012_101568613300019739SedimentMVKNSDFNFTDTSTVTLELPFSEHIEELRQRFFHIFWIILFLTCVAF
Ga0194020_101995513300019741SedimentMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILFLT
Ga0193978_100581033300019747SedimentMVTNSDFNFTVNETVTLELPFSEHIEELRQRIFHTFWIILLLTCIAFF
Ga0194023_108667113300019756FreshwaterMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILFLTC
Ga0193963_114828113300019764Freshwater Microbial MatMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIIL
Ga0194110_1081526523300020084Freshwater LakeMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILF
Ga0194123_1032792823300021093Freshwater LakeMTNNSNFNFTSNTAVTLELPFSEHIEELRQRIFLLFWIILLLT
Ga0210303_111306723300021282EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHI
Ga0210300_10003513300021296EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILFL
Ga0210349_103049613300021298EstuarineMAINSNFNFTNNSIITLELPFSEHIEELRQRIFLVFG
Ga0210349_113511113300021298EstuarineMTTNSNFNFKTNTMVTLELPFPEHIEELRQRIFLLFWVILLLTGV
Ga0210302_100750813300021299EstuarineMTSNFDFNFKNTPNLTLELPFSEHIEELRQRIIHIFCIILV
Ga0210296_100198533300021305EstuarineMVTNSDFNFTITETVTLELPFSEHIEELRQRIFHTFWIILLL
Ga0210351_128335313300021316EstuarineMTTNSNFNFTKNSIITLELPFSEHIEELRQRIFLVFGIILL
Ga0210295_104095513300021323EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIIL
Ga0213867_105779913300021335SeawaterMVKNLDFNFTDNATVTLELPFSEHIEELRQRFFHIFW
Ga0206692_146858313300021350SeawaterMITNSDFNFRKKETLTLELPFSEHIEELRQRIFHI
Ga0206693_182335913300021353SeawaterMVTNSNFNFTNQKTIILELPFSEHIEELRQRFFLLFWIILVLT
Ga0213858_1043770423300021356SeawaterMVTNSDFNFTKNESVTLELPFSEHIEELRQRIFHIFW
Ga0213858_1052711523300021356SeawaterMESKVIVKNSDFSFDNSLTSNYELPFSEHIEELRQRIFHLFW
Ga0206689_1053864933300021359SeawaterMVTNSDFNFTNNEAVSLELPFSEHIEELRQRLFHIFWI
Ga0213859_1030545813300021364SeawaterMVTNSDFNFTNNEAIILELPFSEHIEELRQRLFHIF
Ga0206123_1034565813300021365SeawaterMITNSDFNFKNNETLTLELPFSEHIEELRQRSFHIFWIVLLLTCAA
Ga0213860_1012980233300021368SeawaterMVTNSDFNFTINETATLELPFSEHIEELRQRIFHTFWIILLL
Ga0213868_1038958413300021389SeawaterMVANSDFNFKNNAVLTLELPFSEHIEELQQRTFHMFWIIILLT
Ga0213866_1051274023300021425SeawaterMPTNSNFNFTNNSVVTLELPFSEHVEELRQRLFLIVGVILLFTCF
Ga0193948_102033033300021501SedimentMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWITLFL
Ga0210297_110277813300021845EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILFLTCI
Ga0213856_114519833300021947WatershedsMATNSNFNFTNNSIITLELPFSEHIEELRQRIFLVFGIILLLTSFA
Ga0224499_1000732813300022206SedimentMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWII
Ga0210310_101007913300022369EstuarineMPTNSNFNFTNNSVVTLELPFSEHVEELRQRIFLIV
Ga0210293_13049023300022372EstuarineMVTNSDFNFINSETVILELPFSEHIEELRQRLFHIICIILVL
Ga0212091_1007607113300022549GroundwaterMATNSNFNFTNNTTVTLELPFSEHIEELRQRIFLLF
Ga0244777_1052416013300024343EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFW
Ga0244775_1032401233300024346EstuarineMVTNSDFNFINSETVILELPFSEHIEELRQRLFHIIC
Ga0244775_1149565313300024346EstuarineMVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWII
Ga0255225_107293613300024537FreshwaterMVTNSDFNFTNNDTVTLELPFSEHIEELRQRLFHIVWIILLLTCVA
Ga0209304_102643813300025577Pelagic MarineMVTNSDFNFKNNETLTLELPFSEHIEELRQRCFHI
Ga0208783_1014897833300025872AqueousMVKNTDFNFTNNATLTLELPFSEHIEELRQRFFHI
Ga0209949_100686613300026185Pond SoilMTTNSNFNFIDNTAVTLELPFSEHIEELRQRVFLLFWVI
Ga0208799_101756413300027194EstuarineMNSKIIVKNSDFSFNNNLTSNYELPFSEHIEELRQRIFHLF
Ga0208925_11212813300027203EstuarineMISNFDFNFKNTPTLTLELPFSEHIEELRQRIIHIFWIILL
Ga0208169_105505123300027223EstuarineMISNFDFNFKNTPTLTLELPFSEHIEELRQRIIHIFWIILLLPEFQIIY
Ga0208309_101448933300027226EstuarineMITNSDFNFQENEAVTLELPFSEHIEELRQRLFHIVWI
Ga0208445_102131013300027245EstuarineMPTNSNFNFTNNSVVTLELPFSEHVEELRQRIFLIVGVILLFSFF
Ga0208175_102061213300027249EstuarineMVKNSDFNFTDNATVTLELPFSEHIEELRQRFFHIFWIIL
Ga0255580_112762013300027264CoralMTTNSNFNFTKNSIITLELPFSEHIEELRQRIFLVFGIIL
Ga0208923_104161913300027320EstuarineMVTNSNFSFTKNTNVVLELPFSEHIEELRQRLLLLFLTI
Ga0208965_109476113300027406MarineMPMTSNFNFTNNSVVTLELPFSEHVEELRQRFFLIIGIILLFTCFA
Ga0209864_102030913300027547SandMVTNSNFNFTNNTIVTLELPFSEHIEELRQRIFLLFWII
Ga0208133_104069633300027631EstuarineMVTNSNFSFTKNTNVVLELPFSEHIEELRQRLLLLFLTILL
Ga0208133_110171423300027631EstuarineMVTNSDFNFTNNETVILELPFSEHIEELRQRVFHIFWI
Ga0209682_1009984613300027716Wetland SedimentMATNSNFNFTNNITVTLELPFSEHIEELRQRIFLLFWIILLL
Ga0209277_1001896413300027776Wastewater EffluentMTTNSNFNFTKNSIITLELPFSEHIEELRQRIFLVFG
Ga0209797_1041180513300027831Wetland SedimentMTTNSNFNFTNNTTVTLELPFSEHIEELRQRIFLL
Ga0209092_1019097133300027833MarineMLTNSNFNFTNNSVVTLELPFSEHVEELRQRIFLIVGVIL
Ga0209683_1035541323300027840Wetland SedimentMATNSNFNFTNNITVTLELPFSEHIEELRQRIFLLFWIILLLTC
Ga0209262_1041030213300027841FreshwaterMTTNSNFNFIKNTTVTLELPFSEHIEELRQRIFLLF
Ga0209713_1099218323300027883MarineMVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWI
Ga0209254_1112356113300027897Freshwater Lake SedimentMTSNFDFNFKNTPTLTLELPFSEHIEELRQRIIHIFWIILLLSLLAFVE
Ga0265306_1004224213300028598SedimentMVTNSNFNFTNNTIITLELPFSEHIEELRQRIFILFWLIL
Ga0265306_1076419523300028598SedimentMATNSNFNFTNNTNVTLELPFSEHIEELRQRIFLLFWIILLLTCIS
Ga0265303_1117400823300028600SedimentMVTNSDFNFTTNETVTLELPFSEHMEELRQRIFHIFWIV
Ga0311334_1092450833300029987FenMVTNSNFNFTNNTIVTLELPFSEHIEELRQRIFLLFW
Ga0308127_100200613300030715MarineMITNSDFSFNNDQGSNFELPFSEHIEELRQRIFHLFWVIL
Ga0307492_1044586313300031523Sea-Ice BrineMTTNSNFNFTNNTIVTLELPFSEHIEELRQRIFLVF
Ga0307381_1003912413300031725MarineMPTNSNFNFTNNSVVTLELPFSEHVEELRQRIFLIVGLILIFTCF
Ga0315899_1175081423300031784FreshwaterMPTNSNFNFTNNSIVTLELPFSEHVEELRQRLFLMVG
Ga0315330_10000510263300032047SeawaterMVTNSDFNFTNNEAIILELPFSEHIEELRQRLFHIFWI
Ga0307415_10220356513300032126RhizosphereMTTNSNFNFPKTSTIQLELPFSEHIEELRQRTFLVFVVIILLT
Ga0316191_1140502213300032258Worm BurrowMVTNSNFNFTNNTIITLELPFSEHIEELRQRIFILFWLILVLTCV
Ga0316192_1119799813300032260Worm BurrowMVTNSNFNFTNNTIITLELPFSEHIEELRQRIFILFWLILILTC
Ga0316188_1082392213300032276Worm BurrowMATNSNFNFTNNTAVTLELPFSEHIEELRQRIFLLFWII
Ga0316592_104756033300033524RhizosphereMVTNSNFNFTNNTALTLELPFSEHIEELRQRIFLVFWIILLLT
Ga0316592_106489133300033524RhizosphereMPVNSNFNFTDNSVVTLELPFSEHVEELRQRIFLVVGI
Ga0316592_108230413300033524RhizosphereMTTNSNFNFITNTTIALELPYPEHIEELRQRIFLLFWI
Ga0316586_102189913300033527RhizosphereMVTNSNFNFTNNTIITLELPFSEHIEELRQRIFALFWIILLLTCAA
Ga0316588_105190113300033528RhizosphereMTTNSNFNFIDNTAVTLELPFSEHIEELRQRIVLL
Ga0316588_110857713300033528RhizosphereMVTNSNFNFTNNTAITLELPFSEHIEELRQRIFIVFWVILLLT
Ga0335019_0806278_387_5273300034066FreshwaterMVTNSDFNFTNNEAVLLELPFSEHIEELRQRLFHIFWIILFLTCIAF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.