7000000618: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994

Overview

Basic Information

• IMG/M Taxon OID: 7000000618
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053192 | Ga0031351
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132257064
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella → Catonella massiliensis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-076	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F040149	Metagenome	162	N
F046432	Metagenome	151	Y
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F092230	Metagenome	107	N
F094006	Metagenome	106	Y
F095629	Metagenome	105	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F099454	Metagenome	103	N
F105376	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2964407	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	781
C2996847	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1105
C3028884	Not Available	2316
C3029880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	2423
C3030118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella → Catonella massiliensis	2448
SRS062544_LANL_scaffold_16357	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	25372
SRS062544_LANL_scaffold_24581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-076	8640
SRS062544_LANL_scaffold_37060	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	5916
SRS062544_LANL_scaffold_42584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1222
SRS062544_LANL_scaffold_4506	Not Available	6708
SRS062544_LANL_scaffold_51124	Not Available	1613
SRS062544_LANL_scaffold_51458	All Organisms → cellular organisms → Bacteria	2025
SRS062544_LANL_scaffold_63279	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	9582
SRS062544_LANL_scaffold_66231	Not Available	819
SRS062544_LANL_scaffold_6688	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1191
SRS062544_LANL_scaffold_74131	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	6121

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2964407	C2964407__gene_181968	F105380	EGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRSPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVSTYEEFIEWTKNTNWLK
C2996847	C2996847__gene_195853	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEVLREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSPVFCDNLRKALVRCSDNHKQVILNRSMLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYEVNS
C3028884	C3028884__gene_213171	F032313	MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNS
C3029880	C3029880__gene_213861	F073671	MNKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGQK
C3030118	C3030118__gene_214018	F092230	MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGNVEVSDSTSTGEVQNTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSD
SRS062544_LANL_scaffold_16357	SRS062544_LANL_scaffold_16357__gene_21672	F095629	MRELIICVCLLGCFGIANANNVEQPKEVKIVHNDNSVALHKKIYQLEKRIERLEELLKKEGK
SRS062544_LANL_scaffold_24581	SRS062544_LANL_scaffold_24581__gene_31320	F105376	MNNTNKEVSAKEFGALEADVRHIKEGVDKHTITLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEVEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK
SRS062544_LANL_scaffold_37060	SRS062544_LANL_scaffold_37060__gene_45415	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILSSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS062544_LANL_scaffold_42584	SRS062544_LANL_scaffold_42584__gene_52044	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVL
SRS062544_LANL_scaffold_4506	SRS062544_LANL_scaffold_4506__gene_5917	F084362	MSLMNCTFTVRWSDDKNKPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDNPSETDAEQKGFWWEK
SRS062544_LANL_scaffold_51124	SRS062544_LANL_scaffold_51124__gene_62224	F084342	HIVSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS062544_LANL_scaffold_51458	SRS062544_LANL_scaffold_51458__gene_62594	F046432	MWGMTESELSEIISKYQLPMDDYLVEVGGAFGRGEFFWIIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRRIETLELASDAEDEISKYLFGMYSIFEIKS
SRS062544_LANL_scaffold_63279	SRS062544_LANL_scaffold_63279__gene_77672	F094006	MAEELAKAPLTALSRARVAAMWSALEPAGPTGALYESAVCVEAHIGELQTGGIACRGLFAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELFAKELEYAFNFGA
SRS062544_LANL_scaffold_66231	SRS062544_LANL_scaffold_66231__gene_82350	F105376	MDKNNEQPEVSAKEFGALQANVEHIKEGVDKHTITLERIENIARANVTQSQLKTYIAEHEKEAEEKYVKRTEIEDVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQTQVRSK
SRS062544_LANL_scaffold_6688	SRS062544_LANL_scaffold_6688__gene_8878	F095633	LAMEATEELKKTTIRKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDADRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKII
SRS062544_LANL_scaffold_74131	SRS062544_LANL_scaffold_74131__gene_99455	F099454	MALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK