7000000599: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1

Overview

Basic Information

• IMG/M Taxon OID: 7000000599
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053171 | Ga0031280
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72135333
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella bryantii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F055792	Metagenome	138	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F094006	Metagenome	106	Y
F095633	Metagenome	105	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2620538	Not Available	587
C2627044	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	643
SRS019022_WUGC_scaffold_14538	All Organisms → Viruses → Predicted Viral	3692
SRS019022_WUGC_scaffold_21050	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	35224
SRS019022_WUGC_scaffold_25573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	51710
SRS019022_WUGC_scaffold_26233	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	36686
SRS019022_WUGC_scaffold_29076	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	36982
SRS019022_WUGC_scaffold_35973	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella bryantii	5812
SRS019022_WUGC_scaffold_51830	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	11549
SRS019022_WUGC_scaffold_52604	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	13069
SRS019022_WUGC_scaffold_61444	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	834
SRS019022_WUGC_scaffold_61976	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	978
SRS019022_WUGC_scaffold_65918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	16823

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2620538	C2620538__gene_110836	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTNKNKGQK
C2627044	C2627044__gene_112867	F095633	MGNYEKSTEAWRREGLTEGELRTMGALAVEATEELKKTTIRKEVVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN
SRS019022_WUGC_scaffold_14538	SRS019022_WUGC_scaffold_14538__gene_12016	F067846	MSIIAEWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILNY
SRS019022_WUGC_scaffold_21050	SRS019022_WUGC_scaffold_21050__gene_19111	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS019022_WUGC_scaffold_25573	SRS019022_WUGC_scaffold_25573__gene_24104	F094006	MWSTLEPAGPTGALYEPAVCVEAHIGELQAGSIARRGLFAFGRSNVLAVAELGAKAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
SRS019022_WUGC_scaffold_26233	SRS019022_WUGC_scaffold_26233__gene_24926	F043235	MDEVVASDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYYRSHGFKGGRSMTSNVLLPGSAH
SRS019022_WUGC_scaffold_29076	SRS019022_WUGC_scaffold_29076__gene_28324	F098763	MDRRASLRILSPALYLATKFFKAVVRTTISYDPSDEVEGKGGMNAIPTAVDE
SRS019022_WUGC_scaffold_35973	SRS019022_WUGC_scaffold_35973__gene_36474	F032313	MYRFLILIFAITLMACDNNTPQGKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS019022_WUGC_scaffold_35973	SRS019022_WUGC_scaffold_35973__gene_36475	F032313	MACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK
SRS019022_WUGC_scaffold_51830	SRS019022_WUGC_scaffold_51830__gene_56869	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
SRS019022_WUGC_scaffold_51830	SRS019022_WUGC_scaffold_51830__gene_56870	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLGAENGVIAEAMVTRALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDYLQTPREEGTDLLQLMSIIARKYQLFHTFVS
SRS019022_WUGC_scaffold_52604	SRS019022_WUGC_scaffold_52604__gene_57835	F080164	MFCALFQIISNSFSIFASKFNYPLSRNSRFVSFMRPTSFVLFILLWMVGLTLSAAPQVTLRERANAFPLITEKDPSEIYAPYAWRLPVVPLRLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLFLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS019022_WUGC_scaffold_61444	SRS019022_WUGC_scaffold_61444__gene_71309	F078842	SIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKSLSLSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGG
SRS019022_WUGC_scaffold_61976	SRS019022_WUGC_scaffold_61976__gene_72304	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAEEFGKKGVYE
SRS019022_WUGC_scaffold_65918	SRS019022_WUGC_scaffold_65918__gene_82472	F047508	MLGHRLVEGRVKYPYLRDLGEHLRHGFDTEDVGWVVKRSELGALMEHIYYLWGDTYALSKALCTVYKAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKELYYMVRCELILSSP