7000000561: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675

Overview

Basic Information

• IMG/M Taxon OID: 7000000561
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053120 | Ga0031324
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59860823
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F073671	Metagenome	120	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2301924	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	534
C2321547	Not Available	681
C2336650	Not Available	897
C2356028	Not Available	1862
SRS057355_LANL_scaffold_18987	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	592
SRS057355_LANL_scaffold_22045	All Organisms → cellular organisms → Bacteria	1924
SRS057355_LANL_scaffold_33617	Not Available	569
SRS057355_LANL_scaffold_40971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1887
SRS057355_LANL_scaffold_44038	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	608
SRS057355_LANL_scaffold_8101	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1815

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2301924	C2301924__gene_83036	F051211	IRDLPYGTSGSDEVWSCYQKCVLLKQELQHIDITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C2321547	C2321547__gene_91447	F067846	MASFTAYDKEQEQYDAYERAVEMEIESIKEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDCRKGYILND
C2336650	C2336650__gene_98459	F047508	IWEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
C2356028	C2356028__gene_109046	F105376	MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAITELQEEVQQTVRRK
SRS057355_LANL_scaffold_18987	SRS057355_LANL_scaffold_18987__gene_12936	F094006	MRGALEPADPTGALYESVVSEEAHIGELQAGGISRRDLFALGWSNVLAVAELGAEAPHAIDMYDIAVCEPLSELFGEELEYAFNFGA
SRS057355_LANL_scaffold_22045	SRS057355_LANL_scaffold_22045__gene_15667	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIAPFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFKGGRSMA
SRS057355_LANL_scaffold_33617	SRS057355_LANL_scaffold_33617__gene_26636	F073671	HELAELHEKERSLEKALELVREKIRELVNYTDKNKRG
SRS057355_LANL_scaffold_40971	SRS057355_LANL_scaffold_40971__gene_35529	F073671	HELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK
SRS057355_LANL_scaffold_44038	SRS057355_LANL_scaffold_44038__gene_40847	F071328	MKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRQCGRHYKEYGDDEHRVFFLDTDINIYFCKHYQLPMYIIQRIEFSNKEYR
SRS057355_LANL_scaffold_8101	SRS057355_LANL_scaffold_8101__gene_3343	F090517	LFLASSCKSKKDTPRLQLSSVELRQTVWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPDREATLTLRKKL