7000000436: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809

Overview

Basic Information

• IMG/M Taxon OID: 7000000436
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052986 | Ga0031251
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81015405
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F080166	Metagenome	115	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N
F103435	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1941758	All Organisms → Viruses → Predicted Viral	2289
SRS015644_WUGC_scaffold_3027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	15425
SRS015644_WUGC_scaffold_35731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	508
SRS015644_WUGC_scaffold_39313	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	918
SRS015644_WUGC_scaffold_47957	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2219
SRS015644_WUGC_scaffold_49583	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	12833

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1918712	C1918712__gene_127987	F061925	KICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI
C1941758	C1941758__gene_135923	F094006	APLTPLSRARVAAMRGALEPADPTGALYESVVSVEAHIGELQAGGIACRSLFAFGGSNLLAVAELGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNFSA
C1949304	C1949304__gene_139277	F103435	MIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFETIFSEVLFNQSEVEFYEFYKAIDRFYNGSEVFIVVGNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE
SRS015644_WUGC_scaffold_3027	SRS015644_WUGC_scaffold_3027__gene_4361	F073671	MNKETEHELAELHEKERGLEKALELVREKIRELVNYTDKNKV
SRS015644_WUGC_scaffold_3027	SRS015644_WUGC_scaffold_3027__gene_4366	F067846	MESIQAQWERKTFNDYDRQCSKEDDYNRAVEMEIESIKEDISNCDSDTLCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS015644_WUGC_scaffold_35731	SRS015644_WUGC_scaffold_35731__gene_54886	F057446	KKTSKLLYLSASFVFIAIYLFDLYQNNFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS015644_WUGC_scaffold_39313	SRS015644_WUGC_scaffold_39313__gene_61045	F058221	MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKKVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETA
SRS015644_WUGC_scaffold_47957	SRS015644_WUGC_scaffold_47957__gene_78540	F098763	LQLVSRTEEELKCTRSMDRRASLRVLSTALHLATKLFEAVVWATIADDPSDEVEGKRGMNAIPTAVDE
SRS015644_WUGC_scaffold_49583	SRS015644_WUGC_scaffold_49583__gene_84405	F080166	KVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPDNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMRS