7000000316: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160502038

Overview

Basic Information

• IMG/M Taxon OID: 7000000316
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052842 | Ga0031044
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160502038
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130484871
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F063778	Metagenome	129	Y
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F095630	Metagenome	105	N
F097526	Metagenome	104	Y
F098763	Metagenome	103	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3472719	Not Available	550
C3479381	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	570
C3543183	Not Available	976
C3564113	Not Available	1399
C3582181	All Organisms → Viruses → Predicted Viral	2855
C3587255	All Organisms → cellular organisms → Bacteria	5704
SRS017511_Baylor_scaffold_17398	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	504
SRS017511_Baylor_scaffold_21318	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	6053
SRS017511_Baylor_scaffold_33426	All Organisms → cellular organisms → Bacteria	20111
SRS017511_Baylor_scaffold_34144	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	970
SRS017511_Baylor_scaffold_45815	Not Available	2712
SRS017511_Baylor_scaffold_47006	Not Available	33062
SRS017511_Baylor_scaffold_56373	All Organisms → cellular organisms → Bacteria	1323
SRS017511_Baylor_scaffold_64753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	697
SRS017511_Baylor_scaffold_66181	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	638
SRS017511_Baylor_scaffold_73363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	7082
SRS017511_Baylor_scaffold_79708	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1323
SRS017511_Baylor_scaffold_80576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	558
SRS017511_Baylor_scaffold_80822	All Organisms → Viruses → Predicted Viral	1526
SRS017511_Baylor_scaffold_82692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1842
SRS017511_Baylor_scaffold_82785	Not Available	695
SRS017511_Baylor_scaffold_87497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1592
SRS017511_Baylor_scaffold_95824	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3142
SRS017511_Baylor_scaffold_96681	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6697

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3472719	C3472719__gene_190457	F022002	ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
C3479381	C3479381__gene_192556	F080165	SLTACNNKTKTISTLDLEKVVINYKELPVPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C3543183	C3543183__gene_213101	F077403	FEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGCWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
C3564113	C3564113__gene_220051	F097526	MQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLNRLTEGVRIAGEMEKAGRNGHPDSEEQTRRAYWDCHFAALQQHARMAGNQITNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRIALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVQEIP
C3582181	C3582181__gene_226849	F043991	MGKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSHQMHFDLDDGTEVSFYKGRNIIYADILFSGGIRTILFKCRQKKNLTRFISRVIELSQGEPSNIHPDFRA
C3587255	C3587255__gene_229202	F051211	MKAKKAIRIFEKIHDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWKDLPIPEHILNLRRQRHERHVILRVFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNSKEFYTEIDKWLADTRAHQSS
SRS017511_Baylor_scaffold_17398	SRS017511_Baylor_scaffold_17398__gene_17590	F030786	MLVVMIVTSSLQLLLKNGSTTKDRNAMGTKKISLADITDGDKAKVVAIKVKYFDDDGADKIFESNNNRILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC
SRS017511_Baylor_scaffold_21318	SRS017511_Baylor_scaffold_21318__gene_21534	F053092	MQSDQGLILCLTHELLVLRALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS017511_Baylor_scaffold_25648	SRS017511_Baylor_scaffold_25648__gene_25961	F022002	TLGVTTPAEARAIIQRQGGKIILEDGIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI
SRS017511_Baylor_scaffold_33426	SRS017511_Baylor_scaffold_33426__gene_34828	F094006	MWGALEPAGPTGALHEPAVSMEAHIGELQTGGIARRGLFTFGGSNVLEVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
SRS017511_Baylor_scaffold_34144	SRS017511_Baylor_scaffold_34144__gene_35643	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGKYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNRK
SRS017511_Baylor_scaffold_45815	SRS017511_Baylor_scaffold_45815__gene_49718	F077403	MSAIYAEERISVHFEVRWRREHNPMDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
SRS017511_Baylor_scaffold_47006	SRS017511_Baylor_scaffold_47006__gene_51139	F103430	MIEQITIKAFIGSDNKIKKLEVDKIISIVNANHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVMNTLSELKKVLDQEAIAYQIENDLQLI
SRS017511_Baylor_scaffold_56373	SRS017511_Baylor_scaffold_56373__gene_62938	F090516	MKSNLSTELFLAFERYFIENDEVISLDKSSEFTDVIAGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETEDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYGDISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLANFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS017511_Baylor_scaffold_64753	SRS017511_Baylor_scaffold_64753__gene_73962	F101358	MTEKYSASLSPRQEHLLTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPATDTTHATTSSQEQQTEIL
SRS017511_Baylor_scaffold_66181	SRS017511_Baylor_scaffold_66181__gene_75897	F057446	NKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIEGFSQDEAEQIIKFLMNNR
SRS017511_Baylor_scaffold_73363	SRS017511_Baylor_scaffold_73363__gene_85822	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMAYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRKNYTLYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS017511_Baylor_scaffold_79708	SRS017511_Baylor_scaffold_79708__gene_94779	F084342	LGGYLAVPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS017511_Baylor_scaffold_80576	SRS017511_Baylor_scaffold_80576__gene_96101	F101359	KRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYKGQGITDSYKETVK
SRS017511_Baylor_scaffold_80822	SRS017511_Baylor_scaffold_80822__gene_96531	F077403	MCTVHAEERISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPHLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM
SRS017511_Baylor_scaffold_82692	SRS017511_Baylor_scaffold_82692__gene_99560	F063778	LMPETISEGAQQKLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIDAYLKNCQTSINDAIGNIEAIPLDPPPED
SRS017511_Baylor_scaffold_82785	SRS017511_Baylor_scaffold_82785__gene_99722	F089056	MVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS017511_Baylor_scaffold_87497	SRS017511_Baylor_scaffold_87497__gene_107903	F092231	MIIFPPQEFITWTNRLMQFPWPIQLNDFPPYAEKLGWKPTSLPDEFSVCPDKDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAEMNDHFVSCVAVGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTGGFTAVLFNFFTPEGRRQFL
SRS017511_Baylor_scaffold_95824	SRS017511_Baylor_scaffold_95824__gene_126110	F098763	MDRRASLRILSPALHLATKLFEAVVRTTISYDPSDEVEGKRGMNAIPTAVDE
SRS017511_Baylor_scaffold_96681	SRS017511_Baylor_scaffold_96681__gene_129190	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
SRS017511_Baylor_scaffold_96681	SRS017511_Baylor_scaffold_96681__gene_129191	F040149	VADEGAEELRWEALIKEQGIPVLFVEVVAWYDGRVSSSEILHSVGIALEREPRLAPVWGHDSEDAIHDFIYDTSVPKGHALTAVRERETVVMQLLNVHRMF