7000000205: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018

Overview

Basic Information

• IMG/M Taxon OID: 7000000205
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052717 | Ga0027920
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29684592
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1368854	All Organisms → cellular organisms → Bacteria	1273
SRS011247_Baylor_scaffold_13865	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1970
SRS011247_Baylor_scaffold_23776	All Organisms → cellular organisms → Bacteria	4519
SRS011247_Baylor_scaffold_24036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1588
SRS011247_Baylor_scaffold_24502	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3870

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1368854	C1368854__gene_57358	F047508	ARTVEAIATDAVLVIEFVGEPVHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS011247_Baylor_scaffold_13865	SRS011247_Baylor_scaffold_13865__gene_12854	F090517	MNRRILSFCGLLLGLLFLASSCKSKKDTPRLQLSSVELRQTAWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL
SRS011247_Baylor_scaffold_23776	SRS011247_Baylor_scaffold_23776__gene_26064	F043235	VQAQIFSLSQALKHGIGDCPDTDLKRISIVDEFSTQLTDALLDRPDGSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVYSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH
SRS011247_Baylor_scaffold_24036	SRS011247_Baylor_scaffold_24036__gene_26646	F084342	VPAQCGAKLFLLGGYLTVPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS011247_Baylor_scaffold_24502	SRS011247_Baylor_scaffold_24502__gene_27485	F094006	MWSALEPAGPTGALYESAVCVEAHIGYLQTGGIACRGLFAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELF