7000000203: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159571453

Overview

Basic Information

• IMG/M Taxon OID: 7000000203
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052715 | Ga0031317
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159571453
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115317748
• Sequencing Scaffolds: 24
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F051211	Metagenome	144	N
F058221	Metagenome	135	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F077404	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F080165	Metagenome	115	N
F085820	Metagenome	111	N
F089056	Metagenome	109	N
F090517	Metagenome	108	N
F092230	Metagenome	107	N
F094006	Metagenome	106	Y
F095633	Metagenome	105	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3034827	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	613
C3038517	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	631
C3056362	Not Available	741
C3066278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	824
C3077516	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	948
C3090129	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1167
C3092655	Not Available	1230
C3095817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1321
C3102221	Not Available	1553
C3104557	Not Available	1664
SRS024441_LANL_scaffold_12708	All Organisms → cellular organisms → Bacteria	9289
SRS024441_LANL_scaffold_30013	All Organisms → cellular organisms → Bacteria → Proteobacteria	729
SRS024441_LANL_scaffold_30155	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2283
SRS024441_LANL_scaffold_32864	All Organisms → cellular organisms → Bacteria	2311
SRS024441_LANL_scaffold_41613	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	884
SRS024441_LANL_scaffold_4386	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1360
SRS024441_LANL_scaffold_48854	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1104
SRS024441_LANL_scaffold_50855	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1854
SRS024441_LANL_scaffold_52058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	5159
SRS024441_LANL_scaffold_53210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1698
SRS024441_LANL_scaffold_53935	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	2847
SRS024441_LANL_scaffold_54814	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	650
SRS024441_LANL_scaffold_56521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	3293
SRS024441_LANL_scaffold_9466	All Organisms → cellular organisms → Bacteria	7066

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3034827	C3034827__gene_143119	F064819	GKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLMRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNEIATFSKEISQEFKKI
C3038517	C3038517__gene_144605	F094006	MWSALEPAGPTGALYESAVCVEAHIGELQTGGIACRGLFAFEGSNVLAVAELGAEAPHAINMYDIAFCKPLSELFAKELEYAFNFGA
C3056362	C3056362__gene_152139	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIITLVAALLFEYAYPWRIIFG
C3066278	C3066278__gene_156463	F092230	LLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVRNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILNAIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
C3077516	C3077516__gene_161684	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVILKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYILNGENITKIHHEISKNVPGGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFPVLAVEFCGLDEDENENTIADYLNFRWISHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQT
C3090129	C3090129__gene_168155	F064819	GKDRIKFSNIVRLNKEEPVFVKMEVRISTETMVSEENLDIERSDLEDLTRNLKDLSECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI
C3092655	C3092655__gene_169520	F085820	MKSSFLTLFAMLFLATTFFSCETDEPAPRPTWGEIVNPIEAFMYPRDLKVYADDDDSRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSRLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
C3095817	C3095817__gene_171281	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKHDPLLAWVHAPYIRNKKTKQEYFIYEDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C3102221	C3102221__gene_175061	F067846	MQRQWEIASFTAYDKAQEQYDTYERAVEMEIEAIKENIANFDDDVICAFREKMLDYDEVISVFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYKNGYILND
C3104557	C3104557__gene_176551	F080164	MVGLTLCAAPQVTLRERASAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIRNFAKYPALPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGMQKGGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPA
C3104557	C3104557__gene_176552	F103432	MKLINSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHLVSTTAAGLRVREPRRVVPMLPRQLHVEMEGKTLIRRHSLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS024441_LANL_scaffold_12708	SRS024441_LANL_scaffold_12708__gene_14931	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLNRLQGNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKIVIPEDAILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIAMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYEANS
SRS024441_LANL_scaffold_30013	SRS024441_LANL_scaffold_30013__gene_35875	F103431	MIDFDALVVGMLFFIQLFLQGIAWRIAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKDAESQKKGFHVCIPED
SRS024441_LANL_scaffold_30155	SRS024441_LANL_scaffold_30155__gene_36072	F094006	MRGALEPADPTGALYEPAVCVEAHIGELQAGSIACRGLFAFGGRDLLAVAELGAEAPHAINMYDIAVCEPLSELFAEELEYAFNFGA
SRS024441_LANL_scaffold_32864	SRS024441_LANL_scaffold_32864__gene_39698	F071328	MKWEFILEGEYIVELVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS024441_LANL_scaffold_41613	SRS024441_LANL_scaffold_41613__gene_50960	F099454	MKASKLLWAVIVALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKSLASPSMKVIQQAK
SRS024441_LANL_scaffold_4386	SRS024441_LANL_scaffold_4386__gene_5140	F043235	VVDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS024441_LANL_scaffold_48854	SRS024441_LANL_scaffold_48854__gene_61232	F058221	MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLAEKFLFPSLKIGSAKLLSNVLLKRTKPSMKKTLIGLGVVVLAPVVIMRIKKILDNFQQKTTTKSLSKLI
SRS024441_LANL_scaffold_50855	SRS024441_LANL_scaffold_50855__gene_64451	F089056	KNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS024441_LANL_scaffold_52058	SRS024441_LANL_scaffold_52058__gene_66537	F072446	MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEQHYHSIPGIAPEETTYRVPVIPRSVEDRTEKEYNERDLDKVAHLVFRATVHGDTINRHKKELEAVARQLHALTLTTIGTSPVLCGVKSIEAVGVAENGRTYDLRREMKLRIRDYSGRVKYRSSGIVTLNCENTESLTAKYVVLLGEIREHELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENY
SRS024441_LANL_scaffold_53210	SRS024441_LANL_scaffold_53210__gene_68985	F095633	MRNYENSTEVGRREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLESVPFGSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRMRCVVDMDRSHKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN
SRS024441_LANL_scaffold_53935	SRS024441_LANL_scaffold_53935__gene_70493	F077404	MTCSRSRNPPNTDGSADHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSMLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW
SRS024441_LANL_scaffold_54814	SRS024441_LANL_scaffold_54814__gene_72452	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEHKNAKRDSYSVYLNFLSDSEVEVSAYDLKDPTHSRDVQVRYYYTITDRIFTLKAQVNYELHPQMDQDTWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
SRS024441_LANL_scaffold_56521	SRS024441_LANL_scaffold_56521__gene_77795	F073671	MEKEQAEHELAELHAQERSLEKALELVREKIRELINYADKNKGQK
SRS024441_LANL_scaffold_9466	SRS024441_LANL_scaffold_9466__gene_11296	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKTRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMTCWDGKSSTTTMAPLRYLRVYRPHSLHERILSQ