7000000140: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 550534656

Overview

Basic Information

• IMG/M Taxon OID: 7000000140
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052636 | Ga0031335
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 550534656
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106511185
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F084342	Metagenome	112	N
F089056	Metagenome	109	N
F090517	Metagenome	108	N
F092230	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2845143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	588
C2863337	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	694
C2865799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	712
C2874493	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	790
C2905334	All Organisms → cellular organisms → Bacteria	1458
C2913872	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2101
C2916506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2459
C2922764	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	4684
C2923066	All Organisms → cellular organisms → Bacteria	4931
SRS044373_WUGC_scaffold_15524	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1477
SRS044373_WUGC_scaffold_34512	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3960
SRS044373_WUGC_scaffold_34546	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	676
SRS044373_WUGC_scaffold_43603	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5038
SRS044373_WUGC_scaffold_47720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4071
SRS044373_WUGC_scaffold_53058	Not Available	1258
SRS044373_WUGC_scaffold_53362	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	4083
SRS044373_WUGC_scaffold_54077	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1450
SRS044373_WUGC_scaffold_60621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	8138
SRS044373_WUGC_scaffold_65345	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4287
SRS044373_WUGC_scaffold_65856	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	6861
SRS044373_WUGC_scaffold_66591	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	7571

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2845143	C2845143__gene_151932	F090517	GLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL
C2863337	C2863337__gene_158634	F064819	MILKDSQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSYLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELEKYK
C2865799	C2865799__gene_159561	F092230	LFIVCIILVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
C2874493	C2874493__gene_162922	F051211	YGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C2905334	C2905334__gene_175417	F061925	MSWEYSINLDSEESVSSVVTDLKICELLSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C2913872	C2913872__gene_179242	F089056	MNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGIPNRRFKDKEEIVFMYYINSCCDNGLLLEECDISFIAITFTNKNEILFRKGIQ
C2916506	C2916506__gene_180548	F042387	IDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVISDSGIQYKKVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
C2922764	C2922764__gene_183779	F058221	MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLAEKFLFPSLKVGSAKLLSNVLLKRTKPSMKKTLIGLGVVVLAPVVIMRIKKILDNFQQKTTTKSLSKLI
C2923066	C2923066__gene_183962	F046432	MWEMTENELSGIISKYQMTEGRYSLEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGIESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS
SRS044373_WUGC_scaffold_15524	SRS044373_WUGC_scaffold_15524__gene_18502	F046432	MWEMTESKLSNIISKYQLPMDDYLVEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVEAEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEMKP
SRS044373_WUGC_scaffold_34512	SRS044373_WUGC_scaffold_34512__gene_43549	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFYHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKRHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFIENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK
SRS044373_WUGC_scaffold_34546	SRS044373_WUGC_scaffold_34546__gene_43580	F084342	HIVVTQCGAKLFLWGGYLALLILRPFFTKALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS044373_WUGC_scaffold_43603	SRS044373_WUGC_scaffold_43603__gene_56297	F043235	VQAQIFSLSQALKHGIGDCPDTDLKRISIVDEFSTQLTDALLDRPDGSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVYSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVRE
SRS044373_WUGC_scaffold_46236	SRS044373_WUGC_scaffold_46236__gene_60205	F068942	EVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVRQPALPAKAQ
SRS044373_WUGC_scaffold_47720	SRS044373_WUGC_scaffold_47720__gene_62369	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGSATGTKKISLADITGGDGSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS044373_WUGC_scaffold_53058	SRS044373_WUGC_scaffold_53058__gene_69998	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL
SRS044373_WUGC_scaffold_53362	SRS044373_WUGC_scaffold_53362__gene_70455	F045567	VRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS044373_WUGC_scaffold_54077	SRS044373_WUGC_scaffold_54077__gene_71609	F046433	MSELSASLDVLDVLNPVTPPDLTLQAQDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHYLEVDNKPVYVDVGNSLGQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGEKIDRLTLP
SRS044373_WUGC_scaffold_60621	SRS044373_WUGC_scaffold_60621__gene_82568	F067846	MQRQWEIASFTAYDKAQEQYDAYERAIEMEIEAIKENIANGDDDVICAFREKMLDYDEVISAIDDDTFNDDEFIKAVALGADYEEIRIKILTAMAEDRLEQLEEDYRKGYILND
SRS044373_WUGC_scaffold_60621	SRS044373_WUGC_scaffold_60621__gene_82574	F073671	MNKETEHELAELHEKERSLEKALELVREKIRELINYTDKNKG
SRS044373_WUGC_scaffold_65345	SRS044373_WUGC_scaffold_65345__gene_92917	F047508	MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS044373_WUGC_scaffold_65856	SRS044373_WUGC_scaffold_65856__gene_94649	F053092	MQSDQGLILCLTHTLLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS044373_WUGC_scaffold_66591	SRS044373_WUGC_scaffold_66591__gene_98111	F046432	MQMSESRLSDVISKYQMPEGRYSVEGEGSFGESEFFWVIKNQSTNQRYLLVNTYSHHGVEAELECYREGGFENLEAIPRRIETLEIASYADDEISKYLFGMFSLFEIKS