7000000132: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416

Overview

Basic Information

• IMG/M Taxon OID: 7000000132
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052616 | Ga0031000
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126268555
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F076191	Metagenome	118	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F092230	Metagenome	107	N
F092231	Metagenome	107	Y
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2870648	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	510
C2944938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	828
C2997937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva	2626
C3001865	All Organisms → cellular organisms → Bacteria	3736
SRS012285_Baylor_scaffold_15743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	9216
SRS012285_Baylor_scaffold_17701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	9340
SRS012285_Baylor_scaffold_18783	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7470
SRS012285_Baylor_scaffold_34492	All Organisms → cellular organisms → Bacteria	2496
SRS012285_Baylor_scaffold_46068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	35689
SRS012285_Baylor_scaffold_48294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	14481
SRS012285_Baylor_scaffold_49177	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11598
SRS012285_Baylor_scaffold_49513	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	8558
SRS012285_Baylor_scaffold_5238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1473
SRS012285_Baylor_scaffold_53252	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	750
SRS012285_Baylor_scaffold_55315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	5095
SRS012285_Baylor_scaffold_55663	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2945
SRS012285_Baylor_scaffold_56558	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1021
SRS012285_Baylor_scaffold_62129	All Organisms → Viruses	43433
SRS012285_Baylor_scaffold_64119	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	16753
SRS012285_Baylor_scaffold_64358	Not Available	1645
SRS012285_Baylor_scaffold_6854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	4670

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2870648	C2870648__gene_161900	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEI
C2944938	C2944938__gene_194185	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKRE
C2997937	C2997937__gene_223425	F092230	MVDKLKTHLLKAFLPLFIVCIIFVAFFRQIDCGSEGGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNQNEDGLSIYLLLSGGEYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSTGEVQNTEEKEALNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILIAIVVIAGYYSYLKPETVYELYCKLRRKEKYSSDVNLVKRIGFLTIILPPCMLFLLIL
C3001865	C3001865__gene_226661	F076191	MKIIAENPAEEVLLRRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVVHLLILAGGNEIPSNHYGFLDNA
SRS012285_Baylor_scaffold_15743	SRS012285_Baylor_scaffold_15743__gene_18369	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRVQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLSKEDKQITSQLKHEFTAYIQYLLKSPFCNNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS012285_Baylor_scaffold_17701	SRS012285_Baylor_scaffold_17701__gene_20733	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVAEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS012285_Baylor_scaffold_18783	SRS012285_Baylor_scaffold_18783__gene_22044	F084342	HIVATQCGAKLFLWGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS012285_Baylor_scaffold_34492	SRS012285_Baylor_scaffold_34492__gene_42367	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPTPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGASSTATMASLKHLRVYRPHSLYERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS012285_Baylor_scaffold_46068	SRS012285_Baylor_scaffold_46068__gene_57678	F067846	MSIIADWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDTEELWKFSEKAFEDDEFVKAIALGNDFEEMRIKILTAMAEDRLGQLEKDYRNGYILND
SRS012285_Baylor_scaffold_48294	SRS012285_Baylor_scaffold_48294__gene_60572	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH
SRS012285_Baylor_scaffold_49177	SRS012285_Baylor_scaffold_49177__gene_61733	F040149	VADEGAKEFRWKGLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETEVVQLLNIHRMF
SRS012285_Baylor_scaffold_49177	SRS012285_Baylor_scaffold_49177__gene_61734	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEAVALPHVARLDEGIPLQRIGSLRDLLMTPDVSQADDL
SRS012285_Baylor_scaffold_49513	SRS012285_Baylor_scaffold_49513__gene_62173	F051213	MNLYKILGALILALSFVFTSCDWVANEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK
SRS012285_Baylor_scaffold_5238	SRS012285_Baylor_scaffold_5238__gene_6084	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKSAKYGPYFVYLSFVSDSIVEVSTFATTDLTVAYDSKDLCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPAAEVTLTLRKKL
SRS012285_Baylor_scaffold_53252	SRS012285_Baylor_scaffold_53252__gene_67393	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGD
SRS012285_Baylor_scaffold_55315	SRS012285_Baylor_scaffold_55315__gene_70631	F073671	MTNNKQAEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR
SRS012285_Baylor_scaffold_55663	SRS012285_Baylor_scaffold_55663__gene_71362	F066860	MTTKKQKLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDYLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS012285_Baylor_scaffold_56558	SRS012285_Baylor_scaffold_56558__gene_72786	F027205	EDSGSSGSSFGRCGAADFIPPGSVKGPRGPPLIERTHVASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRKRAENERD
SRS012285_Baylor_scaffold_62129	SRS012285_Baylor_scaffold_62129__gene_82884	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN
SRS012285_Baylor_scaffold_62129	SRS012285_Baylor_scaffold_62129__gene_82905	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWAVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKKN
SRS012285_Baylor_scaffold_64119	SRS012285_Baylor_scaffold_64119__gene_87488	F105380	MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLVTKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK
SRS012285_Baylor_scaffold_64358	SRS012285_Baylor_scaffold_64358__gene_88173	F097526	MTADNTTAIAPYTQDGYRLLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAGEMEKAGRNGHPDPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVALEPVVTLQAAEQPEITIHNPTTGATL
SRS012285_Baylor_scaffold_6854	SRS012285_Baylor_scaffold_6854__gene_7978	F092231	MIIFPPQEFITWINMLVQFPWPIQLNDFPPYAEQLGWTPTSRPTWFNVLPDNDYAVTNISSDRDGNVRNLFLPMASNETEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGCWSVLFQFFTPEGRRQFL