Sample 7000000042

Basic Information
IMG/M Taxon OID	7000000042 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052507 \| Ga0031308
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000042 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052507 | Ga0031308

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	95607079
Sequencing Scaffolds	21
Novel Protein Genes	22
Associated Families	22

Dataset Contents

Total Genome Size

95607079

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F071328	Metagenome	122	N
F073671	Metagenome	120	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F094006	Metagenome	106	Y
F094007	Metagenome	106	N
F095629	Metagenome	105	N
F095633	Metagenome	105	N
F098763	Metagenome	103	N
F099452	Metagenome	103	N
F103435	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C3788548	Not Available	566	Open in IMG/M
C3804545	Not Available	640	Open in IMG/M
C3811577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	683	Open in IMG/M
C3822331	Not Available	766	Open in IMG/M
C3828163	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	822	Open in IMG/M
C3830793	Not Available	853	Open in IMG/M
C3850420	All Organisms → Viruses → Predicted Viral	1269	Open in IMG/M
C3850874	Not Available	1286	Open in IMG/M
C3860692	Not Available	1962	Open in IMG/M
SRS023835_Baylor_scaffold_27294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1576	Open in IMG/M
SRS023835_Baylor_scaffold_30478	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1317	Open in IMG/M
SRS023835_Baylor_scaffold_46074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1566	Open in IMG/M
SRS023835_Baylor_scaffold_48830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1787	Open in IMG/M
SRS023835_Baylor_scaffold_50313	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2540	Open in IMG/M
SRS023835_Baylor_scaffold_54140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	23827	Open in IMG/M
SRS023835_Baylor_scaffold_54511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9736	Open in IMG/M
SRS023835_Baylor_scaffold_54644	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1751	Open in IMG/M
SRS023835_Baylor_scaffold_55949	Not Available	22173	Open in IMG/M
SRS023835_Baylor_scaffold_58021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae	938	Open in IMG/M
SRS023835_Baylor_scaffold_58772	Not Available	25522	Open in IMG/M
SRS023835_Baylor_scaffold_599	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2138	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3788548	C3788548__gene_136808	F073671	MEKEHAEHELSELHEKERSLEKALEIVREKIRELVNYTDKNKVQK
C3804545	C3804545__gene_143876	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSSIYII
C3811577	C3811577__gene_147071	F094007	MLCRWTDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARSIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
C3822331	C3822331__gene_151865	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSNDEYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAVFDKVLGMVVSQIKHTASSKEGRALGIFMTICILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRTVLSRYLNKM
C3828163	C3828163__gene_154621	F095629	MRELIICLCLLGCFSIANANNVEQSKEVKIVHNDDSIILHKKIYQLEKRIERLEELLKKEGK
C3830793	C3830793__gene_155866	F047508	MLRHRLVEGRIKYPYLRRIWEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQ
C3850420	C3850420__gene_165837	F092229	MSENYRFEHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIED
C3850874	C3850874__gene_166098	F081455	METMKRNLELEQILEEATNTLNRIGDFVICGKKPKTEEKDIPPAEEIGAETVDIIDSAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEYILGNYVDYDSFKKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK
C3851618	C3851618__gene_166529	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILNIRDDIDFSPQGAQLAYLQRSAYLKLEAKRSLEPLQIWYSFDMNTYTNALE
C3860692	C3860692__gene_172159	F099452	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLTDLRKTPWYKKWFTYDQENSRLIDLSKFNFRSLERFEKVEYLKDVEHYDFEGVIKVDSYSLYDTLAEENGLNLFCFAAENILLNHGFFNNTDYQLYDVPDKYIDDQEVCMYMCLLNKDNIDFIDKNTYEDSVLYDIVRDRIFNIIYWSIRDSIEEDTRTRAR
SRS023835_Baylor_scaffold_27294	SRS023835_Baylor_scaffold_27294__gene_28070	F085820	MLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKP
SRS023835_Baylor_scaffold_30478	SRS023835_Baylor_scaffold_30478__gene_31522	F098763	MDRRTSLRILSTVLYLATKLFEAVVWTTISYDPSDEVEGKGGMNAIPTAVDE
SRS023835_Baylor_scaffold_46074	SRS023835_Baylor_scaffold_46074__gene_49527	F046433	MIELPTSPDALSELSPMAPPKLLSQAQDASRNNTVTYVADDGYMGTMTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRSELVFLGMSELHFAATALAKRLRHLLEVDNKPVYVDVGNSLSQCRVKKEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS023835_Baylor_scaffold_48830	SRS023835_Baylor_scaffold_48830__gene_52953	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDRE
SRS023835_Baylor_scaffold_50313	SRS023835_Baylor_scaffold_50313__gene_54890	F094006	MAEELAKAPLTALSRARVAAMRGTLEPAGPTGALYEPAVCVEAHIGELQAGSIACRGLFAFGGRHLLAVAELGAEAPHAIDMYDIALCEPLSELFAEELEYAFNFGA
SRS023835_Baylor_scaffold_54140	SRS023835_Baylor_scaffold_54140__gene_60655	F081510	MKFDLNTIKASTKSALVTTKILGKKYAPYVLLGAGLIGYGYSVYEGIKSGKKLEATKAKYEQMDAVGEEYTRMDVVKDITKDVAIPVAVATASTASIILGFAIQTNRLKAVSSALAIVTEEHARYRLRAKTVLDEETFKKVDAPLETKTVNVDGEDIEVESIIPNEGDLYGMWFKHSHKYASDSPEYNEGVIKEADKVLTEKMMRSGMLTFAEVLDILGFEVPRAALPFGWTDTDGFYIEWDAHEVWNDDKQETEIQFYVRWKTPRNLYATTSFKDFIPKKTRKELN
SRS023835_Baylor_scaffold_54511	SRS023835_Baylor_scaffold_54511__gene_61277	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGE
SRS023835_Baylor_scaffold_54644	SRS023835_Baylor_scaffold_54644__gene_61513	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVWATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKETPSLSSERGCVVERVVR
SRS023835_Baylor_scaffold_55949	SRS023835_Baylor_scaffold_55949__gene_63880	F105376	MKMNKNKKGGDMEPDVSAKEFGALQAKVEYIKDGVDKHTATLERIENIARANVAQAQLKTYITEHEQESEKKYVKRSEIEGVMNFWSLVTSNLAKLFAVALVGLAIYATNNLIQQNKAITELQEEVQTQVRRK
SRS023835_Baylor_scaffold_58021	SRS023835_Baylor_scaffold_58021__gene_68268	F095633	MGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAVHSYEPIPVEINTKRLIATAFLDDEGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN
SRS023835_Baylor_scaffold_58772	SRS023835_Baylor_scaffold_58772__gene_71494	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPVFVDVQCVEYTGGNLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR
SRS023835_Baylor_scaffold_599	SRS023835_Baylor_scaffold_599__gene_620	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIAPFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000042: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences