Sample 3300034815

Basic Information
IMG/M Taxon OID	3300034815 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0142001 \| Gp0401920 \| Ga0373906
Sample Name	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300034815 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0142001 | Gp0401920 | Ga0373906

Sample Name

Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.1

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	441009238
Sequencing Scaffolds	30
Novel Protein Genes	31
Associated Families	30

Dataset Contents

Total Genome Size

441009238

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9

All Organisms → cellular organisms → Bacteria → Acidobacteria

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
Type	Engineered
Taxonomy	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Ecosystem Assignment (GOLD)

Name

Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Type

Engineered

Taxonomy

Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Oak Ridge, Tennessee
Coordinates	Lat. (^o)	36.0103	Long. (^o)	-84.2696	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Oak Ridge, Tennessee

Coordinates

Lat. (^o)

36.0103

Long. (^o)

-84.2696

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000769	Metagenome / Metatranscriptome	898	Y
F001269	Metagenome / Metatranscriptome	734	Y
F005859	Metagenome / Metatranscriptome	388	Y
F006756	Metagenome / Metatranscriptome	365	Y
F012061	Metagenome / Metatranscriptome	284	Y
F013650	Metagenome / Metatranscriptome	269	Y
F016990	Metagenome	243	Y
F018024	Metagenome / Metatranscriptome	237	Y
F018530	Metagenome / Metatranscriptome	234	Y
F024925	Metagenome / Metatranscriptome	204	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0373906_049785	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	944	Open in IMG/M
Ga0373906_068540	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
Ga0373906_072651	Not Available	788	Open in IMG/M
Ga0373906_078315	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	760	Open in IMG/M
Ga0373906_078629	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	758	Open in IMG/M
Ga0373906_087456	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	721	Open in IMG/M
Ga0373906_088410	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
Ga0373906_091636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	705	Open in IMG/M
Ga0373906_093864	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	697	Open in IMG/M
Ga0373906_102890	Not Available	667	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0373906_049785

944

Open in IMG/M

Ga0373906_068540

All Organisms → cellular organisms → Bacteria → Acidobacteria

810

Open in IMG/M

Ga0373906_072651

Not Available

788

Open in IMG/M

Ga0373906_078315

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

760

Open in IMG/M

Ga0373906_078629

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

758

Open in IMG/M

Ga0373906_087456

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

721

Open in IMG/M

Ga0373906_088410

All Organisms → cellular organisms → Bacteria

717

Open in IMG/M

Ga0373906_091636

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058

705

Open in IMG/M

Ga0373906_093864

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

697

Open in IMG/M

Ga0373906_102890

Not Available

667

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0373906_049785	Ga0373906_049785_432_878	F027886	MRKHRRLSIKLGIMLVTVGLVAIQTEAYGQSWKWEFFLSDAECDFFYDPDTVFKSPENMVRVWWKEDFKTKEVLRSRGFTGGEYEKAAYQINVSEINCKKKESCLKFFMICSAEGENILCNIHKRKTDEWVSVRQSHPIGVLYWKVCQ
Ga0373906_068540	Ga0373906_068540_273_809	F006756	QEIVSYARSWRRGQTFGADRFEKELAEHRPAAQRSQAQQRLFDYLRSLCAPDLVEAYLRGLADTDRSLARQIAELLELVRQYGPHAVAGAITKAHAARAFGADYVANILRQQQCPRREQPPLRLRDPRLNDLVTDPLSLLDYDAFILESEKEPDDDARRETRSTESVDDEPPTGPDPF
Ga0373906_072651	Ga0373906_072651_397_672	F028847	MQEERRLFNLRELEKILKSHYKKQNSDLEVSFRDTKFVTYVIHEKGKPWARSLTTEEAFTEITKILFPDEDVRIVRMQFDPPKVELLVEKS
Ga0373906_078315	Ga0373906_078315_602_760	F018024	LKHRFTGQLYELKTAKDGTFILESEETPYRMWFGERDLELFFKMAKKKKLKK
Ga0373906_078629	Ga0373906_078629_3_431	F066874	SSIAAWLVTAGQLAACASEPRAVPLKPPNTELIVGEYERHPPEGQTAIRFRGDGSVRLAKTRALLDTEPPLATGTWKVDGPRLTVTYETGACTDKAADKTGVYTVVISKIGIHFTKVEDSCERRATIDGQTWWRVKVALRGK
Ga0373906_087456	Ga0373906_087456_428_688	F005859	VSDRDLVTRCLAEGKHPWHTRADSLMRTNSPVVGPEQELTGYKVRMDLDPNESHLRPTITVVDGEGLVIGFISHPEQIPGVEIVWG
Ga0373906_088410	Ga0373906_088410_35_655	F001269	MQAPFVKEVESLGLFWAFTLKENQPDLLREAQRFTQESPTGVHTEPGREIRYWHLPEVDWPVADRLVRVVKTVRIEQLNRVTVSEKDGQRIKSKTPVTQESTNFYATNFELGSVSPLFIHQFSRSRWRIDTEVFQTITTDCHLKHPAVHQTTALVMLTMIRFLAYTLSLVFYHRQVRSHARGKCETFHECAKRIGYWFGASAPNTS
Ga0373906_091636	Ga0373906_091636_5_628	F013650	VETLEFLNELHKYSPEASTYNWAELMSTFVAEKAANSYYVGARLLEQVMANNARIADATAPVAFPKKLTDHYMVSIQGFHILNQSNVEGAKQYVKFFLKHPDCIRWYHAVPLHIIPASREVLRSAKYQDHPVIQKRMDVLNFLDSIWGKGVPLYYWDGKEMNPYIGLYHNENLGGWMVAMRNIKKDKSEAIIDEAANKIRSKMKRMG
Ga0373906_093864	Ga0373906_093864_10_696	F024925	RNDPDKIRKLAQNFVLKNIGTIQPDTEVRFVDDEHFTVIFRKIDTLLMSSQRSVIESIFKELGYEIQATAFQNLLSFKLKPLERPVLEPVPRKKLMEALINEMSANSCEEAFEKIKEPIDEMFPEEYPWTIREVGERLIDMYRELDVEVEIEYFEGGFTLKYKTCPYYALVKSGQKTWLCTLRKKVIDYVLSRVSHGKKGKIKIIKSLLKNEHPCEYAVFLTGFLEED
Ga0373906_102890	Ga0373906_102890_327_665	F000769	LCPVCGKTVSVLPANRLTYRPLEVKRLEGRFDAQAKVSSGLDPPPEPVEAGCLQRAWTRFLTRVKRLVNAFGQILPAGLGTGAPLWKELRRCVGSAEAMLRFLAQTCNGSLLG
Ga0373906_119523	Ga0373906_119523_324_503	F097617	MSEVKKCPKCGGEMVQGEFLKNLPKVIVSPKKGRRSFDKTIPTYCKKCGFMEIYREMKE
Ga0373906_124364	Ga0373906_124364_1_207	F103502	MSKETILILDKEFHTQWTLKTILESEKYIVLAVDTIERALQNFQEFEVSGLITEYQIDHANTPEIIREL
Ga0373906_125580	Ga0373906_125580_2_607	F056130	VSEWEIARKSILAYNDALENVAWKPGATRSTRFTAQYGYLQLIPDANTITISATVNGVAQALSNDTYPGMSGSIKYWLSTEYVSYGENYESYILGNSSSLISSSSDSYGRAVINQQPGMITMTLDYRVRAMRTSVIDVGGVQTNYVDIWVIKLSMLVPSAWSYVNEFDLQAKTRSVVTASHRFTGVTDQTSVISVQIGSTPA
Ga0373906_133885	Ga0373906_133885_458_589	F103508	MKLMTKEEKILKEGLEKVSEKKDNMDWISSLAFLNSIGCSPFWA
Ga0373906_134457	Ga0373906_134457_252_500	F061953	MSGPVWKRLRLEGTCDACGDSSAELFAVGTVVDFTFRPDFRYCPACYERYRGRHDELHPQAVAEKQNPPLISRPTDVSDLPE
Ga0373906_137964	Ga0373906_137964_38_574	F016990	MLWEGTGIMAAPVAPADQKEILRTLTLAQHWIKQGDYNRAITYVDFEGMAEIVMAGYWDKMAQKEKNEITTFMKNLIKEKFPIITQRLKLLKFGAITENGNQVVCETLAVLDRTTENKDEKIHVGLVKRGTEWKAVEVYILREGFLAGLNEDTVKPILKRGGTIQEALDAVRLVFQGQ
Ga0373906_141817	Ga0373906_141817_34_501	F050736	MAAPTISHLILTGALIGIIFAVQVFYFYIVDNISSEMLKRELKELSDYVADTIANLYLLLNATNTNPPLEKTLRLPVDIGGSFYTLEIIRDASNNAQTVKGVIQGKSWLNVTSWLPRGLKVDVSRTETIGYSVKTAIVGCLRAASNVYVWIAYKE
Ga0373906_147258	Ga0373906_147258_71_418	F012061	LAFTIKGRFKMRRIPLLASALMLSAPLAHAEMLPAYDSEAICADVAGGSARQELIMRGCLDFQERTRKEIALAWDKLPVPVQVSCTKAAEGSGDYWRLKSCIDKEVRSSSAVSGH
Ga0373906_149027	Ga0373906_149027_116_373	F094833	MEEVWTSFPNWMKPMMKDEKRLNEGLENASEKQDNRDWISCLAFLILTGCSPFWAKVKLTLSLAYYRITAFFIPILKSAILQLIY
Ga0373906_152581	Ga0373906_152581_3_164	F018024	MRIAEGDRLKHKLNGQLYEVKMIRDNTFILESAHTPYRMWFGEDGLELFFETAE
Ga0373906_152654	Ga0373906_152654_27_239	F076225	MKTGRLLKFHRPDGDVHAYFYAEGAAVRAVLYLLAPGHERGPVHEVRGPSSDEVEHQVRAWVDSRYPRSS
Ga0373906_154952	Ga0373906_154952_130_444	F097611	MSGKEQNPNEEKNIIVVSDLSPSVIELLKEFRRTSGAKDIPRVVEDITFSVFELMKLVNTSRDPRIYPQDAVRVMDTVKAVLEKFTRFGKPQQLEEAQKEIKPS
Ga0373906_160800	Ga0373906_160800_19_495	F018530	MSQTTRAFVQMVRLYIRDFPELNRIVKGEESSDRQIAWALLDAIADFNGTPHFTNLRLEDLLQKNQHALMLRMTVVSLIESIGQLQTRNHINYSNGGINVGVNDKTPLLMNWLQYYKSTTEQMKQRVKVAINIEGILGPSNSGVHSEYWAVNSTYAAY
Ga0373906_168520	Ga0373906_168520_4_222	F081467	VNVVLLKWAFAIFGLRLFIASLTFVNAYVAQGAIASGRSSAFGNTMRRLGLNLIVASLLLFLAGIALVVLAI
Ga0373906_173140	Ga0373906_173140_410_520	F056027	MTKAIVVSMCLAASSLSLTPRAQDERGYDYGPVTEVD
Ga0373906_183038	Ga0373906_183038_130_507	F040696	TSDFFTAENGRKSSFGLGTKDTEDVPVTLEDVFEEEADAAIADAHGVGGPVIDVLAVEEIVLEFLLSDQIGGFAVELGEHADGAGVGLLSPFPFAIELKSLDRFVIPLCLHDTSPFSVRIDFPFQ
Ga0373906_183348	Ga0373906_183348_5_454	F046457	LPSIFEQKSQDLRRKAIFFAGIFAFVIGCATHLPDVNSSNTDIPFSKRKVPSLEKAIIIDPKGPSLDPKYYEVMGRADSEVSNVTALVSHCKDAIERLRYEAEIVGGDALIDVSCTSGIFNASANGTVITFKNREEALKVLKDIKAVLK
Ga0373906_185961	Ga0373906_185961_330_503	F099378	KTRESKKYTFSVRKIRPGYLELVIDKPLPKGEYIFVVMGGFEINLDGSASLFAFEIV
Ga0373906_187028	Ga0373906_187028_1_474	F040161	LLDLEASPQAVPWAASIGGEVVAQGPARAGFQWVNGAPRAGKQALLAVPLGDRETDEVRLVFQGPGPRLTIAEAFLYGPGEEERPTAGAGPARDAFESARGGRWDEAVRLYAQAVRLEPERASHHAAWARSRWRAAHRRWLDVESLDDGGPELVDVR
Ga0373906_187213	Ga0373906_187213_2_409	F081509	MGLAEDERWFGGLKDDQAVIVSNVFEGSPIAVASGIGLLEDRENGIVIEGPSHHLKFLYPFLLRLRNDSIDSNEFGIWVGVTWAKTKKWLNLFYLFGDSLRDRMELLEHKFRRDIAFSCGLRLSEKARMIVRVGTR
Ga0373906_190028	Ga0373906_190028_1_159	F094825	MKTTTCPECGWTVKSPWGENDVIDHIMLHVKNHHPEMLKHSKEDMKKMIKDA

Showing 1 to 31 of 31 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300034815: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences