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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300034003 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0136120 | Gp0356238 | Ga0334922 |
| Sample Name | Biocrust microbial communities from Mojave Desert, California, United States - 18HMC |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 213041513 |
| Sequencing Scaffolds | 33 |
| Novel Protein Genes | 34 |
| Associated Families | 29 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 4 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 2 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 7 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | desert biome → desert → soil biocrust |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.3778 | Long. (o) | -117.6098 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000584 | Metagenome / Metatranscriptome | 1007 | Y |
| F001042 | Metagenome / Metatranscriptome | 794 | Y |
| F001926 | Metagenome / Metatranscriptome | 616 | Y |
| F003495 | Metagenome / Metatranscriptome | 483 | Y |
| F005545 | Metagenome / Metatranscriptome | 397 | Y |
| F006886 | Metagenome / Metatranscriptome | 362 | Y |
| F007252 | Metagenome / Metatranscriptome | 354 | Y |
| F007987 | Metagenome / Metatranscriptome | 341 | Y |
| F012744 | Metagenome / Metatranscriptome | 277 | Y |
| F013568 | Metagenome | 270 | Y |
| F014784 | Metagenome / Metatranscriptome | 260 | Y |
| F017778 | Metagenome / Metatranscriptome | 238 | Y |
| F018295 | Metagenome / Metatranscriptome | 236 | Y |
| F024195 | Metagenome / Metatranscriptome | 207 | Y |
| F027308 | Metagenome / Metatranscriptome | 195 | Y |
| F030383 | Metagenome / Metatranscriptome | 185 | N |
| F038520 | Metagenome / Metatranscriptome | 165 | Y |
| F042091 | Metagenome / Metatranscriptome | 159 | N |
| F042710 | Metagenome | 157 | N |
| F043599 | Metagenome / Metatranscriptome | 156 | Y |
| F044877 | Metagenome / Metatranscriptome | 153 | N |
| F059667 | Metagenome / Metatranscriptome | 133 | Y |
| F062389 | Metagenome / Metatranscriptome | 130 | N |
| F066650 | Metagenome / Metatranscriptome | 126 | Y |
| F069716 | Metagenome | 123 | Y |
| F085519 | Metagenome | 111 | Y |
| F091830 | Metagenome / Metatranscriptome | 107 | Y |
| F096282 | Metagenome / Metatranscriptome | 105 | Y |
| F102407 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0334922_000001 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 300626 | Open in IMG/M |
| Ga0334922_000005 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 145659 | Open in IMG/M |
| Ga0334922_000020 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 81001 | Open in IMG/M |
| Ga0334922_000022 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 77319 | Open in IMG/M |
| Ga0334922_002649 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1673 | Open in IMG/M |
| Ga0334922_002990 | Not Available | 1599 | Open in IMG/M |
| Ga0334922_003814 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae | 1468 | Open in IMG/M |
| Ga0334922_003904 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1458 | Open in IMG/M |
| Ga0334922_004326 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1404 | Open in IMG/M |
| Ga0334922_004852 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1348 | Open in IMG/M |
| Ga0334922_005306 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1308 | Open in IMG/M |
| Ga0334922_010476 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1031 | Open in IMG/M |
| Ga0334922_010996 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra | 1014 | Open in IMG/M |
| Ga0334922_013779 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 937 | Open in IMG/M |
| Ga0334922_017253 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | 869 | Open in IMG/M |
| Ga0334922_017981 | Not Available | 856 | Open in IMG/M |
| Ga0334922_019205 | Not Available | 836 | Open in IMG/M |
| Ga0334922_022412 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema | 793 | Open in IMG/M |
| Ga0334922_023179 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 783 | Open in IMG/M |
| Ga0334922_023772 | Not Available | 777 | Open in IMG/M |
| Ga0334922_023867 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 776 | Open in IMG/M |
| Ga0334922_024356 | Not Available | 770 | Open in IMG/M |
| Ga0334922_025033 | Not Available | 763 | Open in IMG/M |
| Ga0334922_026635 | Not Available | 747 | Open in IMG/M |
| Ga0334922_028922 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 725 | Open in IMG/M |
| Ga0334922_033847 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 686 | Open in IMG/M |
| Ga0334922_034228 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 683 | Open in IMG/M |
| Ga0334922_037222 | All Organisms → cellular organisms → Bacteria | 663 | Open in IMG/M |
| Ga0334922_041548 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 638 | Open in IMG/M |
| Ga0334922_047386 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | 607 | Open in IMG/M |
| Ga0334922_050500 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 594 | Open in IMG/M |
| Ga0334922_057895 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium | 564 | Open in IMG/M |
| Ga0334922_058458 | Not Available | 562 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0334922_000001 | Ga0334922_000001_177651_177854 | F043599 | MTTYISDQRARRLAELDARERQAWETYSESVRGLEGRDYEETEDQSWDRLQMKLRELDGERQLVAGS |
| Ga0334922_000005 | Ga0334922_000005_105717_105947 | F091830 | MDTILIAALAGGSWIMVGFMAFLFVGVVVGYYTQAGSGITARPYGKIYSGAPGAIGPSDASGKDHREVVSWSRGTR |
| Ga0334922_000020 | Ga0334922_000020_65249_65533 | F000584 | MARKTHHKHSSTKGYRRLLDALAAIEGVHRVATGRVTPRMGSGRPVAAISKVRRVDSGLSITINTDGAMIDAYVITDRPEDVEAAMAERGWTAG |
| Ga0334922_000022 | Ga0334922_000022_41533_41907 | F030383 | MRRPIVCRIRLDGMPVRSETILTEAGPNALVLSTTIRDRGIWLDSTYLGHGSADTQITHLLVAPGRCGETEARTVPHDDVPVIHVRRLCLYDHFQRLQDFLEGLGHVGQIHGLDHAIEAVEQLS |
| Ga0334922_002649 | Ga0334922_002649_501_665 | F003495 | MESSPMMACMKENNEKKMENCDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR |
| Ga0334922_002990 | Ga0334922_002990_2_184 | F062389 | SISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASVAEVNNG |
| Ga0334922_003814 | Ga0334922_003814_662_1102 | F007252 | MNNKVQPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPSAPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFAAFDIFDLPPAQKARSSSR |
| Ga0334922_003904 | Ga0334922_003904_1109_1456 | F001042 | MSTSNLIGGNFASDVPKDFEADTDDKIVIDKLLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINL |
| Ga0334922_004326 | Ga0334922_004326_1205_1402 | F001926 | NKPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERERIKIEKLLTLGYTTSGDP |
| Ga0334922_004852 | Ga0334922_004852_687_1334 | F014784 | VEEGLRHFNIEWHIVPAAEAVALDDNYLARLYPRAPRDFSKTREHGHNYREQLLGGHARHQGRIVGVETTPKPRYLPGNRQFYGTTYGHDAAADPLAPYMGRAGMMNGTRYAHNYLSLRTFLNVVNEDWRARRLLPSGYRVTVCPPAVFNLVGTIFHPEWSETETLELGFYRDEQGNATCFAVGSNAPGDFSYINEVEGEAEWSLMGFRLALVPE |
| Ga0334922_005306 | Ga0334922_005306_459_923 | F006886 | MYSEFDSGFDYLNSETPQQFEQQNQTKTPEVTNIERFWTLTGNWGEFGSYFGAGLSVSLVVRAIPALIPAAVILIPAVSLGLAIFSFSSEGAASLRSQLILIAVGTALIAGNWDAWQAWIIANSQMLIFSFALIVITVGFSAAQVWSKLSNVSK |
| Ga0334922_005306 | Ga0334922_005306_910_1308 | F069716 | MLANKNQAVVSGLLGLGIASLAVATALPFNDRIEYRIGNRIESQPAWLVPPKAEFRAISRGYGGIKILLSLLATGGMVTVMLIARKEGEQEPIRQRIKAYKKQAYEFDFAAESAFSMAQTQQRYKKLLEAREV |
| Ga0334922_010476 | Ga0334922_010476_43_396 | F001042 | MTTSHLIGGNFASNVPKDFEADTDGKIVIDKILVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSISNKNDTACREFTEKSSLLLESYQEDVPKSLGKAESCLGEAIDLINGT |
| Ga0334922_010996 | Ga0334922_010996_840_968 | F085519 | MIKRRLMIVPPALSNGGHAGQLVKTSKGSLRLLLETADMRVS |
| Ga0334922_013779 | Ga0334922_013779_72_863 | F012744 | MSENRSTLQEPSKRSQFLTHASLFKNHATKVYVFDRIRHSTALEILSRASAACRFESPDTVVSEPQWREYFGLPVMSLTAAANYYGLKISDLETHISKKDTYTGGLFESGMLVLRGAALESARQMGHTPERLQGCVLLPPRAVLRLCLFLRGVSTVAATVNALWEYVLAEKLNESTLADWHYTCNQHIEIECSRIEEQRLLECLAEAKERKLYPYIQHFGHQTCFEAWARLFTYEGEFPPPRGSFYVERQEWFDRVSHISLWR |
| Ga0334922_017253 | Ga0334922_017253_342_572 | F042710 | MAEKSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEALLEVHGEAKPLKPQFVPKPNQP |
| Ga0334922_017981 | Ga0334922_017981_394_549 | F059667 | MKGKTKCKAKNLFKVALLTEKPPQMNSTISCPIQGIALTRLVITVAPHKLI |
| Ga0334922_019205 | Ga0334922_019205_65_385 | F044877 | MCVSEEMVTLDRKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPIKLGKSNG |
| Ga0334922_022412 | Ga0334922_022412_375_665 | F038520 | MKQKGSKHGGSRTGAGRPHKWQGGETKLVRIPVAYVDKILRIVAYMDANEGQLPQGIAFATEGEDFSFPGYDASGELPYPNYDLYNKRYMNSTWNS |
| Ga0334922_023179 | Ga0334922_023179_465_758 | F062389 | MLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAQYSISNKNDTACREFTEKSSLLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNG |
| Ga0334922_023772 | Ga0334922_023772_276_620 | F042091 | MSHTDGCPVGRSQLFTFKAKETITVDRPTLEHIFALLNGCSANFKYLCDNDIFVFATKNYLASLDNPESGKALNLLGVWTDTWPDASEELADGLDEAVQSIKFILAATAGGRND |
| Ga0334922_023867 | Ga0334922_023867_1_342 | F001042 | PKNFEADTDDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSITNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLEEAIDLINLIVSASEAEGDNG |
| Ga0334922_024356 | Ga0334922_024356_497_700 | F062389 | MHLADFSISNKNDTACREFTEKSSLLLESYQEDVPKSLGKAESCLGEAIDLINLIVSANEAEVNNNG |
| Ga0334922_025033 | Ga0334922_025033_108_335 | F096282 | MKFEHRGETVELLLVGIHHPNHPDKIWEEARAIWKVVINGKENSGTRSGNRDEVVADIKRGIDWLIDDPDMKNIF |
| Ga0334922_026635 | Ga0334922_026635_485_631 | F024195 | MGDKAFNVIGSIVTVALVTTVVSKPTSAQVIRAMGDAFAGSIRAALGK |
| Ga0334922_028922 | Ga0334922_028922_201_587 | F001042 | MTTSHLIGGNFASDVPKDFEADTDDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAQDSISNKNDAARRDFTEKSSLLLESYREDVPKLLGKAENCLGEAIDLINLIVSASVAEANNG |
| Ga0334922_033847 | Ga0334922_033847_3_152 | F013568 | GAPHDKKLDRTERISYVAEKMNLTRKQAKRRIRNYEAWQRNIKKGLVSR |
| Ga0334922_034228 | Ga0334922_034228_391_681 | F018295 | LQRFLEFILTQAVIIKLMTTSHLIGGNFVSNFPKDSEAEADDKIVIDKLLINKLTELLINSIYSVHISRRSEIFLTSLDMHLAENSISNKNNKASHE |
| Ga0334922_037222 | Ga0334922_037222_51_293 | F005545 | MEERNEQAVDDRGTSEAGGREILKRLRDEGFESDDEKLAVALGRPVEEVQGWMAGSPDEPVDDDIVMKARGIAKERGIEI |
| Ga0334922_041548 | Ga0334922_041548_500_610 | F027308 | MAPRRPVLYEDQWALALVTAIVLLGSIGLVLWAVFG |
| Ga0334922_047386 | Ga0334922_047386_99_551 | F017778 | MAKGKTKGKRGGIRPGAGNPYKWKHRETKPVRLPIALIPKILEIAQLIDGQEYIDRVQYEFDDEEGKPKSYNGYYAAQLSYLRTGNDALAEELNKLRIENEALKAQLRELNNGVLPEPNPDFSSLLLVPKPKPLAKQNRRKKRKDIIFVE |
| Ga0334922_050500 | Ga0334922_050500_27_593 | F102407 | RTRPYSFGGFARANVYDSKLNLDLNQNRQKICEPEGLRSKIFEAWVQRDELALFEFQQKRIAAVEADVTLDLKPSASKVRLKKDVYLGSVTASPIDIENIPSVTTSPTVETPIEPTPEAQPEPLGRMGWVSRWGEWIRASFLAATDGAQYRMLIQELGEWSEVLVFPHQIRWDTDSKIPPHRYKVYPA |
| Ga0334922_057895 | Ga0334922_057895_275_544 | F007987 | MRKQASTRRVEAASGDAFSSTTAIAALLFLAAKFPHRQFNSAELCVVSGIGRTAMSQIKNAADTPFSLGKCTLQRLDTWLAKHPGFKQG |
| Ga0334922_058458 | Ga0334922_058458_68_220 | F066650 | MVKKGQEQVSRMDSPRQGEERDPKEGKIKHKGGSESQRRASPPSEGSSKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |