Metagenome / Metatranscriptome Family F066650

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066650
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	53 residues
Representative Sequence	MVKKGQEQVSRADSPRQGEKRNPKEPKIKHKGGSRSQSRARPQGEGSSSKG
Number of Associated Samples	63
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	56.10 %
% of genes near scaffold ends (potentially truncated)	44.44 %
% of genes from short scaffolds (< 2000 bps)	92.86 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.349 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere (20.635 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.095 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.80% β-sheet: 0.00% Coil/Unstructured: 96.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00698	Acyl_transf_1	3.17
PF07883	Cupin_2	3.17
PF00196	GerE	1.59
PF00106	adh_short	0.79
PF12535	Nudix_N	0.79
PF00188	CAP	0.79
PF02353	CMAS	0.79
PF07690	MFS_1	0.79
PF05635	23S_rRNA_IVP	0.79
PF00456	Transketolase_N	0.79
PF04055	Radical_SAM	0.79
PF01558	POR	0.79
PF13412	HTH_24	0.79
PF00107	ADH_zinc_N	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.79
COG1014	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit	Energy production and conversion [C]	0.79
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.79
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.79
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.79
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.79
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
All Organisms	root	All Organisms	43.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
cellular organisms	root	All Organisms → cellular organisms	42.06 %
Viruses	superkingdom	All Organisms → Viruses	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.06 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.17 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	1.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.79 %
Herpetosiphonales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales	0.79 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.79 %
Herpetosiphonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae	0.79 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %
unclassified Herpetosiphonaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → unclassified Herpetosiphonaceae	0.79 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.79 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.35 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.59 %
Herpetosiphonaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → unclassified Herpetosiphonaceae → Herpetosiphonaceae bacterium	0.79 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.79 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000305\|bgg_mtDRAFT_1034657	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300000750\|JGI12272J11983_1020153	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300000750\|JGI12272J11983_1108565	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300000827\|JGI12396J12026_1047417	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300000827\|JGI12396J12026_1050447	Not Available	705	Open in IMG/M
3300000827\|JGI12396J12026_1068497	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300000829\|JGI12397J12024_1133560	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300000831\|JGI12271J12027_1205230	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300000833\|JGI12273J12029_10232261	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300003267\|soilL1_10177287	Not Available	1226	Open in IMG/M
3300004463\|Ga0063356_101372644	Not Available	1038	Open in IMG/M
3300005179\|Ga0066684_10640683	Not Available	714	Open in IMG/M
3300005532\|Ga0070739_10150208	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300005598\|Ga0066706_10464020	Not Available	1009	Open in IMG/M
3300006791\|Ga0066653_10403819	Not Available	699	Open in IMG/M
3300006865\|Ga0073934_10097173	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300007004\|Ga0079218_11951425	Not Available	667	Open in IMG/M
3300007004\|Ga0079218_12294681	Not Available	631	Open in IMG/M
3300007790\|Ga0105679_10262099	Not Available	1089	Open in IMG/M
3300009012\|Ga0066710_102872587	Not Available	677	Open in IMG/M
3300009012\|Ga0066710_103801369	Not Available	566	Open in IMG/M
3300009095\|Ga0079224_102325147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	763	Open in IMG/M
3300009137\|Ga0066709_103754643	Not Available	551	Open in IMG/M
3300009789\|Ga0126307_10659548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	844	Open in IMG/M
3300009840\|Ga0126313_11565011	Not Available	548	Open in IMG/M
3300009873\|Ga0131077_10570603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1031	Open in IMG/M
3300010038\|Ga0126315_10212016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1170	Open in IMG/M
3300010039\|Ga0126309_10538867	Not Available	725	Open in IMG/M
3300010039\|Ga0126309_10983420	Not Available	565	Open in IMG/M
3300010044\|Ga0126310_10251831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1192	Open in IMG/M
3300010044\|Ga0126310_10259438	Not Available	1176	Open in IMG/M
3300010044\|Ga0126310_10993338	Not Available	660	Open in IMG/M
3300010045\|Ga0126311_11261252	Not Available	613	Open in IMG/M
3300010045\|Ga0126311_11524332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	561	Open in IMG/M
3300010146\|Ga0126320_1476014	Not Available	500	Open in IMG/M
3300010166\|Ga0126306_10346950	Not Available	1152	Open in IMG/M
3300011332\|Ga0126317_10558570	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300011332\|Ga0126317_10798811	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300011333\|Ga0127502_10705567	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300012208\|Ga0137376_11033165	Not Available	703	Open in IMG/M
3300012212\|Ga0150985_101382827	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300012212\|Ga0150985_102085240	Not Available	660	Open in IMG/M
3300012212\|Ga0150985_102784308	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300012212\|Ga0150985_102842525	Not Available	677	Open in IMG/M
3300012212\|Ga0150985_103097935	Not Available	580	Open in IMG/M
3300012212\|Ga0150985_104253040	Not Available	501	Open in IMG/M
3300012212\|Ga0150985_104759183	Not Available	524	Open in IMG/M
3300012212\|Ga0150985_106851424	Not Available	558	Open in IMG/M
3300012212\|Ga0150985_107733349	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012212\|Ga0150985_109404679	Not Available	555	Open in IMG/M
3300012212\|Ga0150985_110953270	Not Available	744	Open in IMG/M
3300012212\|Ga0150985_110987604	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300012212\|Ga0150985_111237706	Not Available	636	Open in IMG/M
3300012212\|Ga0150985_111903644	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300012212\|Ga0150985_112277137	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300012212\|Ga0150985_112342399	Not Available	540	Open in IMG/M
3300012212\|Ga0150985_114161729	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012212\|Ga0150985_114916025	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300012212\|Ga0150985_117029220	All Organisms → Viruses → Predicted Viral	1279	Open in IMG/M
3300012212\|Ga0150985_117044470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → unclassified Herpetosiphonaceae → Herpetosiphonaceae bacterium	1126	Open in IMG/M
3300012212\|Ga0150985_118038239	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300012212\|Ga0150985_118479690	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300012212\|Ga0150985_118579510	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300012212\|Ga0150985_119301949	Not Available	640	Open in IMG/M
3300012212\|Ga0150985_119808556	Not Available	709	Open in IMG/M
3300012212\|Ga0150985_121093920	Not Available	763	Open in IMG/M
3300012469\|Ga0150984_101988653	Not Available	646	Open in IMG/M
3300012469\|Ga0150984_103581906	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300012469\|Ga0150984_104641154	Not Available	543	Open in IMG/M
3300012469\|Ga0150984_105573131	Not Available	673	Open in IMG/M
3300012469\|Ga0150984_106656249	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300012469\|Ga0150984_107920428	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300012469\|Ga0150984_110361911	Not Available	669	Open in IMG/M
3300012469\|Ga0150984_112052523	Not Available	600	Open in IMG/M
3300012469\|Ga0150984_113728595	Not Available	550	Open in IMG/M
3300012469\|Ga0150984_116174813	Not Available	534	Open in IMG/M
3300012469\|Ga0150984_121357798	Not Available	697	Open in IMG/M
3300012986\|Ga0164304_10744837	Not Available	750	Open in IMG/M
3300017789\|Ga0136617_11329028	Not Available	538	Open in IMG/M
3300018465\|Ga0190269_11923875	Not Available	511	Open in IMG/M
3300018468\|Ga0066662_12829728	Not Available	515	Open in IMG/M
3300018482\|Ga0066669_12267249	Not Available	517	Open in IMG/M
3300018910\|Ga0193598_1000029	All Organisms → cellular organisms → Bacteria	176059	Open in IMG/M
3300020069\|Ga0197907_10789804	Not Available	620	Open in IMG/M
3300020069\|Ga0197907_10791147	Not Available	627	Open in IMG/M
3300020070\|Ga0206356_10276988	Not Available	525	Open in IMG/M
3300020080\|Ga0206350_11229701	Not Available	515	Open in IMG/M
3300022467\|Ga0224712_10631794	Not Available	524	Open in IMG/M
3300025310\|Ga0209172_10252143	Not Available	900	Open in IMG/M
3300026704\|Ga0208581_105037	Not Available	589	Open in IMG/M
3300028778\|Ga0307288_10181668	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300029644\|Ga0206083_100417	Not Available	967	Open in IMG/M
3300030784\|Ga0102758_11073929	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300030829\|Ga0308203_1065356	Not Available	576	Open in IMG/M
3300030830\|Ga0308205_1017372	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300030902\|Ga0308202_1029891	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300030902\|Ga0308202_1153943	Not Available	513	Open in IMG/M
3300030903\|Ga0308206_1049492	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300030903\|Ga0308206_1194654	Not Available	511	Open in IMG/M
3300030905\|Ga0308200_1175999	Not Available	509	Open in IMG/M
3300031055\|Ga0102751_1362440	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300031058\|Ga0308189_10133807	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300031058\|Ga0308189_10246118	Not Available	673	Open in IMG/M
3300031058\|Ga0308189_10251052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	668	Open in IMG/M
3300031091\|Ga0308201_10044005	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300031091\|Ga0308201_10050472	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300031091\|Ga0308201_10304142	Not Available	569	Open in IMG/M
3300031091\|Ga0308201_10350475	Not Available	541	Open in IMG/M
3300031091\|Ga0308201_10354209	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031092\|Ga0308204_10066185	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300031092\|Ga0308204_10082199	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031092\|Ga0308204_10094488	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031092\|Ga0308204_10139679	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300031092\|Ga0308204_10190350	Not Available	634	Open in IMG/M
3300031092\|Ga0308204_10216903	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300032126\|Ga0307415_102393508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	519	Open in IMG/M
3300033988\|Ga0334909_018938	Not Available	882	Open in IMG/M
3300034003\|Ga0334922_058458	Not Available	562	Open in IMG/M
3300034009\|Ga0334944_028670	All Organisms → Viruses → Predicted Viral	1060	Open in IMG/M
3300034172\|Ga0334913_009623	Not Available	2351	Open in IMG/M
3300034172\|Ga0334913_011154	Not Available	2136	Open in IMG/M
3300034402\|Ga0334960_003614	Not Available	2289	Open in IMG/M
3300034760\|Ga0334948_000015	All Organisms → cellular organisms → Bacteria	245990	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.87%
Host-Associated	Host-Associated	33.33%
Engineered	Engineered	0.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.32%
Plants	Host-Associated → Plants	32.54%
Aquatic	Environmental → Aquatic	5.56%
Human	Host-Associated → Human	0.79%
Wastewater	Engineered → Wastewater	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.11%
Freshwater	Environmental → Aquatic → Freshwater	3.97%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.59%
Digestive System	Host-Associated → Human → Digestive System	0.79%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	20.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.32%
Sand	Environmental → Terrestrial → Soil → Sand	7.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.17%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.59%
Ice	Environmental → Aquatic → Freshwater → Ice	0.79%
Loam	Environmental → Terrestrial → Soil → Loam	0.79%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.79%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	20.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.32%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	7.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.35%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	5.56%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.38%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.59%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.79%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	20.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	10.32%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.73%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	7.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.97%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	3.97%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.38%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.59%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.79%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.79%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000305	Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly	Host-Associated	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000827	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate B) 0B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000829	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate A) 0A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000831	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate B) D5B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000833	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate C) 0C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300026704	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 (SPAdes)	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300029644	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030784	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 6A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031055	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033988	Soil microbial communities from Mojave Desert, California, United States - 5NOC	Environmental	Open in IMG/M
3300034003	Biocrust microbial communities from Mojave Desert, California, United States - 18HMC	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034402	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS	Environmental	Open in IMG/M
3300034760	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 44SMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
bgg_mtDRAFT_10346571	3300000305	Host-Associated	MVKKGQEQVSRADSPRQGEKRDPKEPKIKHQGGSRSQSRARPQGEGSSSKG*
JGI12272J11983_10201531	3300000750	Soil	MVKKGQEQVSRMDSPRQGEKVNPEDGKIKHQGGSENQSRAHPKSEGSKG*
JGI12272J11983_11085651	3300000750	Soil	MVKKGQEQVSKMDSPRQGEKVNPEEGKVKHQGGSENQSRAHPKSEGSSSKG*
JGI12396J12026_10474171	3300000827	Soil	MVKKGQEQVSRMDSPRQGEKVSPEEGKIKHKGGSENQTRSRPQSEGSSSKG*
JGI12396J12026_10504471	3300000827	Soil	PPEGTMVKKGQEQVSRMDSPRQGEKVNPEDGKIKHQGGSENQSRAHPKSEGSKG*
JGI12396J12026_10684971	3300000827	Soil	VKKGQEQVSRMDSPRQGEKVNPEDGKIKHKGGSENQTRSRPQSEGSSSKG*
JGI12397J12024_11335601	3300000829	Soil	SRMDSPRQGEKVNPEEGKIKHKGGSENQTRSRPQSEGSSSKG*
JGI12271J12027_12052301	3300000831	Soil	MVKKGQEQVSRMDSPRQGEKVNKDDGKIKHQGGSENQSRAHPKSEGSSSKG*
JGI12273J12029_102322611	3300000833	Soil	QEQVSRMDSPRQGEKVNPEEGKIKHKGGSENQTRSRPQSEGSSSKG*
soilL1_101772872	3300003267	Sugarcane Root And Bulk Soil	MAKKGQEQVSSADSPRQGEPRNPKEPKIKHKGKGSQNQTQARPQGEGSSHG*
Ga0063356_1013726443	3300004463	Arabidopsis Thaliana Rhizosphere	MAKKGEEQVSSADSPRQGEPRNPKEPKIKHKGNGSQNQTKARPPGEGSSPG*
Ga0066684_106406832	3300005179	Soil	MVKKGQEQVSRMDSPRQGQPRNPDEPKIQHRGGSGSQRRGRGQSEGSGHRS*
Ga0070739_101502082	3300005532	Surface Soil	MVKKGQEQVSEADSPRQGEDRNPNDPKIKHTGHGSRSQTRARPPSEGSESKG*
Ga0066706_104640201	3300005598	Soil	MVKKGQEQVSRMDSPRQGQPRNPDEPKIQHRGGSGSQRRGRGQSEGSSHRS*
Ga0066653_104038192	3300006791	Soil	MVKKGQLQVSKMDSPRQGEDRNPDEPKVKHQGKSERQRRGRGQSEGSSSKG*
Ga0073934_100971736	3300006865	Hot Spring Sediment	MVKKGQEQISAMDSPRQGDRRNPKDPKIKHTGPGSRSGTRARPQPEGARSGG*
Ga0079218_119514252	3300007004	Agricultural Soil	MVKKGQEQVSSMDSPRQGEPRNPNDPKIKHKGEGSKSQTRARPQSEGSSKG*
Ga0079218_122946812	3300007004	Agricultural Soil	MVKKGQEQVSKADSPRQGEKRNPKEPKVKHQGGSQSQSRARPQGEGSSSKG*
Ga0105679_102620993	3300007790	Soil	VVKKGQEQVSRMDSPKQGEDRDPKEGKIKHKGGSESQRRASPPSEGSSKG*
Ga0066710_1028725871	3300009012	Grasslands Soil	MVKKGQEQVSSMDSPRQGQPRNPNEPKVKHKGEGSRSQTRARPQSEGSSKG
Ga0066710_1038013691	3300009012	Grasslands Soil	MSKKGQEQVSRMDSPRQGEPRDPKEPKIHHRGGSQSQTRGRGQSEGSSSGR
Ga0079224_1023251471	3300009095	Agricultural Soil	MVKKGQEQVSRADSPRQGEKRNPKEPKIKHKGGSRSQSRARPQGEGSSSKG*
Ga0066709_1037546431	3300009137	Grasslands Soil	MVKKGQEQVSEMDSPRQGEPVNPKEPKIKHTGRGSRSGTRARPRPEGSHSQG*
Ga0126307_106595482	3300009789	Serpentine Soil	MVKKGQEQVSAMDSPRQGEKRDPKEEKIKHKGEGSKSQTRARPVAEGSGSDG*
Ga0126313_115650112	3300009840	Serpentine Soil	MVKKGQEQVSRADSPRQGEKRDPNEPKIKHQGGSESQTRARPQGEGSSSKG*
Ga0131077_105706032	3300009873	Wastewater	MVKKGQEPVSKADSPRQGEPRDPDEPKIKHQGGSESQSRARPQGEGSSSKG*
Ga0126315_102120162	3300010038	Serpentine Soil	VVKKGQEQVSKADSPRQGERVNPEEAKIKHKGGSQNQSRARGQGEGSSSKG*
Ga0126309_105388672	3300010039	Serpentine Soil	MVKKGQEQVSRMDSPRQGEKRNPDEPKIKHKGDGSKSQQRGQRNEGDSKG*
Ga0126309_109834202	3300010039	Serpentine Soil	MVKKGQEQVSRMDSPRQGEKRNPDEPKIKHRGGSRSQTNARPPSEGSSSKG*
Ga0126310_102518311	3300010044	Serpentine Soil	VVKKGQEQVSKADSPRQGERVNPEEGKIKHKGGSQNQSRARGQGE
Ga0126310_102594381	3300010044	Serpentine Soil	MVKKGQEQVSSMDSPRQGQDRDPKEPKVKHKGEGSRSQTRARPQSEGSGSKG*
Ga0126310_109933381	3300010044	Serpentine Soil	MKKGQEQVSAADSPRQGEKRNPKDPKIKHKGEGSKSQTRARPQSEGSGSHGD*
Ga0126311_112612522	3300010045	Serpentine Soil	MVKKGQEQVSALDSERQGEKRKPEEPKIKHKGEGSKRQTRARPQAEGSGADGS*
Ga0126311_115243322	3300010045	Serpentine Soil	MKSDQQGDVMVKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSESQTRARPQGEG
Ga0126320_14760141	3300010146	Soil	AKEVRMVKKGQEQVSSMDSPRQGQDRNPKEPKVKHKGEGSRSQTRAHPQSEGSGSKG*
Ga0126306_103469502	3300010166	Serpentine Soil	MVKKGQEQVSRRDSPRQGEDRNPNEPKIKHKGGSQSQTRARPPSEGSSSE*
Ga0126317_105585702	3300011332	Soil	LPGGIVVKKGQEQVSRADSPRQGEDVDPSEGKIKHQGGSQSQTNARPQGEGSSSKG*
Ga0126317_107988112	3300011332	Soil	GQEQVSKADSPRQGEPRDPKEPKIKHQGGSKSQSRARPQGAGSSSKG*
Ga0127502_107055672	3300011333	Soil	KTDSLGGLMVKKGQEQVSKADSPRQGEKRNPKEPKVKHQGGSQSQSRARPQGEGSSSKG*
Ga0137376_110331651	3300012208	Vadose Zone Soil	MVKKGQEQVSAQDSPRQGDKRNPQEPKIKHKGEGSKSQTRARPQAEGSGSHGS*
Ga0150985_1013828271	3300012212	Avena Fatua Rhizosphere	LPKESVMVKKGQEQVSKADSPRQGEPRDPEEPKVKHQGGSQSQTRARPQGEGSSSKG*
Ga0150985_1020852402	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSRADSPRQGEKRDPNEPKIKHQGGSQNQTNARPQGEGSSSKG*
Ga0150985_1027843082	3300012212	Avena Fatua Rhizosphere	EQVSKADSPRQGEKRDPNEPKIKHQGGSQNQSRAHGQREGSSSKG*
Ga0150985_1028425251	3300012212	Avena Fatua Rhizosphere	VVKKGQEQVSSMDSPRQGEKRDPNEPKVKHKGEGSRSQTRARPPSEGSSKG*
Ga0150985_1030979351	3300012212	Avena Fatua Rhizosphere	MAKKGEEQVSSADSPRQGEPRNPKDPKIKHKGQGSKNQTNAHPKGEGSGSDG*
Ga0150985_1042530401	3300012212	Avena Fatua Rhizosphere	QEVSGMVKKGQEQVSALDSERQGEKRKPEEPKGKHKGEGSKSQTRARPQAEGSGADGS*
Ga0150985_1047591831	3300012212	Avena Fatua Rhizosphere	PGGAMVKKGQEQVSKADSPRQGEHRDPNEPKIKHQGGSQNQTNARPQGEGSSSKG*
Ga0150985_1068514241	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSRADSPRQGEDRDPKEPKIKHQGGSQNQTRARPKSEGSSSKG*
Ga0150985_1077333491	3300012212	Avena Fatua Rhizosphere	GDVMVKKGQEQVSRADSPRQGEHRDPNEPKIKHQGGSKNQTRARPQGEGSSSKG*
Ga0150985_1094046792	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSRADSPRQGEKRNPDEGKIKHKGEGSKSQTRARPQAEGSGSDG*
Ga0150985_1109532701	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSAQDSPRQGEKRNPEEPKVKHKGEGSKSQTRARPTAEGSGADG*
Ga0150985_1109876042	3300012212	Avena Fatua Rhizosphere	DWETTMVKKGQEQVSKADSPRQGEPRDPNEPKIKHQGGSENQSHARPQGEGSSSKG*
Ga0150985_1112377063	3300012212	Avena Fatua Rhizosphere	EDHVVKKGQEQVSRMDSPRQGEDRNPKEPKIKHKGQGSRSQTRARPPAEGSGADG*
Ga0150985_1119036442	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSKADSPRQGEPRDPEEPKIKHQGGSKNQSRARPQGEGSSSKG*
Ga0150985_1122771372	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSKADSPRQGEPRDPKEPKIKHQGGSKNQSRARPQGEGSSSKG*
Ga0150985_1123423991	3300012212	Avena Fatua Rhizosphere	KFYNSKKQRCAMTKKGEEQVSAADSPRQGEKRNPEEPKIKHKGGSHNQSSAKPQSEGSSKG*
Ga0150985_1141617291	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSKADSPRQGEKRDPEEPKIKHQGGSQNQSRARGQGEGSSSKG*
Ga0150985_1149160251	3300012212	Avena Fatua Rhizosphere	AINQEASMVKKGQEQVSKADSPRQGEPRDPQEPKIKHRGGSKNQSRAQPQGAGSSSKG*
Ga0150985_1170292201	3300012212	Avena Fatua Rhizosphere	KKGQEQVSSMDSEKQGEDRNPKEPKIKHKGGGSHSGRRARPTPEGAGSDG*
Ga0150985_1170444701	3300012212	Avena Fatua Rhizosphere	TNMVKKGQEQVSRMDSPRQGEDRDPKDPKIKHKGDGSHSGRRARPTPEGSGSDG*
Ga0150985_1180382392	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSKADSPRQGEQRDPKEPKIKHQGGSQSQSRARGQGEGSSSKG*
Ga0150985_1184796902	3300012212	Avena Fatua Rhizosphere	VKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSENQSRARGQGEGSSSKG*
Ga0150985_1185795103	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSKADSPRQGEERNPNEPKTKHQGDGSHNQRDARPQGEGSSKG*
Ga0150985_1193019491	3300012212	Avena Fatua Rhizosphere	MVKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSQNQTNARPQGEGSSSKG*
Ga0150985_1198085561	3300012212	Avena Fatua Rhizosphere	MVKKRELQVSKMDSPRQGERVNPDEPKIKHKGNGSRSQSRSKPQSEGSSG*
Ga0150985_1210939201	3300012212	Avena Fatua Rhizosphere	AKEVRMVKKGQEQVSSMDSPRQGQDRDPKEPKVKHRGEGSRSQTRARPQSEGSGSKG*
Ga0150984_1019886531	3300012469	Avena Fatua Rhizosphere	LNTAKRRIATVRDEMTKKGQLEVSRADSPRQGEDRNPKAPKIKRSGGSQSQTRARPQSEGSSSEG*
Ga0150984_1035819061	3300012469	Avena Fatua Rhizosphere	AMVKKGQEQVSSMDSEKQGEDRNPKEPKIKHKGGGSHSGRRARPTPEGAGSDG*
Ga0150984_1046411542	3300012469	Avena Fatua Rhizosphere	EVSGMVKKGQEQVSALDSERQGEKRKPEEPKIKHKGEGSKSQTRARPQAEGSGADGS*
Ga0150984_1055731313	3300012469	Avena Fatua Rhizosphere	MVKKGQEQVSRADSPRQGEKRNPDDGKIKHKGEGSKSQTRARPQAEGSGSDG*
Ga0150984_1066562493	3300012469	Avena Fatua Rhizosphere	ILAERLRDLGDVVVKEGQEQVSRADSPRQGEHRDPNEPKIKHQGGSKNQTRARPQGEGSSSKG*
Ga0150984_1079204281	3300012469	Avena Fatua Rhizosphere	MVKKGQEQVSRADSPRQGERRDPNEPKVKHKGGSQNQTRAHPKSEGTSSKG*
Ga0150984_1103619113	3300012469	Avena Fatua Rhizosphere	VKKGQEQVSRMDSPRQGEDRNPKEPKIKHKGGSQSQTRARPTPEGSGSDG*
Ga0150984_1118909391	3300012469	Avena Fatua Rhizosphere	QLRGNRCTPGGVMVKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSDNQSRARGQGEGSSSKG*
Ga0150984_1120525233	3300012469	Avena Fatua Rhizosphere	VKKGQEQVSSMDSPQQGKARDPNAPKIKHKGEGSKSQTRARPAPEGSGSAGK*
Ga0150984_1137285952	3300012469	Avena Fatua Rhizosphere	ADVRLAHKEVVMVKKGQEEVSRADSPKQGEDRDPKAPKTQHRGEGSQNQSRARPQGEGSGSEG*
Ga0150984_1161748131	3300012469	Avena Fatua Rhizosphere	EVRMVKKGQEQVSSMDSPRQGQDRDPKEPKVKHKGEGSRSQTRARPQSEGSGSKG*
Ga0150984_1192681683	3300012469	Avena Fatua Rhizosphere	DVCSSDLRRCITDTAGDVMVKKGQEQVSKADSPRQGEKRDPKEPKIKHQGGSQNQSRARGQGEGSSSKG*
Ga0150984_1213577981	3300012469	Avena Fatua Rhizosphere	ATMVKKGQEQVSRMDSPRQGEDRNPKDPKIKHKGDGSHSGRRARPTPEGSGSDG*
Ga0164304_107448371	3300012986	Soil	MVRKGQEQVSSMDSPKQGEARDPKAPKIQHKGGSRSGTRARPTPEGSGADG*
Ga0136617_113290282	3300017789	Polar Desert Sand	QASKANSPRQGEDSNPDEPQVKHQGEGSRSQSRAKPPSEGSSKG
Ga0190269_119238751	3300018465	Soil	MVKKGQEQVSRMDSPRQGEDRDPKEGKIKHKGGSESQRRASPPSEGSSKG
Ga0066662_128297282	3300018468	Grasslands Soil	MVKKGQEQVSSMDSPRQGQDRNPKEPKVKHKGEGSRSQTRARPQSEGSSKG
Ga0066669_122672492	3300018482	Grasslands Soil	MVKKGQEQVSAQDSPRQGDNRNPQEPKIKHKGEGSRSQTRARPQAEGSGSHGS
Ga0193598_1000029121	3300018910	Soil	MVKKGQEQVSRMDSPRQGEDRNPDEGKVKHRPKPRGGDGDRNSAQSEGSSKGS
Ga0197907_107898041	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKGEEQVSAADSPRQGEKRNPEDPKIKHKGGSHNQSSAKPQSEGSSKG
Ga0197907_107911471	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKGEEQVSAADSPRQGEKRNPEDPKIKHKGGSQNQSSAKPQSEGSSKG
Ga0206356_102769882	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKGEEQVSAADSPRQGEKRNPEEPKIKHKGGSHNQSNAKPQSEGSSKG
Ga0206350_112297012	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	VYKEAVMVKKGQEEVSRADSPKQGEDRDPKAPKTQHRGEGSQNQSRARPQGEGSGSEG
Ga0224712_106317941	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MVKKGQEQVSAADSPRQGEDRDPNEPKIKHKGGSKNQTRAKPQGEGSSKG
Ga0209172_102521432	3300025310	Hot Spring Sediment	MVKKGQEQISAMDSPRQGDRRNPKDPKIKHTGPGSRSGTRARPQPEGARSGG
Ga0208581_1050372	3300026704	Soil	MVKKGQEQVSAMDSPRQGEKRDPNEPKIKHKGEGSRSQTRAKPQAEGSGADGK
Ga0307288_101816682	3300028778	Soil	MVKKGQEQVSKADSPRQGEERDPNEPKIKHQGGSQNQSRAHGQGEGSSSKG
Ga0206083_1004171	3300029644	Soil	GQENVSRMDSPHQGEPRDPHGAKPQHRGGSGSQSNASPPSEGSSSQS
Ga0102758_110739294	3300030784	Soil	AIRQLSLHPPERSLAVVKKGQEQVSSMDSPRQGEARDPKDPKIKHKGEGSQSQRRSQPNEGDSKG
Ga0308203_10653561	3300030829	Soil	QVSKADSPRQGEKRDPNEPKIKHQGGSQNQSRAHGQGEGSSSKR
Ga0308205_10173721	3300030830	Soil	SHRFKDAHPGGIMVKKGQEQVSKADSPGQGEERDPNEPKIKHQGGSQNQSRAHGQGEGSSSKR
Ga0308202_10298911	3300030902	Soil	RFKDAHPGGIMVKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSQNQSRAHGQGEGSSSK
Ga0308202_11539432	3300030902	Soil	MVKKGQEQVSAVDSPHQGEHRDPDAPKIKHNGGSESQTRAHPKSEGSQGGS
Ga0308206_10494922	3300030903	Soil	MVKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSQNQTRAHPQGEGSSSKG
Ga0308206_11946541	3300030903	Soil	RLFAARRHAMVKKGQEQVSRADSPRQGEPRNPDEPKIKHKGGSQSQTRARPPSEGSSSKG
Ga0308200_11759991	3300030905	Soil	KKGQEQVSAVDSPHQGEHRDPDAPKIKHNGGSESQTRAHPKSEGSQGGS
Ga0102751_13624401	3300031055	Soil	DMVKKGEEQVSSMDSPRQGEKRNPNDPKIKHKGEGSQSARRGKPSEGSSKG
Ga0308189_101338071	3300031058	Soil	NMVKKGQEQVSSMDSPRQGEDRNPKEPKTKHKGEGSRSQTRAHPRPEGSGSK
Ga0308189_102461181	3300031058	Soil	QVSKADSPRQGEERNPNEPKTKHQGDGSHNQRDARPQGEGSSKG
Ga0308189_102510522	3300031058	Soil	VMVKKGQEQVSKADSPRQGEPRDPDEPKVKHQGGSESQTRARPQGEGSSSKG
Ga0308201_100440051	3300031091	Soil	GGIMVKKGQEQVSKADSPRQGEPRDPKEGKIKHQGGSESQSRARPQGEGSSSKG
Ga0308201_100504722	3300031091	Soil	MVKKGEEQVSAMDSPRQGEKRNPKEPKIKHKGGSQNQSRARPKSEGSSSKG
Ga0308201_103041422	3300031091	Soil	VVKKGQEQVSKADSPRQGERVNPEEGKIKHKGGSQNQSRARGQGEGSSSKG
Ga0308201_103504751	3300031091	Soil	HRRLKSSGGIMVKKGQEQVSRMDSPRQGEPRDPNEPKIKHKGGSQSQTRAKPKSEGSSSK
Ga0308201_103542091	3300031091	Soil	NKGGSVVKKGEEQVSKADSPRQGEPRDPDEPKIKHKGGSKNQTNARGQGQGSSSKG
Ga0308204_100661851	3300031092	Soil	MVKKGQEQVSKADSPRQGEPRDPKEPKIKHQGGSKNQSRAKPQGEGSSSKG
Ga0308204_100821991	3300031092	Soil	MVKKGQEQVSKADSPRQGEPVDPKEGKIKHQGGSQSQTRARPQGEGSGSKG
Ga0308204_100944881	3300031092	Soil	PGGIVVKKGQEQVSRADSPRQGEPRDPKEGKIKHQGGSQSQTRARPKGEGSSSKG
Ga0308204_101396791	3300031092	Soil	LKSSGGIMVKKGQEQVSRMDSPRQGEPRDPNEPKIKHKGGSQSQTRAKPKSEGSSSKG
Ga0308204_101903501	3300031092	Soil	REDARATPHTGDVMVKKGQEQVSKADSPRQGEKRDPNEPKIKHQGGSQNQTRAHPQGEGSSSKG
Ga0308204_102067691	3300031092	Soil	RMVKKGQEQVSRMDSPKQGEPRDPNAPKIKHQGGSGSGRAARGQTEGAGSKG
Ga0308204_102169031	3300031092	Soil	AMVKKGQEQVSRMDSPRQGEPRNPDDPKIKHQGGSASGQRGRGQNEGAGNKG
Ga0307415_1023935082	3300032126	Rhizosphere	MVKKGQEQVSKADSPRQGEPRDPDEPKIKHQGGSESQSRARPQGEGSS
Ga0334909_018938_61_213	3300033988	Soil	MVKKGQEQVSRMDSPRQGEDRDPKEGKIKHKGGSESQRRATPPSEGSSKG
Ga0334922_058458_68_220	3300034003	Hypolithic Biocrust	MVKKGQEQVSRMDSPRQGEERDPKEGKIKHKGGSESQRRASPPSEGSSKG
Ga0334944_028670_695_847	3300034009	Sub-Biocrust Soil	MVKKGEEQVSSMDSPRQGEKRNPDDPKIKHKGEGSQSARRGKPSEGSSKG
Ga0334913_009623_604_756	3300034172	Sub-Biocrust Soil	MVKKGQEQVSRMDSPRQGEARDPKEGKIKHKGGSESQRRATPPSEGSSKG
Ga0334913_011154_793_966	3300034172	Sub-Biocrust Soil	MPGKSERSAEMVKKGQEQVSRIDSPRQGEERDPKEGKIKHKGGSQSQRRATPPSEGS
Ga0334960_003614_1339_1521	3300034402	Sub-Biocrust Soil	MPGKSERSAEMVKKGQEQVSRMDSPRQGEDRDPKEGKIKHKGGSQSQRRATPPSEGSSKG
Ga0334948_000015_198281_198436	3300034760	Sub-Biocrust Soil	MMVKKGQEQVSRMDSPRQGEDRNPKEGKIKHKGGSESQRRASPPSEGSSKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066650

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences