3300033446: Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.202

Overview

Basic Information

• IMG/M Taxon OID: 3300033446
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0344147 | Ga0316611
• Sample Name: Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.202
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 314944902
• Sequencing Scaffolds: 14
• Novel Protein Genes: 17
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electronema → unclassified Candidatus Electronema → Candidatus Electronema sp. GS	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon llansteffanensis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → sinkhole → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 45.1993
  • Long. (^o): -83.3279
  • Alt. (m): N/A
  • Depth (m): 185

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F044511	Metagenome / Metatranscriptome	154	Y
F079740	Metagenome / Metatranscriptome	115	Y
F084884	Metagenome / Metatranscriptome	112	Y
F095378	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0316611_1008386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electronema → unclassified Candidatus Electronema → Candidatus Electronema sp. GS	3266
Ga0316611_1013526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2517
Ga0316611_1020407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1987
Ga0316611_1026943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon llansteffanensis	1688
Ga0316611_1033778	Not Available	1473
Ga0316611_1033823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1471
Ga0316611_1057536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1042
Ga0316611_1059832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1015
Ga0316611_1062399	All Organisms → cellular organisms → Bacteria	987
Ga0316611_1063187	All Organisms → cellular organisms → Bacteria	978
Ga0316611_1067314	All Organisms → cellular organisms → Bacteria	936
Ga0316611_1085373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	792
Ga0316611_1086586	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	784
Ga0316611_1111554	All Organisms → cellular organisms → Bacteria	655

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0316611_1008386	Ga0316611_10083863	F002525	VWAGVDSVWEQEKLEARKMLENAAESHTSGARFVRRG
Ga0316611_1013526	Ga0316611_10135261	F044511	SGQQAGCLTKRAPDAGDSGAIPSLFLRLSIFPIGRRSAARPSAGNANR
Ga0316611_1020407	Ga0316611_10204071	F084884	PTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVGTPLAKLVKSKRD
Ga0316611_1026445	Ga0316611_10264454	F079740	MRTQVISFPNKQTLCVFPDKPSDLEQAISELKLDGNSPVIVLIGGVIDKQQAEATRQ
Ga0316611_1026943	Ga0316611_10269432	F044511	KHKRQPTKRAPDAGDSAAFSSLFLRLSLFPVGRRSAAHPSAGNANR
Ga0316611_1033778	Ga0316611_10337783	F095378	MKAILIDELVKYQSTTEQVSVTIEGKKLEGWEIAKPLNYEKKYTRFTDRLKSSIKVLTGKAIAVQFFTDLTEQDKIAYVKTKLN
Ga0316611_1033823	Ga0316611_10338233	F044511	KRAPDAGDSGAIPSIFLRLSIFPVGRRSAARPSAGNANR
Ga0316611_1057536	Ga0316611_10575363	F002525	VWAGVDNVWEQENAEARKMLENAAESHTSGARFVG
Ga0316611_1059832	Ga0316611_10598321	F002525	NVWKREKLEARKLLENRAESPASGARFVRRGFIHQVLVR
Ga0316611_1062399	Ga0316611_10623992	F084884	TLGILARFQAFFYALSFSQSDGVPPPAPARVTQTVVPLL
Ga0316611_1063187	Ga0316611_10631873	F084884	VHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQAVGHFLAE
Ga0316611_1067314	Ga0316611_10673143	F084884	LGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLAQPK
Ga0316611_1067810	Ga0316611_10678102	F079740	MRTQKIYFPDQQEVLCVFPNKRSNLEQAISELRLGGNY
Ga0316611_1085373	Ga0316611_10853731	F084884	LGILARFQAFFYALSFSQSDGVPPPDPARVTQTVGQFLAKHH
Ga0316611_1086586	Ga0316611_10865861	F084884	GILARFQAFFYASAFFQSDGVPPPAPARVTQTVSP
Ga0316611_1111554	Ga0316611_11115542	F084884	VHPTLGILARFQAFFYASTFSQSDGVPPPTPARVTQTVRQIFGEIDL
Ga0316611_1158904	Ga0316611_11589041	F079740	MRTKKISFPGQQSLCVFPNNRSELAQAISELHLNGNSPVIVLIGGEIDEKEAEATHRA