Basic Information | |
---|---|
IMG/M Taxon OID | 3300033170 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0136119 | Gp0356200 | Ga0334884 |
Sample Name | Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R1 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 576157768 |
Sequencing Scaffolds | 17 |
Novel Protein Genes | 21 |
Associated Families | 17 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii | 1 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga | 1 |
All Organisms → cellular organisms → Bacteria → FCB group | 1 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon | 1 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Atribacterota | 1 |
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276 | 1 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands |
Type | Engineered |
Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | Netherlands: Wageningen, Gelderland | |||||||
Coordinates | Lat. (o) | 51.9691 | Long. (o) | 5.6654 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001849 | Metagenome / Metatranscriptome | 626 | Y |
F003987 | Metagenome / Metatranscriptome | 458 | Y |
F004383 | Metagenome / Metatranscriptome | 440 | Y |
F005744 | Metagenome / Metatranscriptome | 391 | Y |
F039153 | Metagenome / Metatranscriptome | 164 | Y |
F054061 | Metagenome / Metatranscriptome | 140 | Y |
F059692 | Metagenome / Metatranscriptome | 133 | N |
F066219 | Metagenome / Metatranscriptome | 127 | Y |
F070092 | Metagenome | 123 | N |
F071725 | Metagenome | 122 | N |
F075034 | Metagenome / Metatranscriptome | 119 | Y |
F077264 | Metagenome / Metatranscriptome | 117 | Y |
F079824 | Metagenome / Metatranscriptome | 115 | N |
F080090 | Metagenome / Metatranscriptome | 115 | Y |
F093482 | Metagenome | 106 | N |
F093892 | Metagenome | 106 | Y |
F099347 | Metagenome / Metatranscriptome | 103 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0334884_1002316 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 24633 | Open in IMG/M |
Ga0334884_1037691 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 2221 | Open in IMG/M |
Ga0334884_1041868 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii | 2026 | Open in IMG/M |
Ga0334884_1044563 | Not Available | 1915 | Open in IMG/M |
Ga0334884_1051551 | All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga | 1681 | Open in IMG/M |
Ga0334884_1053645 | All Organisms → cellular organisms → Bacteria → FCB group | 1626 | Open in IMG/M |
Ga0334884_1059559 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon | 1482 | Open in IMG/M |
Ga0334884_1064643 | Not Available | 1380 | Open in IMG/M |
Ga0334884_1066730 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon | 1342 | Open in IMG/M |
Ga0334884_1082368 | All Organisms → cellular organisms → Bacteria | 1118 | Open in IMG/M |
Ga0334884_1088953 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium | 1047 | Open in IMG/M |
Ga0334884_1093443 | All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | 1003 | Open in IMG/M |
Ga0334884_1109359 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium | 876 | Open in IMG/M |
Ga0334884_1109807 | All Organisms → cellular organisms → Bacteria → Atribacterota | 873 | Open in IMG/M |
Ga0334884_1130313 | All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276 | 753 | Open in IMG/M |
Ga0334884_1138180 | Not Available | 716 | Open in IMG/M |
Ga0334884_1158002 | Not Available | 638 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0334884_1002316 | Ga0334884_100231625 | F039153 | MLYSVITPEREKKYHTEVKFFNNSHGARRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDRPKESELLVVDLIQIIANGQAYLVAIDTLGPSENHLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERS |
Ga0334884_1019246 | Ga0334884_10192462 | F066219 | MKKVFLVFLILCIGCLIHANIVEFFESIPPVIKYAVGTAITVYALSWAYSWVFDPIIIITPNGYGAFNFGPFIVIEPDIWYSNNTKWKNIVLNHEYTHYVQHAVYGPILSISYPILALYSNIKSGNQWDENYWEIQANLATDEPPSWNPAFVWEW |
Ga0334884_1037691 | Ga0334884_10376913 | F039153 | MKYTVMTPAATKQYNTTVLFLNNSHGARRLNFSPLHKEIKKWAKHQGYSAKLYLRSAAIECNNPDLPKESELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEYNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERA |
Ga0334884_1041868 | Ga0334884_10418684 | F080090 | ALWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT |
Ga0334884_1044563 | Ga0334884_10445632 | F005744 | MDEMFEIIKAGAPDGPPEQALYRIQQTYPDGSGGRLNVDWDGLRRLHGLIHDRIALEGYACETCDTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE |
Ga0334884_1044563 | Ga0334884_10445636 | F054061 | MDEMFEIIKAGAPNGPPEQALYRIQQTYSDGSGGRLNVDWDGLLRLHEVIHDRIALEGY |
Ga0334884_1051551 | Ga0334884_10515512 | F070092 | MAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG |
Ga0334884_1053645 | Ga0334884_10536454 | F093892 | QILSGSIMIFLFKYKANQPAEPVKIKTSPFRNLDETCSLVEEVFKREKSKEKKTYFCRTRGRIDGSI |
Ga0334884_1059559 | Ga0334884_10595591 | F075034 | GRVDRTMIYCHSCGCETTADRICPACAEALGERCRVHRVRYVEDLPVSVLEEMQVERGRR |
Ga0334884_1064643 | Ga0334884_10646433 | F066219 | MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKPDWEPSFVIELE |
Ga0334884_1066730 | Ga0334884_10667303 | F005744 | MDEMFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHEVIHDRIALEGRVCETCGTKGCHRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEIRRLVEE |
Ga0334884_1082368 | Ga0334884_10823682 | F001849 | MHILYTPMLASGIWIGGGSVGLLLVIVIVVLLVRR |
Ga0334884_1088953 | Ga0334884_10889532 | F079824 | MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRKVISNYKTVFSEYIPIEEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPITHIRADVVGQLYDSNEIVAVPPKRVRKRKKKEDE |
Ga0334884_1093443 | Ga0334884_10934432 | F004383 | MACDCESPCRECKGNGSECGMDPAECGHAVLPSSDNLLERAFMARVRADEYAQELNRLQKEFDARPDVLDLKRRIERCEEVRRQCIEQAKAAGISKQGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKETGVSVEYVRPEVGE |
Ga0334884_1093443 | Ga0334884_10934433 | F003987 | MIPALPCGTFSDGDTLAGAFYVAAFEDGDRTHHVGEYRIETLVRALRALQACGNDDVEIGSIERGGRQHLLLIGLDGEARFGDRQIGCIVVCPVVVDSRGRYGSSSTATTPRRYSAAATDTSRTC |
Ga0334884_1109359 | Ga0334884_11093592 | F071725 | MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFQELEKLSKVESLPE |
Ga0334884_1109807 | Ga0334884_11098072 | F093482 | VEERTLDELWERIEKEDPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWFIQSRLRKHGGKCLHEH |
Ga0334884_1130313 | Ga0334884_11303131 | F059692 | DKETEQLILKKLQLDYLSLHAILTDVEKIISALVVDLDPRVNEIQRIQDQIRVYLREP |
Ga0334884_1130313 | Ga0334884_11303133 | F099347 | MNLADFIENFEAFITYIEEAWEQKDLEILKAIVSDCEDFIHSHGHQFKCYSQTVKEWKETYRKNREERKEIVKGICEWCGRKKGTNCHHLAKRGRLVLYNDVRLLRILCADCHRLFHS |
Ga0334884_1138180 | Ga0334884_11381801 | F070092 | MAINDRLKPVMELLETNRQKIDLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIKDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGF |
Ga0334884_1158002 | Ga0334884_11580022 | F077264 | ADWFGPPGPERFVHMALKLIWNLRADSAWIELVKVQAIETGRSSPGAFVRDLVWTLSKNPTIKNRIFEAMQGVQYGQR |
⦗Top⦘ |