Metagenome Family F093892

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093892
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	50 residues
Representative Sequence	MIFLSKYQDNQPAEPVKIKTSPFRNLDRTCNLIEEVFTREKSTERKTYFCKPVV
Number of Associated Samples	80
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.08 %
% of genes near scaffold ends (potentially truncated)	34.91 %
% of genes from short scaffolds (< 2000 bps)	85.85 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.830 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (14.151 % of family members)
Environment Ontology (ENVO)	Unclassified (22.642 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (42.453 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.07% β-sheet: 21.95% Coil/Unstructured: 60.98%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13683	rve_3	50.00
PF01527	HTH_Tnp_1	13.21
PF00665	rve	1.89
PF02867	Ribonuc_red_lgC	0.94
PF14310	Fn3-like	0.94
PF14897	EpsG	0.94
PF02706	Wzz	0.94
PF13358	DDE_3	0.94
PF00691	OmpA	0.94
PF13715	CarbopepD_reg_2	0.94
PF09945	DUF2177	0.94
PF13643	DUF4145	0.94
PF12771	SusD-like_2	0.94
PF01609	DDE_Tnp_1	0.94
PF13701	DDE_Tnp_1_4	0.94
PF07944	Glyco_hydro_127	0.94
PF02397	Bac_transf	0.94
PF01522	Polysacc_deac_1	0.94
PF05598	DUF772	0.94
PF13276	HTH_21	0.94
PF14322	SusD-like_3	0.94
PF00072	Response_reg	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.89
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.89
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.89
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.89
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.94
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.94
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.94
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	0.94
COG3533	Beta-L-arabinofuranosidase, GH127 family	Carbohydrate transport and metabolism [G]	0.94
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.94
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	0.94
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.94
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
All Organisms	root	All Organisms	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
cellular organisms	root	All Organisms → cellular organisms	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	33.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	31.13 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	31.13 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4.72 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	12.26 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4.72 %
Lactobacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	0.94 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Marinilabiliales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	6.60 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	4.72 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1.89 %
Lactobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae	0.94 %
Bacteroidetes bacterium RBG_13_42_15	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_13_42_15	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Marinilabiliaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae	4.72 %
unclassified Clostridiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae	4.72 %
unclassified Bacteroidales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales	0.94 %
Prolixibacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	0.94 %
Limosilactobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Limosilactobacillus	0.94 %
Bacteroidetes bacterium RBG_13_42_15	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_13_42_15	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4.72 %
Geofilum	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Geofilum	0.94 %
Saccharicrinis	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis	0.94 %
Limosilactobacillus reuteri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Limosilactobacillus → Limosilactobacillus reuteri	0.94 %
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	0.94 %
Prolixibacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	0.94 %
Bacteroidetes bacterium RBG_13_42_15	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_13_42_15	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4.72 %
Geofilum rubicundum	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Geofilum → Geofilum rubicundum	0.94 %
Saccharicrinis	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis	0.94 %
Limosilactobacillus reuteri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Limosilactobacillus → Limosilactobacillus reuteri	0.94 %
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	0.94 %
Prolixibacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	0.94 %
Bacteroidetes bacterium RBG_13_42_15	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_13_42_15	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918008\|ConsensusfromContig124823	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5864	Open in IMG/M
3300003988\|Ga0055475_10255355	Not Available	559	Open in IMG/M
3300004005\|Ga0055448_10364139	Not Available	575	Open in IMG/M
3300004065\|Ga0055481_10230508	Not Available	787	Open in IMG/M
3300005782\|Ga0079367_1228257	Not Available	714	Open in IMG/M
3300005832\|Ga0074469_10008868	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1669	Open in IMG/M
3300005832\|Ga0074469_10509837	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	8326	Open in IMG/M
3300006431\|Ga0099701_101941	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae	1591	Open in IMG/M
3300006667\|Ga0101751_114188	Not Available	694	Open in IMG/M
3300006669\|Ga0101735_106203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1478	Open in IMG/M
3300008516\|Ga0111033_1046832	Not Available	2493	Open in IMG/M
3300008516\|Ga0111033_1192653	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1333	Open in IMG/M
3300008517\|Ga0111034_1118575	All Organisms → cellular organisms → Bacteria → FCB group	1166	Open in IMG/M
3300008517\|Ga0111034_1141343	Not Available	1819	Open in IMG/M
3300009078\|Ga0105106_10042954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3344	Open in IMG/M
3300009078\|Ga0105106_11079053	Not Available	570	Open in IMG/M
3300009082\|Ga0105099_10181461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Geofilum → Geofilum rubicundum	1198	Open in IMG/M
3300009087\|Ga0105107_11024562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	575	Open in IMG/M
3300009091\|Ga0102851_12753066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Limosilactobacillus → Limosilactobacillus reuteri	564	Open in IMG/M
3300009149\|Ga0114918_10223481	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1082	Open in IMG/M
3300009153\|Ga0105094_10790889	Not Available	557	Open in IMG/M
3300009153\|Ga0105094_10930482	Not Available	514	Open in IMG/M
3300009566\|Ga0130025_1150873	Not Available	608	Open in IMG/M
3300009658\|Ga0116188_1046451	Not Available	2000	Open in IMG/M
3300009664\|Ga0116146_1072582	Not Available	1530	Open in IMG/M
3300009689\|Ga0116186_1115072	Not Available	1309	Open in IMG/M
3300009713\|Ga0116163_1070705	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300009772\|Ga0116162_10174523	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	933	Open in IMG/M
3300009772\|Ga0116162_10385080	Not Available	570	Open in IMG/M
3300010302\|Ga0116202_10106355	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae	1371	Open in IMG/M
3300012931\|Ga0153915_10369814	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300012931\|Ga0153915_10500435	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1389	Open in IMG/M
3300012964\|Ga0153916_10269664	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300012964\|Ga0153916_10278558	Not Available	1700	Open in IMG/M
3300012964\|Ga0153916_10387707	Not Available	1454	Open in IMG/M
3300012964\|Ga0153916_11651649	Not Available	715	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10477156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	750	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10224873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1250	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10841020	Not Available	564	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10677186	Not Available	654	Open in IMG/M
3300015250\|Ga0180072_1101625	Not Available	512	Open in IMG/M
3300017938\|Ga0187854_10038757	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300018068\|Ga0184636_1094468	Not Available	1020	Open in IMG/M
3300018070\|Ga0184631_10042329	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1637	Open in IMG/M
3300018070\|Ga0184631_10268129	Not Available	707	Open in IMG/M
3300022556\|Ga0212121_10205835	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae	1388	Open in IMG/M
3300022556\|Ga0212121_10607223	Not Available	685	Open in IMG/M
3300024262\|Ga0210003_1050109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2136	Open in IMG/M
3300025145\|Ga0209609_10283309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	518	Open in IMG/M
3300025495\|Ga0207932_1021036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1769	Open in IMG/M
3300025615\|Ga0210086_1132961	Not Available	730	Open in IMG/M
3300025638\|Ga0208198_1151109	Not Available	618	Open in IMG/M
3300025716\|Ga0209746_1165158	Not Available	613	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10056555	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1327	Open in IMG/M
3300027900\|Ga0209253_10943688	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027902\|Ga0209048_10182408	Not Available	1540	Open in IMG/M
3300028161\|Ga0265596_1147464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	505	Open in IMG/M
3300028162\|Ga0268278_1123549	Not Available	594	Open in IMG/M
3300028169\|Ga0268279_1163445	Not Available	572	Open in IMG/M
3300028191\|Ga0265595_1245327	Not Available	519	Open in IMG/M
3300028272\|Ga0265592_1078125	Not Available	778	Open in IMG/M
3300028276\|Ga0268282_1031057	Not Available	1367	Open in IMG/M
3300031257\|Ga0315555_1331239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	555	Open in IMG/M
3300031275\|Ga0307437_1182562	Not Available	570	Open in IMG/M
3300031278\|Ga0307431_1005282	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5759	Open in IMG/M
3300031278\|Ga0307431_1010665	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	3620	Open in IMG/M
3300031278\|Ga0307431_1078659	Not Available	884	Open in IMG/M
3300031337\|Ga0307430_1066779	Not Available	1117	Open in IMG/M
3300031351\|Ga0307427_1027169	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1778	Open in IMG/M
3300031355\|Ga0307421_1043228	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1637	Open in IMG/M
3300031356\|Ga0307439_1168278	Not Available	583	Open in IMG/M
3300031358\|Ga0307438_1062144	Not Available	1201	Open in IMG/M
3300031365\|Ga0307443_1182798	Not Available	517	Open in IMG/M
3300031539\|Ga0307380_10740049	Not Available	822	Open in IMG/M
3300031539\|Ga0307380_10965963	Not Available	684	Open in IMG/M
3300031539\|Ga0307380_11228956	Not Available	578	Open in IMG/M
3300031565\|Ga0307379_11188057	Not Available	633	Open in IMG/M
3300031566\|Ga0307378_10484062	Not Available	1114	Open in IMG/M
3300031566\|Ga0307378_11518163	Not Available	509	Open in IMG/M
3300031578\|Ga0307376_10013396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	6714	Open in IMG/M
3300031578\|Ga0307376_10864869	Not Available	554	Open in IMG/M
3300031651\|Ga0315543_1088610	All Organisms → cellular organisms → Bacteria → FCB group	1060	Open in IMG/M
3300031651\|Ga0315543_1144448	Not Available	696	Open in IMG/M
3300031654\|Ga0315549_1095477	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1407	Open in IMG/M
3300031864\|Ga0315538_1016205	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	2708	Open in IMG/M
3300031873\|Ga0315297_10285203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1374	Open in IMG/M
3300031999\|Ga0315274_11571953	Not Available	620	Open in IMG/M
3300032029\|Ga0315546_1001993	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12250	Open in IMG/M
3300032053\|Ga0315284_10425829	Not Available	1631	Open in IMG/M
3300032053\|Ga0315284_11864966	Not Available	617	Open in IMG/M
3300032156\|Ga0315295_11083111	Not Available	791	Open in IMG/M
3300032163\|Ga0315281_10290783	Not Available	1787	Open in IMG/M
3300032163\|Ga0315281_12261274	Not Available	513	Open in IMG/M
3300032173\|Ga0315268_12144795	Not Available	573	Open in IMG/M
3300032401\|Ga0315275_10316748	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300032401\|Ga0315275_10365873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1616	Open in IMG/M
3300032401\|Ga0315275_10572760	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1262	Open in IMG/M
3300033169\|Ga0334887_1018395	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3658	Open in IMG/M
3300033169\|Ga0334887_1096047	Not Available	925	Open in IMG/M
3300033170\|Ga0334884_1053645	All Organisms → cellular organisms → Bacteria → FCB group	1626	Open in IMG/M
3300033433\|Ga0326726_10000233	All Organisms → cellular organisms → Bacteria	53843	Open in IMG/M
3300033433\|Ga0326726_10021463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis	5613	Open in IMG/M
3300033481\|Ga0316600_11344482	Not Available	508	Open in IMG/M
3300033486\|Ga0316624_10196093	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300033489\|Ga0299912_10272571	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1428	Open in IMG/M
3300033521\|Ga0316616_103484586	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_13_42_15	592	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.57%
Engineered	Engineered	9.43%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	70.75%
Terrestrial	Environmental → Terrestrial	19.81%
Wastewater	Engineered → Wastewater	6.60%
Bioreactor	Engineered → Bioreactor	2.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	33.96%
Marine	Environmental → Aquatic → Marine	25.47%
Soil	Environmental → Terrestrial → Soil	16.98%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	6.60%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	5.66%
Sediment	Environmental → Aquatic → Sediment	5.66%
Anaerobic	Engineered → Bioreactor → Anaerobic	2.83%
Peat	Environmental → Terrestrial → Peat	1.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.94%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	18.87%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.09%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.55%
Clay	Environmental → Terrestrial → Soil → Clay	7.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	6.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	6.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.66%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Coastal	Environmental → Aquatic → Marine → Coastal	4.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.83%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	2.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.89%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.94%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	15.09%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	14.15%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.72%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	4.72%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.83%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	2.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.89%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.94%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	14.15%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	9.43%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	7.55%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	6.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.66%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	5.66%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	5.66%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	5.66%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	4.72%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	3.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.83%
Sediment	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Sludge	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge	2.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.89%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.94%
Aquifer Solids	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300003988	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2	Environmental	Open in IMG/M
3300004005	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2	Environmental	Open in IMG/M
3300004065	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2	Environmental	Open in IMG/M
3300005782	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3	Environmental	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006431	T18 (1) (BES), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom ? benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006667	T8 (1) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006669	T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009566	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB	Environmental	Open in IMG/M
3300009658	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG	Engineered	Open in IMG/M
3300009664	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG	Engineered	Open in IMG/M
3300009689	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG	Engineered	Open in IMG/M
3300009713	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC107_MetaG	Engineered	Open in IMG/M
3300009772	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC105_MetaG	Engineered	Open in IMG/M
3300010302	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental	Open in IMG/M
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental	Open in IMG/M
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental	Open in IMG/M
3300015250	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293B_16_10D	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300022556	Kivu_combined assembly	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300025145	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG (SPAdes)	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025615	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025638	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025716	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)	Environmental	Open in IMG/M
3300027799 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028161	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_60m	Environmental	Open in IMG/M
3300028162	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_55m	Environmental	Open in IMG/M
3300028169	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m	Environmental	Open in IMG/M
3300028191	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_50m	Environmental	Open in IMG/M
3300028272	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_120m	Environmental	Open in IMG/M
3300028276	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m	Environmental	Open in IMG/M
3300031257	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-80	Environmental	Open in IMG/M
3300031275	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-90	Environmental	Open in IMG/M
3300031278	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170	Environmental	Open in IMG/M
3300031337	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-130	Environmental	Open in IMG/M
3300031351	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-190	Environmental	Open in IMG/M
3300031355	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-70	Environmental	Open in IMG/M
3300031356	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-90	Environmental	Open in IMG/M
3300031358	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-110	Environmental	Open in IMG/M
3300031365	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1601-220	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031651	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-210	Environmental	Open in IMG/M
3300031654	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-200	Environmental	Open in IMG/M
3300031864	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-230	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032029	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-170	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033169	Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_18_07-R1	Engineered	Open in IMG/M
3300033170	Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R1	Engineered	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_05604420	2140918008	Soil	MIFLSKYQDNQPAETVKIKTNTFRNLDRTCILIEKVFTREKSTERKTYFCKPVV
Ga0055475_102553552	3300003988	Natural And Restored Wetlands	MIFLSKYQDNQLAEPVKIKTSPFRNLDRICILIEEVFTREKSIERKTYFCKPVV
Ga0055448_103641391	3300004005	Natural And Restored Wetlands	MIFLSKYQNNQLAEPVKIKTSPFRNLDRICILIEEVFTREKSIERKTYFCKPVV*
Ga0055481_102305082	3300004065	Natural And Restored Wetlands	MIFLSKYQDNQLAEPVKIKTSPFRNLDRTCFLIDEVFTREKSIERKTYFCKPVV*
Ga0079367_12282572	3300005782	Marine Sediment	MIFLSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSIKKKTYFCKPVV*
Ga0074469_100088684	3300005832	Sediment (Intertidal)	MILLYKYQDNQPAEPVKIKTSPFRNLDRTCILIEEVFTGEKSSRRKTYI*
Ga0074469_105098371	3300005832	Sediment (Intertidal)	MIFLSKCQDNQLAEPVKIKTSPFRNLDRTCILIEEVFTREKSARRKTYI*
Ga0099701_1019413	3300006431	Sediment	MIFLSKYQDNQLAEPVKTKTSPFRSLDRTCNQIEEVFTREKSSERKTYI*
Ga0101751_1141882	3300006667	Sediment	MIFLSKYQDNQLAEPVKTKTSPFRSLDRTCNQIEEVFTREKSSER
Ga0101735_1062033	3300006669	Sediment	MIFLSKYQDNQLAEPVKTKTSPFRSLDRTCNQIEEVFTREKSPERKTYI*
Ga0111033_10468321	3300008516	Marine Sediment	MIFLSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKS
Ga0111033_11926532	3300008516	Marine Sediment	LSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSIKKKTYFCKPVV*
Ga0111034_11185752	3300008517	Marine Sediment	LSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSRERKTYFSKSVV*
Ga0111034_11413434	3300008517	Marine Sediment	MIFLSKYQDNQPSEPVKIKTSPFRNLDRTCNLIEEVFTREKSSEKKTYIWKPVV*
Ga0105106_100429544	3300009078	Freshwater Sediment	MIFLSKYQDNQPAEPVKTKTSPFRNLERTCNLIEEVFTREKYTERKTYL*
Ga0105106_110790531	3300009078	Freshwater Sediment	MIFLSKQQDNQPAEPVKIKTSPFRNLDRTCILFKEVFREEKSTEKKTYFCKPVV*
Ga0105099_101814613	3300009082	Freshwater Sediment	MIFLSKYQDNQPAEPVKIKTSSFRNLDRTCNLIEEVFTREKSKERKTYFC*
Ga0105107_110245621	3300009087	Freshwater Sediment	MIFLSKYQDNQPAEPVKTKTSPFRNLERTCNLIEEVFTREKSKERKTYFCKSVV*
Ga0102851_127530662	3300009091	Freshwater Wetlands	MIFLFKYQDNQPAEPVKIKTSPFRNLDRTCNLIEEVFRREKSKERKTYFCKSVV*
Ga0114918_102234813	3300009149	Deep Subsurface	MIFLSKYQDNQPTEPVKTKTSPFRNLDRTCNLIEEIFRREKSSERKTYI
Ga0105094_107908891	3300009153	Freshwater Sediment	MIFLSKYQVNQLAEPVKIKTSPFRNLDRTCNLKEEVFTREKSSGRKTYI*
Ga0105094_109304822	3300009153	Freshwater Sediment	RSSDPGKQILSGSIMIFLSKYQDNQPTEPVKIKTSPFRNLDRTCNLIEEVFTREKSSRRKTYIWKPVV*
Ga0130025_11508732	3300009566	Aquifer Solids	MMIFPYKYRDNQPAEPVKTRTSPFRSLDRTCSQIEEVFTREKSSGKKTYICETVV*
Ga0116188_10464515	3300009658	Anaerobic Digestor Sludge	MIFLSKYQNNQTAEPVKIKTSPFRNLDRTRIQIEKVFTKEKSSRKKPIFV*
Ga0116146_10725823	3300009664	Anaerobic Digestor Sludge	MIFLSKYQNNQTAEPVKIKSSPFRNLDRTRILIEKVFTKEKSSRKKPIFV*
Ga0116186_11150723	3300009689	Anaerobic Digestor Sludge	FKGSIMIFLSKYKDNQTTEPVKIKTSSFRNLDRTCILFEEVFTREKSTEKKTYFCNLVV*
Ga0116163_10707051	3300009713	Anaerobic Digestor Sludge	MTFSSKYQDNQTAESVKIKTSSFRNLDRTCILIEKVFTRENHRRRKLIF
Ga0116162_101745231	3300009772	Anaerobic Digestor Sludge	MTFSSKYQDNQTAESVKIKTSSFRNLDRTCILIEKVFTRENHRRRK
Ga0116162_103850801	3300009772	Anaerobic Digestor Sludge	MTFSSKYQDNQTAEPVKIKTSPFRNLDRTCILIEKVFTRENH
Ga0116202_101063553	3300010302	Anoxic Lake Water	MIFLYKYQVNQLAEPVKIKTSPFRNLDRTCILIEKVFTREKSSRKKTYI*
Ga0153915_103698142	3300012931	Freshwater Wetlands	MIFLSKYQDNQPAEPFKIKTSPFRNLDRTCNLIEEVFRREKSSRRKTYFCKPVV*
Ga0153915_105004351	3300012931	Freshwater Wetlands	MIFLFKYQDNQPAEPVKIKTSPFRNLDRTCNLIEEVFRIEKSKEKKTYFCKPVV*
Ga0153916_102696643	3300012964	Freshwater Wetlands	MIFLSKYQDNQPAEPFKIKTSPFRNLGRTCNLIEEVFRREKSSRRKTYFCKPVV*
Ga0153916_102785583	3300012964	Freshwater Wetlands	MIFLSKYQNNQLAEPVKIKASPYRNLDRTCNLIEEAFRREKSKERKTYFC*
Ga0153916_103877073	3300012964	Freshwater Wetlands	MIFLSKYQDNQPAESVKIKTSLYRNLDRTCNLIEEVFTREKSIVKKTYFCKPVV*
Ga0153916_116516492	3300012964	Freshwater Wetlands	MIFLFKYQDNQLAEPVKIKTSPFRNLDRNCNLIEEVFTREKSIERKTYFCKSVV*
(restricted) Ga0172366_104771562	3300013128	Sediment	MIFLSKYQDNQPAEPVKIKTSPFRNLDRTCILIEEVFTREKSTRKKTYI*
(restricted) Ga0172364_102248733	3300013129	Sediment	MIFLSKYQYNQPAEPVKIKTSPFRNLDRTCILIEKVFTREKSSRKK
(restricted) Ga0172364_108410201	3300013129	Sediment	KYQVNQLAEPVKIKTSPFRNLDRTCILIEEVFTREKSTRKKTYI*
(restricted) Ga0172375_106771861	3300013137	Freshwater	MIFLSKYQNNQPAEPVKIKTSPFRNLDRTCILMEKVFREEK*
Ga0180072_11016252	3300015250	Soil	MIFLCKYQDNQLAEPVKIKTSPFRNLDRTCNLFEEVFTREKSTKKKTYFCKTVV*
Ga0187854_100387571	3300017938	Peatland	MIFLSKYQDNQPTEPIKTKTSPLRSLDRTCNLFKEVFRIEKSSERKTYI
Ga0184636_10944682	3300018068	Groundwater Sediment	MIFLSKYQDNQTTEPVKIKTSPFRNLDRTCNLIEEVFTREKSSGRK
Ga0184631_100423293	3300018070	Groundwater Sediment	MIFLSKYQDNQTTEPVKIKTSPFRNLDRTCNLIEEVFTREKSSGRKTYIWKLVV
Ga0184631_102681291	3300018070	Groundwater Sediment	MIFLYKHQDNQPAEPVKIKTSPFRNLDRTCNLFEEVFTREKSSEKKTYFCKPVV
Ga0212121_102058353	3300022556	Anoxic Lake Water	MIFLYKYQVNQLAEPVKIKTSPFRNLDRTCILIEKVFTREKSSRKKTYI
Ga0212121_106072232	3300022556	Anoxic Lake Water	MIFLSKYQNNHLAEPVKIKTSPYRNLDRTCNLIEEVFRREKSKERKTYFCKSVV
Ga0210003_10501093	3300024262	Deep Subsurface	MIFISKYQDNQPTEPVKTKTSPFRSLDRTCNLIEEVFTREKSSRRKTYIWKPVV
Ga0209609_102833092	3300025145	Anoxic Lake Water	MIFLSKYQNNQPAEPVKIKTSPFRNLDRTCILMEKVFREEK
Ga0207932_10210361	3300025495	Arctic Peat Soil	MIFLSKYQDNQPAEPVKTKTSPFRSLDRTCNLFKEVFRIEKSSERKTYI
Ga0210086_11329612	3300025615	Natural And Restored Wetlands	MIFLSKYQNNQLAEPVKIKTSPFRNLDRICILIEEVFTREKSIERKTYFCKPVV
Ga0208198_11511092	3300025638	Anaerobic Digestor Sludge	MIFLSKYQNNQTAEPVKIKTSPFRNLDRTRIQIEKVFTKEKSSRKKPIFV
Ga0209746_11651581	3300025716	Arctic Peat Soil	MIFRTNCKDNQTTEPVKIKTSPFRDLNRTCKLIEEVFTREKSSKRK
(restricted) Ga0233416_100565551	3300027799	Sediment	MIFLSKYQDNQTTEPVKIKTSPFRNLDRTCKLNEEVFREENSIEKKTYF
Ga0209253_109436882	3300027900	Freshwater Lake Sediment	MIFLSKYQNNHLAEPVKIKTSPFRNLDRTSNLIEEVFRREKSKEKKTYFCKPVV
Ga0209048_101824082	3300027902	Freshwater Lake Sediment	MIFLSKYQDNQPAEPVKIKTSPFRNLDRTCILIEEVFTREKSSRRKTYI
Ga0265596_11474642	3300028161	Saline Water	MIFLSKYQDNQPTEPVKTKTSPFRNLDKTCNLFEEIFRREKSSRRKTYICKPVV
Ga0268278_11235491	3300028162	Saline Water	MIFLSKYQDNQPTEPVKTKTSPFRNLDKTCNLFEEIFRREKSS
Ga0268279_11634452	3300028169	Saline Water	MIFLSKYQDNQPTEPVKIKTSPFRNLDRTSNLFEEIFRREKSSKRKTYICKPVV
Ga0265595_12453272	3300028191	Saline Water	SSDTGEQILSGSKMIFLSKYQDNQPAEPVKIKTSPFRNLDRTCNLIEEVFTREKSIERKTYFCKPVV
Ga0265592_10781252	3300028272	Saline Water	MFFLSKYQDNQPTEPVKIKTSPFRNLDRTSNLFEEIFRREK
Ga0268282_10310573	3300028276	Saline Water	MFFLSKYQDNQPTEPVKIKTSPFRNLDRTSNLFEEIFRREKSSKRKTYICKPVV
Ga0315555_13312392	3300031257	Salt Marsh Sediment	MIFLSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSIKKKTYFCKPVV
Ga0307437_11825622	3300031275	Salt Marsh	MIFLSKYQDNQPSEPVKIKTSPFRNLDRTCNLIEEVFTREKSSEKKTYIWKPVV
Ga0307431_10052824	3300031278	Salt Marsh	MIFISKYQDNHLAEPVKIKTSPFRNLDRTCILIEEVFRREKSKERNKTYFYKLVV
Ga0307431_10106655	3300031278	Salt Marsh	MIFLCKYQDNHLAEPVKIKSSPFRNLDRTCNLIEEVFTREKSAERKTI
Ga0307431_10786591	3300031278	Salt Marsh	MIFLSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSRERKTYFSKSVV
Ga0307430_10667792	3300031337	Salt Marsh	QPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSIKKKTYFCKPVV
Ga0307427_10271692	3300031351	Salt Marsh	IFLCKYQDNHLAEPVKIKSSPFRNLDRTCNLIEEVFTREKSAERKTI
Ga0307421_10432282	3300031355	Salt Marsh	MIFLFKYQDNQAAEHVKIKTGPFRNLDRTCNLNEEVFIKEKSKEMKTYICNPVV
Ga0307439_11682781	3300031356	Salt Marsh	LSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSIKKKTYFCKPVV
Ga0307438_10621442	3300031358	Salt Marsh	FLSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSIKKKTYFCKPVV
Ga0307443_11827981	3300031365	Salt Marsh	LSKHQDNQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSRERKTYFSKSVV
Ga0307380_107400492	3300031539	Soil	MIFLSKYQDNQPTEPVKIKTSPFRNLDRTYNLIEEVFTRERSSRRKTYIWEPVV
Ga0307380_109659631	3300031539	Soil	MIFLCKYQDNQLAEPVKIKTSPFRNLDRTCNLIEEVFTREKSSGRKTYI
Ga0307380_112289562	3300031539	Soil	MIFLSKYQANQPAEPVKIKTSPFRNLDRTCNLIEEVF
Ga0307379_111880572	3300031565	Soil	MIFLSKYQDNQPAEPVKIKTSPFRNLDRTCNLIEEV
Ga0307378_104840623	3300031566	Soil	MIFLSKYQDNQPAEPVKIKTSPFRNLDRTCNLIEEVFTREKSTERKTYFCKPVV
Ga0307378_115181632	3300031566	Soil	MIFLFKYQDNQPAEPVKIKTSPFRNLDRTCNLIEVVFTREKSIERKTYFCKPVV
Ga0307376_100133962	3300031578	Soil	MIFLSKYQDNQPTEPVKTKTSPFRNLDRTCNLIEEIFRREKSSERKTYIWNPVV
Ga0307376_108648691	3300031578	Soil	MIFLSKYQDNQPTEPVKTKTSSFRNLDRACNLIEEVFTREKSSKRKTYIWKPVV
Ga0315543_10886102	3300031651	Salt Marsh Sediment	QPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSRERKTYFSKSVV
Ga0315543_11444482	3300031651	Salt Marsh Sediment	NQPSEPVKIKASPFRNLDRTCNLIEEVFTREKSSEKKTYIWKPVV
Ga0315549_10954771	3300031654	Salt Marsh Sediment	MIFLSKYQDNQPTEPVKIKTSPFRNLDRTCNLIEEVFTREIS
Ga0315538_10162053	3300031864	Salt Marsh Sediment	MIFLSKYQDNQPSEPVKIKASPFRNLDRTCNLIEEVFTREKSSEKKTYIWKPVV
Ga0315297_102852033	3300031873	Sediment	MIFLSKYQDNQPTEPVKIKTSPFRNLDRTCNLIEEVFTREKSSRRKTYIWKPVV
Ga0315274_115719531	3300031999	Sediment	MIFLSKYQDNQPTEPVKIKTSPFRNLDRTCNLIEEVFTRER
Ga0315546_10019931	3300032029	Salt Marsh Sediment	NQPSEPVRIKTSPFRNLDRTCNLIEEVFTREKSRERKTYFSKSVV
Ga0315284_104258292	3300032053	Sediment	MIFLSQYQDNQPAEPVKIKTSPLRNLDRTCILIEEVFTREKSLGRKTYI
Ga0315284_118649662	3300032053	Sediment	MIFLSKYQDNQTAEPVKIKTSPFRNLDRTCILIEEVFTREKSSGRKTY
Ga0315295_110831111	3300032156	Sediment	MIFLSKYQYNQTAEPVKIKTSPFRNLDRTCILIEEVFTREKSSGRKTYI
Ga0315281_102907833	3300032163	Sediment	MIFLSKYQDNPTTEPVKIKTSPFRNLDRTCILIEEVFTREKSSERKTYIWKPVV
Ga0315281_122612741	3300032163	Sediment	MIFLPKYQDNQPAEPVKIKTSPFRNLDRTCILIEEVFTREKSSRRKTYI
Ga0315268_121447952	3300032173	Sediment	MIFLSKYQDNPTTEPVKIKTSPFRNLDRTCNLIEEVFTREKSTEIKTYFCKPVV
Ga0315275_103167482	3300032401	Sediment	MIFISKYQDNQTPEPDKIKTSPFRNLDRTCNLIEEVFTREKSSRRKTYIWKLVV
Ga0315275_103658732	3300032401	Sediment	MIFLSKYQDNQPAEPVKIKTSPFRNLDRTCDLIEEVFTREKSTKRKTYFCKTVV
Ga0315275_105727601	3300032401	Sediment	MIFLSKYQDNQPTEPVKIKTSPFRNLDRTCNLIEEVFTREKSSRRKTY
Ga0334887_10183954	3300033169	Sludge	MIFLFKYKANQPAEPVKIKTSPFRNLDRTCNLVEEVFKREKSKEKKTYFCRTRGRIDGSI
Ga0334887_10960472	3300033169	Sludge	MIFLFKYKANQPAEPVKIKTSPFRNLDETCSLVEEVFKREKSKEKKTYFCRTRGRIDGSI
Ga0334884_10536454	3300033170	Sludge	QILSGSIMIFLFKYKANQPAEPVKIKTSPFRNLDETCSLVEEVFKREKSKEKKTYFCRTRGRIDGSI
Ga0326726_100002335	3300033433	Peat Soil	MIFLSKYQDNQPAEPVKIKTSPFRNHDRTRILIEEVFTR
Ga0326726_100214634	3300033433	Peat Soil	MIFLSKYQDNQPAEPVKIKTSPLRNLDRTCILIEEVFTREKSSKKKTYI
Ga0316600_113444822	3300033481	Soil	MIFLSKYQDNQIAEPVKIKTSPYRNLDRTCNLIEEVFRREKSKEKKTYFCKPVV
Ga0316624_101960934	3300033486	Soil	MIFLFKYQDNHLTEPVKIKTSPLRNLDRTCNLIEE
Ga0299912_102725711	3300033489	Soil	MIFLSKYQDNHLAEPVKIKTSPFRNLDRTCNLIEEVFRREKSKERKTYFC
Ga0316616_1034845862	3300033521	Soil	MIFLSKYQDNQLAEPVKIKTSPFRNLDRTCNLIEEVFREKNQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters