3300029824: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-1-30-B

Overview

Basic Information

• IMG/M Taxon OID: 3300029824
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121315 | Gp0152036 | Ga0134852
• Sample Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-1-30-B
• Sequencing Status: Permanent Draft
• Sequencing Center: Chongqing University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14601299
• Sequencing Scaffolds: 7
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Alt. (m): N/A
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F010099	Metagenome / Metatranscriptome	308	Y
F020859	Metagenome / Metatranscriptome	221	Y
F022442	Metagenome / Metatranscriptome	214	Y
F033483	Metagenome / Metatranscriptome	177	Y
F045124	Metagenome / Metatranscriptome	153	Y
F063807	Metagenome / Metatranscriptome	129	N
F071368	Metagenome / Metatranscriptome	122	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134852_100046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	25300
Ga0134852_100579	Not Available	3128
Ga0134852_100799	Not Available	2279
Ga0134852_101026	Not Available	1795
Ga0134852_101369	Not Available	1408
Ga0134852_101407	All Organisms → cellular organisms → Bacteria	1382
Ga0134852_102126	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	988

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134852_100046	Ga0134852_10004627	F020859	MNKIIAKEVNPADVDFSAYFDDDGLKSVEGENCAVYIITADRRRNSGFNMEEYEYIEEQSQDIIDGFHDVNDKWANGYNSYDNYKEVLEYNNVLYSPQKCHLLKQWAEHADTSDTETIAEYLTITTGEEWAVKSFTGYSQGDYCEVVYCINHYTPEHINEIGKLWLGCGTEFAINNCYGYFVIDELRWEEGKKLRQYLADCYGCKPDELEIYLYDGEHTVTDYKIMK
Ga0134852_100579	Ga0134852_1005792	F010099	MHNSRLPLSDAVLVITYIYPLPQFSHMTDAQSSFWTPARIGAVIGVVLLVVLLAYMVSLPQNKFVHADLLEPTYAGDADLGYWMVDKYDQEVDVYHLLVVVEHPNGTYEWLDGDGIWLPRRAVEGTFTVIGSFDRRKANL
Ga0134852_100799	Ga0134852_1007997	F033483	VTSGDTCVTINIDGLPVTLVLPERDVELMMWTYRANRILQEGRDDE
Ga0134852_100799	Ga0134852_1007998	F022442	MTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAFRDIEQGLRLQRSQTDRSLMLTERGRVYSIPVYLVLEVKDGIRESCTISMRVTDAQQLDDAHSRQTVLEVWA
Ga0134852_101026	Ga0134852_1010261	F010099	MTYSQSSFWTPARIGAVIGAVLLIVALAYLVSLPQNQFQPADLLEPTYAADADLGYWMVDKYDQEVDVYHLLVVMEHPNGTYEWLDGDGIWL
Ga0134852_101369	Ga0134852_1013691	F045124	MTDSDLQVVIYETRQDVRWIKDTLKEIKEANQAQDERINEIKARQDLQTGRDGAIAAAISAVVAFFTALASGGW
Ga0134852_101369	Ga0134852_1013694	F071368	MDSLPHPVTTTDTYLARIVSQNDEIIALLNQQRPEPKQPRRLKEPKE
Ga0134852_101407	Ga0134852_1014073	F063807	MKPLRTLSVSAALHSRLWLHKIRRRARTLDEVVEQALDALEEQEANDG
Ga0134852_102126	Ga0134852_1021261	F004383	DNPLERAFMARIRADELRAELATLQKEFDEREDVVALKRRIDRCDHERQTCIEQAKIAGVSKVGNYLLKIRTRKTRTVVPKLFFAKHGAEAFVECCTVAIGKAEALLGKSALDDCCEVEVKEIGVTVEYERPENQGEVEDL
Ga0134852_102126	Ga0134852_1021263	F003987	MIPALPCGTFADSETPAGAFYIAAFEKGDTPHHVGEYRIDVVIRALQALKACGYDDVEVGSIFAPDPENVHLLLIGLDGEARFGDA