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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029797 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133104 | Gp0282263 | Ga0243129 |
| Sample Name | Sediment microbial communities from Yellow Sea, Weihai, China - HGD.2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shandong University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 333526101 |
| Sequencing Scaffolds | 34 |
| Novel Protein Genes | 37 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 4 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028 | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp. | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 3 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → Muricauda ochracea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas soli | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Sediment Microbial Communities From Yellow Sea, Weihai, China |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Sediment → Sediment Microbial Communities From Yellow Sea, Weihai, China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Weihai | |||||||
| Coordinates | Lat. (o) | 37.31 | Long. (o) | 122.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F011154 | Metagenome / Metatranscriptome | 294 | Y |
| F013318 | Metagenome / Metatranscriptome | 272 | Y |
| F015605 | Metagenome / Metatranscriptome | 253 | N |
| F019989 | Metagenome / Metatranscriptome | 226 | Y |
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F030405 | Metagenome / Metatranscriptome | 185 | Y |
| F031503 | Metagenome / Metatranscriptome | 182 | Y |
| F035785 | Metagenome / Metatranscriptome | 171 | Y |
| F037652 | Metagenome / Metatranscriptome | 167 | N |
| F045728 | Metagenome / Metatranscriptome | 152 | Y |
| F046997 | Metagenome | 150 | N |
| F051165 | Metagenome / Metatranscriptome | 144 | Y |
| F059891 | Metagenome / Metatranscriptome | 133 | Y |
| F064746 | Metagenome / Metatranscriptome | 128 | N |
| F072820 | Metagenome / Metatranscriptome | 121 | Y |
| F074913 | Metagenome / Metatranscriptome | 119 | Y |
| F077264 | Metagenome / Metatranscriptome | 117 | Y |
| F078674 | Metagenome / Metatranscriptome | 116 | Y |
| F082057 | Metagenome | 113 | N |
| F096530 | Metagenome / Metatranscriptome | 104 | N |
| F103319 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0243129_1000717 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix | 13872 | Open in IMG/M |
| Ga0243129_1003115 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 7227 | Open in IMG/M |
| Ga0243129_1005411 | All Organisms → cellular organisms → Bacteria | 5491 | Open in IMG/M |
| Ga0243129_1010465 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3849 | Open in IMG/M |
| Ga0243129_1012316 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 3512 | Open in IMG/M |
| Ga0243129_1013239 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 3373 | Open in IMG/M |
| Ga0243129_1014727 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3172 | Open in IMG/M |
| Ga0243129_1023406 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028 | 2405 | Open in IMG/M |
| Ga0243129_1037083 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1794 | Open in IMG/M |
| Ga0243129_1037888 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1768 | Open in IMG/M |
| Ga0243129_1038314 | All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp. | 1754 | Open in IMG/M |
| Ga0243129_1048040 | Not Available | 1500 | Open in IMG/M |
| Ga0243129_1051180 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 1434 | Open in IMG/M |
| Ga0243129_1051304 | All Organisms → cellular organisms → Bacteria | 1432 | Open in IMG/M |
| Ga0243129_1053628 | Not Available | 1387 | Open in IMG/M |
| Ga0243129_1056138 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 1343 | Open in IMG/M |
| Ga0243129_1058152 | All Organisms → Viruses → Predicted Viral | 1311 | Open in IMG/M |
| Ga0243129_1058917 | Not Available | 1298 | Open in IMG/M |
| Ga0243129_1067001 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → Muricauda ochracea | 1181 | Open in IMG/M |
| Ga0243129_1072321 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas soli | 1116 | Open in IMG/M |
| Ga0243129_1077199 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | 1062 | Open in IMG/M |
| Ga0243129_1087163 | Not Available | 963 | Open in IMG/M |
| Ga0243129_1097174 | Not Available | 883 | Open in IMG/M |
| Ga0243129_1100498 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 860 | Open in IMG/M |
| Ga0243129_1102718 | All Organisms → cellular organisms → Bacteria | 846 | Open in IMG/M |
| Ga0243129_1117286 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | 763 | Open in IMG/M |
| Ga0243129_1121370 | Not Available | 743 | Open in IMG/M |
| Ga0243129_1122201 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 739 | Open in IMG/M |
| Ga0243129_1136769 | Not Available | 677 | Open in IMG/M |
| Ga0243129_1143617 | Not Available | 650 | Open in IMG/M |
| Ga0243129_1146403 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 640 | Open in IMG/M |
| Ga0243129_1160002 | Not Available | 593 | Open in IMG/M |
| Ga0243129_1179545 | Not Available | 522 | Open in IMG/M |
| Ga0243129_1183856 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0243129_1000717 | Ga0243129_100071720 | F051165 | MTTSFQKALAVLASVASVLAGIVTIASYLSGEDVALPPSLITPSSESQPIIIHARVVFIEKNMTYAIDYDKNLILLNESTIIV |
| Ga0243129_1000717 | Ga0243129_10007176 | F103319 | MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLAQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKIPR |
| Ga0243129_1003115 | Ga0243129_10031155 | F020363 | VARVFALVVRCRIMLLFVYSRVGKNRDTSRGSPAGAGADRTAGHLTVRFSQKILAVRKGNDIYRPVRLSFLLLLA |
| Ga0243129_1003115 | Ga0243129_10031157 | F020363 | VARVFALVVRCRVMMLIVYSRVGKNRDTRRGSPAGAGAGRTADHLAVLFSQKVLAVRSANCIYRPVSGSYLTSKLNGTA |
| Ga0243129_1005411 | Ga0243129_10054115 | F020363 | MWRWRRVAVARVFALVVRCRVMRLLLYSRVGKNRDTRRESPAGTGAGRTADHLTVLFSQKVLAVREANDIYRPVTASIFLLSTDF |
| Ga0243129_1010465 | Ga0243129_10104651 | F045728 | QLASAPRESSGQNERASMAVQAAPAPAGDSLLVSRFLPTRK |
| Ga0243129_1012316 | Ga0243129_10123161 | F064746 | MAKISLIIFLGICAVLACGCLDTAAEQKSVMIDGYTFTASLNDKWDTSYGEVSKYNPADLEDQFGIPGGAYDWTGFEDYGAFNYRSGEPSGSITKGGWANIFVLKPDEDLSDSSSIDILKHATYMIINPKDHRNAVIGGDLKEKEIEYNGRQAYFIEVEGELITPENYHTFINDNSLGAIAFFLDDDTVALIDVETTNDFGMSAWDVINSITVN |
| Ga0243129_1013239 | Ga0243129_10132394 | F064746 | MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTAALDDKWDNSSREVSKYKPADLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSQGAIAFFLDDGKVCVIDAFTTNNYGMSAWDIIDSITVTS |
| Ga0243129_1014727 | Ga0243129_10147275 | F030405 | FCTRGAMQDYDVVLFILALAKTVTPGGGPRRESGQAAPLTT |
| Ga0243129_1023406 | Ga0243129_10234061 | F051165 | MTTSFQKALAIMASVASVLAGVVTIASYLSGEDVTLQPSSATAPSESRPIIIQARAVFVDDDKIYILDYDNNLIEWNESIIIV |
| Ga0243129_1037083 | Ga0243129_10370831 | F019989 | MNTTDINKNLTAPSVTIAPRNPARGVLTFVVTLTTFKDVRSYPCRSLESATKLAERFIAGVTKPRPAAQPETTPAPAAEPVAA |
| Ga0243129_1037888 | Ga0243129_10378881 | F074913 | VARVFALVVRCRVMRLLLYSRVGKNRDTRRESPAGAGAGRTAGHLAVFFSRRFSRYGAPMTYTDLLATVVHISNFI |
| Ga0243129_1038314 | Ga0243129_10383141 | F020363 | MWRWRRVAVARVFALVVRCRIMLLLVYSRVGKNRDTRRGSPAGAGAGRTADHFTVLFSQKILAVRKANDIYRPVRASFYSQKFFNISFYVA |
| Ga0243129_1048040 | Ga0243129_10480401 | F000388 | MKVIKVTKEYFETDDEKVYFFEPLEKEISVDDMQKIVDANQKLVKEMKD |
| Ga0243129_1051180 | Ga0243129_10511801 | F059891 | MDAAGFLKLKRGYWVIESALHHALDVTLREDHSRVRYPKAAFVLSLFRRIVVSFAQVWVAHCRKLNPKSRVTTRKFQQRFSRADGGPSRLHALMFAKSPVPWLSPA |
| Ga0243129_1051304 | Ga0243129_10513041 | F078674 | KWYTVRKENKKQMETIKKAVENRKAPFEIEGKAGGRVISLRVSERMEQLLEKQAQEWGMSISDTLRGILNFYYLPPLLLEAWEKKVQALIDLDTEQMGKNRADLNAPTLAQRIEPVLVDSEEAEEYANFIHELWEKSLKYFETLREEAKTMNRIASKRLQDLLKALENANYYEEFVKKVEEVEP |
| Ga0243129_1051304 | Ga0243129_10513042 | F015605 | MIDTLKLMLNEYEITDNSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNADNWNLTLKPLPAGNRATGAFLQLSIPKNYYGSNFYSVGEEGTKAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETGGLPPTMRFEHRLLNKQK |
| Ga0243129_1053628 | Ga0243129_10536283 | F077264 | MALNKIWNLRADSAWIELVKIQANEAGCDNPGAYVRDLVRALANNPTIKKNIF |
| Ga0243129_1056138 | Ga0243129_10561383 | F030405 | TRGAMQDYDVVLFILALAKTVTPGGGPRREPGQVAPPTT |
| Ga0243129_1058152 | Ga0243129_10581521 | F077264 | LRADSAWIELVKIQANEAGCDNPGAYVRDLVRALANNPTIKKSIFDAMRGGV |
| Ga0243129_1058917 | Ga0243129_10589174 | F072820 | MKPLHQITVDAVTIRGIIDYLEKSVEPVGLHEIAMTQHVSNATALRLCRILEKASIAEHPVVTRVVMGASQEVPQLAWQLTKPFFLGGCVYNAERLAGGMA |
| Ga0243129_1067001 | Ga0243129_10670011 | F045728 | MQLASAPRESSGQNEIASMAVQAAPAPAGDSLLVSRFLPTR |
| Ga0243129_1072321 | Ga0243129_10723211 | F072820 | VKPSHQITADAVTIRGIIDYLEKSVEPVGLHELAMTQHISNATALRLCRILERAAIIEHPVVTRVVMGASQEVPQLAWRLTKTFFLGGCVYNAEELAGGMA |
| Ga0243129_1077199 | Ga0243129_10771992 | F037652 | DRHLNMERIPYTNFWSEAPEGQRRAWRPTDEVRRRLMRLWTIQALLLMAIVAVGALLANESKRMPPIFAKLPNGMVFETAIGRLQMDRLARTELVNDVLPLLYYQEGSFNYLGAIRQNVKPQLLGRFQAEMQNASKQTNSTVCLNVVETFEVLNAPAKGFDAVTKGVLSKRSSKDSASAPIYIRTRWLLSADRYLLSRVEEIRPGDYYELFLAEKQRLKKLSKPELEREMGVRKNQEIPLPKRNNLY |
| Ga0243129_1087163 | Ga0243129_10871632 | F074913 | DRTKCVLTFGGMWRWRRVAVARVFALVVRCRVMMLFVNSRVGKNRDTKREPPAGAGAGRGASHKTASLFTQLSRHGAPMTYTDLLAVGYLLPSI |
| Ga0243129_1097174 | Ga0243129_10971742 | F096530 | MSSSENGLVSFPPGITTCCLGRNGILTTVGIYVDSFDHKIILTPQHSRRQMARCTIELPNDFRVMLGLILELLKNSPGTREALQQEFAETGAPPAQP |
| Ga0243129_1100498 | Ga0243129_11004982 | F074913 | SWRRVAVARVFALVVRCRDVMLFVYSRVGKNRDARRGSPAGAGAACAASHITHILSQKILAAQKPMTYTDLLWAMLID |
| Ga0243129_1102718 | Ga0243129_11027182 | F013318 | NLVSAVVTNFVPVFYTNVVQVPVTNLVARPEAEAVIQAAGSVVNTFAPGIGSILALALAGLYHGYRQVRNRKVNEALVQGVETARAVLTTTPQGQAADAQFVKWLMEHQKEAGVFTTVSGLVEQLSDNPAAKMTAQEIAERVQRAQQQRTAGQAAGA |
| Ga0243129_1117286 | Ga0243129_11172862 | F046997 | MTSAYRTLSLIGCSLTLGVGVAAGPITAADVRTERDAIPRYLAQEKAEAIEMFGASQQALLRDRAMSGISRIENKLQSGPTNAVVEPNAPLLPLGEKKLVLHADVLKKSYTAYRPSNGKPLYVNTKGRRAPETYVAPEFLRTGANILIPKGTVRVPVCLGGDELEDYLQLRCDRKLQTGDYWKELHARKLDDEQLARLRYYDYLDTHAALRSVPVYQCTELRSRTH |
| Ga0243129_1121370 | Ga0243129_11213701 | F082057 | MEALFHPGACWLVIVDNRCTVLRIQPGGDRCQFPGESGEHSLGRIQEWLSPVWTATMLKCVQCLKRIAQQLKPGAKLEICDQCRNTVGSPRPMSYWLGYLDDQPEIVRVVEDGIHRLGEAQTYPLAHVREWLMPIWGPDMVYCPGCCQAKPRKDIVFLFHRSPKGVCKDCSEHFEFEHPEVSVRA |
| Ga0243129_1122201 | Ga0243129_11222013 | F045728 | MSLASVPRESSGQNVIPLMAAQAAPAPAGDSLLVSRFLPT |
| Ga0243129_1136769 | Ga0243129_11367691 | F035785 | MIRIEADKALKMTETEMLDVVFEASENSLIELNVVDPDSQAGDNDGVYLEIIKLDDEESVVRDRWPNQDGDRRIVSTDDIYAIYRALVDQVEEVA |
| Ga0243129_1143617 | Ga0243129_11436171 | F030405 | AMQVCDVVLYIVALAKTVTPGGGPRREPGQAAPPTT |
| Ga0243129_1146403 | Ga0243129_11464031 | F045728 | MSLASAPRQYCGQNVRTSMAVQAAPAPAGDPLLVSRFLPTREHTNQH |
| Ga0243129_1160002 | Ga0243129_11600021 | F019989 | MNTTNQNNNVTAAPSVTIAPRNPAKGVLNFVVTLTTHKDVRSYPCRSMESAIKLAERFIAGVTKPARPSTQEAETNPHQYDGPPRTAEQVAA |
| Ga0243129_1179545 | Ga0243129_11795451 | F011154 | TRSDEKPLRVGLRRPGQFRAWANRSYPEGIRLLLCISTGGRLGRSPEGDRPNERRRKAGQSERPNREGHAASAGPVKTFREVGGVKNDTADLWTKGNLRVKRRDPWHRANAPSKAAADPALSGQDADQKTQTCLDLVRKPVAQPPAQAS |
| Ga0243129_1183856 | Ga0243129_11838561 | F031503 | MNRQEMMELFRATANINTPEGLQAYRAFAAALTTPILKKLELESIMRQLFSVEILGPGAQAMYPVAEDFEIPVWVLPGLSYVAQNFVEGIGEEVYVPTFSISTAADWKITYARDSRIDIAQRAATKAAMELANYEEECGWRVIMPAATSAFSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |